Wall clock time and date at job start Mon Mar 30 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.33633 * 126.04059 * 119.99983 * 4 2 1 6 6 N 1.31777 * 114.50165 * 180.02562 * 5 4 2 7 7 C 1.29023 * 117.12505 * 359.97438 * 6 5 4 8 8 C 1.50702 * 124.91915 * 180.02562 * 7 6 5 9 9 N 1.46899 * 109.47198 * 89.97070 * 8 7 6 10 10 C 1.46904 * 111.00031 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46845 * 325.00228 * 10 9 8 12 12 C 1.53004 * 109.46769 * 85.00166 * 10 9 8 13 13 C 1.50694 * 109.46891 * 205.00153 * 10 9 8 14 14 H 1.07995 * 120.00628 * 0.02562 * 13 10 9 15 15 C 1.37886 * 119.99820 * 179.97438 * 13 10 9 16 16 N 1.31517 * 119.99496 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00031 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47338 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46969 * 120.00260 * 17 15 13 20 20 H 1.48503 * 109.47089 * 239.99927 * 17 15 13 21 21 S 1.70978 * 110.16634 * 359.72416 * 7 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08000 * 122.75143 * 359.97438 * 5 4 2 30 30 H 1.09003 * 109.47583 * 209.97677 * 8 7 6 31 31 H 1.09004 * 109.47116 * 329.97218 * 8 7 6 32 32 H 1.00890 * 111.00120 * 303.95567 * 9 8 7 33 33 H 1.08997 * 109.47049 * 299.99751 * 12 10 9 34 34 H 1.08998 * 109.46688 * 60.00289 * 12 10 9 35 35 H 1.08998 * 109.46464 * 180.02562 * 12 10 9 36 36 H 0.97005 * 119.99782 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8038 -1.8015 1.2485 6 7 3.1095 -2.2348 2.4549 7 6 2.6393 -1.5697 3.4555 8 6 2.8781 -1.9076 4.9046 9 7 4.0870 -1.2183 5.3753 10 6 4.3521 -1.5254 6.7872 11 1 3.4069 -1.6291 7.3201 12 6 5.1393 -2.8337 6.8854 13 6 5.1554 -0.4084 7.4019 14 1 5.4402 0.4445 6.8038 15 6 5.5260 -0.4748 8.7283 16 7 5.1787 -1.5133 9.4568 17 14 6.5212 0.9101 9.4905 18 1 6.7806 1.9546 8.4673 19 1 5.7608 1.5025 10.6201 20 1 7.8129 0.3745 9.9904 21 16 1.7128 -0.2447 2.8994 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.1479 -2.2887 0.3481 30 1 2.0223 -1.5865 5.4984 31 1 3.0097 -2.9845 5.0097 32 1 4.8826 -1.4500 4.7997 33 1 4.5582 -3.6416 6.4408 34 1 6.0844 -2.7299 6.3525 35 1 5.3356 -3.0618 7.9330 36 1 5.4397 -1.5602 10.3899 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134970943.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:03 Heat of formation + Delta-G solvation = 8.943662 kcal Electronic energy + Delta-G solvation = -16200.705265 eV Core-core repulsion = 13617.253990 eV Total energy + Delta-G solvation = -2583.451274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72467 -37.98295 -36.61092 -34.62116 -31.86216 -29.56635 -28.02226 -27.33758 -27.03351 -24.34423 -22.38182 -22.17159 -20.35855 -18.85853 -18.26991 -16.91340 -16.61839 -16.20817 -15.56490 -15.21945 -15.06515 -14.98770 -14.54148 -14.02016 -13.93924 -13.56497 -13.27854 -13.05167 -12.86650 -12.77635 -12.57179 -12.40302 -12.30686 -12.18368 -12.11872 -11.93151 -11.62428 -11.09405 -10.54128 -10.49160 -10.13292 -9.73037 -9.10080 -8.10044 -6.21077 -0.24738 0.43538 0.89302 1.43119 1.44938 1.57300 1.87361 2.44978 3.16926 3.18884 3.71340 3.80477 3.98046 4.07498 4.22950 4.44921 4.53621 4.56848 4.66328 4.72552 4.77819 4.87952 4.96452 5.01488 5.05929 5.10799 5.28648 5.35415 5.35858 5.36897 5.67847 5.77655 6.22291 6.54512 6.64422 6.82717 6.91146 7.48386 8.95931 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.004365 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.860318 B = 6413.361149 C = 6837.341119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.147 4.147 4 C -0.212 4.212 5 C 0.014 3.986 6 N -0.498 5.498 7 C 0.033 3.967 8 C 0.136 3.864 9 N -0.676 5.676 10 C 0.216 3.784 11 H 0.012 0.988 12 C -0.157 4.157 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 S 0.159 5.841 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.193 0.807 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.331 0.669 33 H 0.024 0.976 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 3.070 -18.948 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.205 4.205 4 C -0.334 4.334 5 C -0.136 4.136 6 N -0.214 5.214 7 C -0.243 4.243 8 C 0.004 3.996 9 N -0.307 5.307 10 C 0.108 3.892 11 H 0.030 0.970 12 C -0.216 4.216 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.206 1.206 21 S 0.414 5.586 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.127 0.873 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.210 0.790 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.686 3.915 -17.978 20.793 hybrid contribution 1.326 -1.097 0.113 1.725 sum -8.360 2.818 -17.864 19.924 Atomic orbital electron populations 1.21923 0.93054 1.02406 1.02929 1.19761 0.96514 0.95620 0.91772 1.21938 1.01201 0.94476 1.02902 1.26494 1.06463 1.01725 0.98705 1.22025 1.00020 0.96279 0.95316 1.66271 1.23453 1.32279 0.99379 1.26809 1.01180 0.97032 0.99323 1.20373 0.95720 0.97140 0.86349 1.60801 1.04999 1.60227 1.04673 1.19000 0.94352 0.92429 0.83412 0.96986 1.22248 0.98737 0.98060 1.02576 1.21418 1.33444 1.05082 0.95388 0.92743 1.25699 0.97259 0.98266 0.97545 1.70010 1.47652 1.30460 1.08031 0.85451 0.78267 0.79368 0.78176 1.19415 1.20564 1.20646 1.83805 1.47704 1.28149 0.98945 0.89783 0.93141 0.92467 0.87338 0.93260 0.92934 0.89660 0.79049 0.89448 0.93595 0.85180 0.95684 0.95175 0.91550 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.14 71.98 0.66 -1.29 16 2 C -0.02 -0.24 3.32 -11.54 -0.04 -0.28 16 3 C -0.15 -2.20 9.13 71.98 0.66 -1.55 16 4 C -0.21 -4.88 5.15 24.64 0.13 -4.75 16 5 C 0.01 0.37 11.22 83.66 0.94 1.30 16 6 N -0.50 -16.59 10.54 -191.45 -2.02 -18.61 16 7 C 0.03 1.13 6.90 88.52 0.61 1.74 16 8 C 0.14 5.16 6.06 85.56 0.52 5.68 16 9 N -0.68 -29.77 6.22 -499.44 -3.11 -32.88 16 10 C 0.22 11.08 2.57 44.17 0.11 11.20 16 11 H 0.01 0.68 7.80 -2.39 -0.02 0.66 16 12 C -0.16 -7.73 8.94 71.98 0.64 -7.08 16 13 C -0.51 -28.84 8.84 25.60 0.23 -28.61 16 14 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 15 C 0.01 0.59 5.30 84.66 0.45 1.04 16 16 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 17 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 S 0.16 4.38 22.95 -56.49 -1.30 3.08 16 22 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 24 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.11 1.29 8.10 -2.39 -0.02 1.27 16 26 H 0.05 0.83 8.06 -2.39 -0.02 0.81 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.19 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.09 3.20 8.06 -2.39 -0.02 3.18 16 31 H 0.05 1.77 7.44 -2.38 -0.02 1.75 16 32 H 0.33 14.53 8.46 -89.70 -0.76 13.77 16 33 H 0.02 1.09 7.45 -2.39 -0.02 1.08 16 34 H 0.03 1.43 8.13 -2.39 -0.02 1.41 16 35 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 36 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 Total: -1.00 -61.98 312.88 1.05 -60.93 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.30 Total: 16.73 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.90 Total: -22.60 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -4.88 Total: -104.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.30 Total: 3.08 kcal Total: -61.98 1.05 -60.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970943.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.869 kcal (2) G-P(sol) polarization free energy of solvation -61.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds