Wall clock time and date at job start Mon Mar 30 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47413 * 2 1 4 4 H 1.08998 * 109.47425 * 305.64587 * 3 2 1 5 5 C 1.50693 * 109.47345 * 185.64556 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00649 * 5 3 2 7 7 C 1.37880 * 120.00133 * 60.00149 * 5 3 2 8 8 N 1.31514 * 119.99866 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00082 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47275 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47356 * 119.99561 * 9 7 5 12 12 H 1.48495 * 109.47047 * 239.99830 * 9 7 5 13 13 N 1.46904 * 109.47142 * 65.64470 * 3 2 1 14 14 C 1.46895 * 111.00169 * 204.29677 * 13 3 2 15 15 H 1.09008 * 109.46783 * 326.20475 * 14 13 3 16 16 C 1.52993 * 109.47456 * 86.20669 * 14 13 3 17 17 C 1.50702 * 109.46948 * 206.20852 * 14 13 3 18 18 N 1.29021 * 124.91518 * 314.69186 * 17 14 13 19 19 C 1.31783 * 117.12439 * 179.81309 * 18 17 14 20 20 C 1.33645 * 114.49860 * 0.47366 * 19 18 17 21 21 C 1.50698 * 126.03707 * 179.78859 * 20 19 18 22 22 S 1.70976 * 124.91413 * 134.99678 * 17 14 13 23 23 H 1.08998 * 109.47004 * 53.70643 * 1 2 3 24 24 H 1.08999 * 109.47627 * 173.71147 * 1 2 3 25 25 H 1.09004 * 109.46651 * 293.71714 * 1 2 3 26 26 H 1.09000 * 109.46941 * 120.00506 * 2 1 3 27 27 H 1.08999 * 109.46885 * 240.00361 * 2 1 3 28 28 H 0.96999 * 119.99790 * 179.97438 * 8 7 5 29 29 H 1.00900 * 110.99765 * 328.24470 * 13 3 2 30 30 H 1.09000 * 109.47438 * 304.53400 * 16 14 13 31 31 H 1.08997 * 109.47511 * 64.53934 * 16 14 13 32 32 H 1.09003 * 109.47238 * 184.53901 * 16 14 13 33 33 H 1.07998 * 122.75211 * 180.22266 * 19 18 17 34 34 H 1.09000 * 109.47152 * 269.95618 * 21 20 19 35 35 H 1.08996 * 109.47399 * 29.96076 * 21 20 19 36 36 H 1.08997 * 109.47203 * 149.95863 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1398 6 1 4.1541 1.8863 0.6316 7 6 4.1302 0.8830 -1.2524 8 7 3.3831 0.3448 -2.1914 9 14 5.9901 0.8852 -1.4253 10 1 6.5965 1.5459 -0.2417 11 1 6.4804 -0.5135 -1.5172 12 1 6.3721 1.6255 -2.6546 13 7 1.6648 2.0946 1.2618 14 6 1.6006 3.5534 1.1017 15 1 2.3560 3.8737 0.3840 16 6 0.2132 3.9500 0.5932 17 6 1.8571 4.2163 2.4306 18 7 1.3252 3.8571 3.5498 19 6 1.6614 4.5446 4.6227 20 6 2.5172 5.5453 4.3941 21 6 3.0674 6.4947 5.4270 22 16 2.8892 5.5578 2.6719 23 1 -0.3633 0.6083 -0.8283 24 1 -0.3634 -1.0214 -0.1126 25 1 -0.3633 0.4134 0.9409 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.7979 -0.0500 -2.9743 29 1 0.7911 1.7304 1.6111 30 1 -0.0051 3.4084 -0.3272 31 1 -0.5345 3.7024 1.3466 32 1 0.1907 5.0222 0.3977 33 1 1.2738 4.3203 5.6055 34 1 2.4113 7.3611 5.5102 35 1 3.1257 5.9891 6.3908 36 1 4.0633 6.8206 5.1269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126126036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:03 Heat of formation + Delta-G solvation = 12.367860 kcal Electronic energy + Delta-G solvation = -16836.911746 eV Core-core repulsion = 14253.608956 eV Total energy + Delta-G solvation = -2583.302790 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66453 -38.51025 -35.40790 -33.70711 -32.83251 -30.34100 -28.02215 -27.87155 -25.46263 -24.67478 -23.01401 -21.52596 -19.74683 -18.95729 -18.28263 -16.82528 -16.60359 -15.91095 -15.76146 -15.39882 -14.98730 -14.54269 -14.32175 -14.07340 -13.83308 -13.58835 -13.44023 -13.28427 -13.07385 -12.83436 -12.69294 -12.53017 -12.26045 -11.99741 -11.96627 -11.62210 -11.46528 -11.02891 -10.47956 -10.40523 -10.10063 -9.59261 -8.99051 -8.06156 -6.17775 -0.16116 0.46222 0.88751 1.39273 1.42094 1.53358 1.98913 2.44216 3.18736 3.33677 3.67882 4.06160 4.12310 4.23735 4.34803 4.40599 4.52131 4.59070 4.71127 4.76365 4.76981 4.88591 4.95593 5.05260 5.11271 5.18530 5.26198 5.37269 5.42909 5.60628 5.75881 5.89767 6.36465 6.47791 6.92962 6.96865 6.98023 7.51242 8.96853 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.006648 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.321122 B = 4210.997017 C = 5082.067410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C 0.228 3.772 4 H -0.018 1.018 5 C -0.511 4.511 6 H 0.043 0.957 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.163 3.837 15 H 0.077 0.923 16 C -0.159 4.159 17 C 0.060 3.940 18 N -0.485 5.485 19 C 0.012 3.988 20 C -0.225 4.225 21 C -0.070 4.070 22 S 0.108 5.892 23 H 0.041 0.959 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 11.262 10.849 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.120 3.880 4 H -0.001 1.001 5 C -0.550 4.550 6 H 0.062 0.938 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.307 5.307 14 C 0.049 3.951 15 H 0.095 0.905 16 C -0.220 4.220 17 C -0.219 4.219 18 N -0.199 5.199 19 C -0.138 4.138 20 C -0.346 4.346 21 C -0.129 4.129 22 S 0.363 5.637 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.210 0.790 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.843 11.317 10.265 15.541 hybrid contribution -0.092 -0.519 -0.162 0.552 sum -2.935 10.797 10.103 15.075 Atomic orbital electron populations 1.21744 0.96228 1.01130 1.00485 1.21582 0.94272 0.98955 1.01063 1.18972 0.93907 0.90648 0.84489 1.00072 1.21454 0.92843 1.36749 1.03953 0.93836 1.25597 1.01924 0.95290 0.95591 1.69988 1.35998 1.39798 1.09826 0.85629 0.81232 0.77720 0.77795 1.19897 1.20637 1.20410 1.60409 1.37182 1.01648 1.31449 1.19912 0.97671 0.89282 0.88243 0.90476 1.22333 0.95845 1.02509 1.01293 1.27042 0.98345 0.98072 0.98418 1.66143 1.26421 1.29006 0.98316 1.22112 0.99197 0.93756 0.98736 1.26397 1.05735 1.05239 0.97268 1.20338 1.00977 0.96624 0.94962 1.83854 1.45226 1.30039 1.04565 0.93988 0.92527 0.92780 0.95019 0.91089 0.93001 0.84721 0.92237 0.91691 0.90853 0.78958 0.89082 0.88628 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.63 71.98 0.69 -4.59 16 2 C -0.12 -5.74 5.37 30.60 0.16 -5.58 16 3 C 0.23 11.45 1.83 44.17 0.08 11.53 16 4 H -0.02 -0.99 7.19 -2.39 -0.02 -1.00 16 5 C -0.51 -28.71 8.46 25.60 0.22 -28.49 16 6 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -52.31 11.29 21.45 0.24 -52.07 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 N -0.67 -29.69 6.00 -477.17 -2.86 -32.56 16 14 C 0.16 6.34 2.89 44.17 0.13 6.47 16 15 H 0.08 3.31 7.60 -2.38 -0.02 3.29 16 16 C -0.16 -5.19 9.14 71.98 0.66 -4.53 16 17 C 0.06 2.13 6.25 88.52 0.55 2.68 16 18 N -0.48 -16.95 10.51 -191.44 -2.01 -18.96 16 19 C 0.01 0.34 11.25 83.66 0.94 1.28 16 20 C -0.23 -5.55 6.60 24.64 0.16 -5.38 16 21 C -0.07 -1.06 10.42 71.24 0.74 -0.32 16 22 S 0.11 3.19 23.18 -56.49 -1.31 1.88 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.86 6.67 -2.38 -0.02 1.85 16 26 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 3.83 5.94 -2.39 -0.01 3.81 16 28 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.33 13.76 6.34 -89.69 -0.57 13.20 16 30 H 0.06 2.02 7.47 -2.39 -0.02 2.00 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.19 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -63.01 309.47 1.37 -61.64 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.50 Total: 19.26 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 4.79 Total: -25.68 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.63 Total: -103.59 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.88 kcal Total: -63.01 1.37 -61.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126126036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.011 kcal (2) G-P(sol) polarization free energy of solvation -63.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds