Wall clock time and date at job start Mon Mar 30 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47272 * 2 1 4 4 C 1.50698 * 109.47091 * 119.99929 * 2 1 3 5 5 N 1.29020 * 124.91691 * 299.97435 * 4 2 1 6 6 C 1.31784 * 117.12375 * 180.02562 * 5 4 2 7 7 C 1.33638 * 114.49996 * 359.97438 * 6 5 4 8 8 C 1.50706 * 126.03754 * 179.97438 * 7 6 5 9 9 N 1.46908 * 109.46935 * 90.02783 * 8 7 6 10 10 C 1.46894 * 110.99837 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47104 * 324.99694 * 10 9 8 12 12 C 1.52997 * 109.47515 * 84.99962 * 10 9 8 13 13 C 1.50708 * 109.46991 * 205.00145 * 10 9 8 14 14 H 1.08000 * 119.99723 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99930 * 179.97438 * 13 10 9 16 16 N 1.31509 * 120.00195 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99968 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46680 * 60.00159 * 17 15 13 19 19 H 1.48492 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 300.00675 * 17 15 13 21 21 S 1.70982 * 124.91415 * 120.28930 * 4 2 1 22 22 H 1.08994 * 109.47581 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46909 * 300.00482 * 1 2 3 24 24 H 1.09003 * 109.46968 * 59.99554 * 1 2 3 25 25 H 1.09000 * 109.46849 * 240.00304 * 2 1 3 26 26 H 1.09001 * 109.47577 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47488 * 300.00127 * 3 2 1 28 28 H 1.09000 * 109.47547 * 59.99908 * 3 2 1 29 29 H 1.07998 * 122.74920 * 180.02562 * 6 5 4 30 30 H 1.08993 * 109.47103 * 330.02924 * 8 7 6 31 31 H 1.09002 * 109.47193 * 210.02440 * 8 7 6 32 32 H 1.00898 * 110.99816 * 56.04381 * 9 8 7 33 33 H 1.09002 * 109.47153 * 59.99762 * 12 10 9 34 34 H 1.09001 * 109.46832 * 299.99953 * 12 10 9 35 35 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 36 36 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7801 -0.3529 2.4442 6 6 2.2999 -1.0873 3.4071 7 6 3.0308 -2.1221 2.9818 8 6 3.7407 -3.1246 3.8550 9 7 2.8406 -4.2501 4.1397 10 6 3.5000 -5.2492 4.9910 11 1 4.5578 -5.3044 4.7337 12 6 3.3527 -4.8453 6.4593 13 6 2.8593 -6.5959 4.7736 14 1 2.0435 -6.6990 4.0735 15 6 3.3146 -7.6961 5.4686 16 7 4.3076 -7.5705 6.3216 17 14 2.5199 -9.3652 5.1998 18 1 2.6619 -9.7571 3.7745 19 1 3.1866 -10.3752 6.0602 20 1 1.0790 -9.2897 5.5512 21 16 3.0252 -2.1023 1.2200 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 2.1471 -0.8711 4.4542 30 1 4.0340 -2.6483 4.7904 31 1 4.6287 -3.4909 3.3397 32 1 2.5032 -4.6683 3.2857 33 1 2.2950 -4.7901 6.7166 34 1 3.8162 -3.8714 6.6164 35 1 3.8417 -5.5870 7.0910 36 1 4.6278 -8.3445 6.8108 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134971554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:58 Heat of formation + Delta-G solvation = 8.181291 kcal Electronic energy + Delta-G solvation = -16170.120865 eV Core-core repulsion = 13586.636532 eV Total energy + Delta-G solvation = -2583.484333 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78883 -37.96708 -36.33909 -34.69968 -32.10268 -29.49822 -28.02354 -27.44190 -26.79035 -24.72678 -22.76084 -21.79723 -19.75921 -19.07612 -18.45905 -17.00134 -16.53336 -15.88211 -15.73424 -15.45494 -15.12557 -15.09594 -14.74472 -14.01139 -13.80715 -13.67298 -13.15782 -12.96440 -12.85401 -12.73752 -12.54096 -12.35950 -12.24085 -12.13993 -12.09923 -11.97312 -11.83051 -10.95912 -10.61293 -10.52094 -10.23300 -9.74443 -9.15302 -8.15424 -6.29996 -0.24769 0.37320 0.79048 1.41991 1.43891 1.51496 1.86668 2.40492 3.13351 3.16013 3.64728 3.91252 3.93755 4.12118 4.18018 4.21490 4.56174 4.61325 4.78924 4.83315 4.87998 4.90528 4.96769 5.05675 5.08185 5.17423 5.21392 5.35931 5.42726 5.44732 5.62972 5.81634 6.19175 6.37676 6.67025 6.77844 6.91532 7.40373 8.89997 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.004185 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.803699 B = 6689.594875 C = 7014.879522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.018 4.018 3 C -0.134 4.134 4 C 0.050 3.950 5 N -0.488 5.488 6 C 0.041 3.959 7 C -0.219 4.219 8 C 0.140 3.860 9 N -0.680 5.680 10 C 0.216 3.784 11 H -0.025 1.025 12 C -0.114 4.114 13 C -0.541 4.541 14 H 0.058 0.942 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.272 1.272 21 S 0.124 5.876 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.179 0.821 30 H 0.087 0.913 31 H 0.030 0.970 32 H 0.331 0.669 33 H 0.027 0.973 34 H 0.025 0.975 35 H 0.058 0.942 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.518 14.664 -13.335 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 C -0.193 4.193 4 C -0.228 4.228 5 N -0.202 5.202 6 C -0.110 4.110 7 C -0.340 4.340 8 C 0.009 3.991 9 N -0.311 5.311 10 C 0.107 3.893 11 H -0.007 1.007 12 C -0.172 4.172 13 C -0.580 4.580 14 H 0.076 0.924 15 C -0.184 4.184 16 N -0.555 5.555 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.198 1.198 21 S 0.380 5.620 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.125 0.875 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.148 0.852 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.572 14.707 -13.350 20.181 hybrid contribution 0.355 -1.335 0.761 1.577 sum -3.217 13.371 -12.589 18.645 Atomic orbital electron populations 1.21782 0.92374 1.02137 1.03203 1.20053 0.97279 0.96482 0.90243 1.21773 1.00966 0.93357 1.03212 1.27630 1.00073 0.97549 0.97519 1.66222 1.23734 1.31080 0.99191 1.21802 0.96619 0.92266 1.00305 1.25872 1.08483 1.03287 0.96406 1.20200 0.92193 0.90062 0.96650 1.60738 1.38506 1.10879 1.20945 1.18957 0.90943 0.88640 0.90721 1.00724 1.21552 0.98961 0.97957 0.98760 1.21529 1.18245 0.93543 1.24657 0.92409 1.25705 0.95385 1.02679 0.94608 1.70004 1.27298 1.31344 1.26879 0.85550 0.78621 0.78834 0.78258 1.19502 1.20788 1.19762 1.83853 1.47635 1.27562 1.02941 0.93195 0.92974 0.89169 0.87535 0.92780 0.89251 0.92936 0.80444 0.89508 0.95167 0.85186 0.95403 0.95583 0.92278 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.17 71.98 0.66 -1.57 16 2 C -0.02 -0.32 3.35 -11.54 -0.04 -0.36 16 3 C -0.13 -2.02 9.17 71.98 0.66 -1.36 16 4 C 0.05 1.26 5.90 88.52 0.52 1.78 16 5 N -0.49 -14.31 10.53 -191.45 -2.02 -16.33 16 6 C 0.04 1.27 11.25 83.66 0.94 2.21 16 7 C -0.22 -6.93 6.11 24.64 0.15 -6.78 16 8 C 0.14 5.07 6.02 85.56 0.51 5.58 16 9 N -0.68 -29.21 6.29 -499.44 -3.14 -32.35 16 10 C 0.22 11.00 2.60 44.17 0.11 11.12 16 11 H -0.02 -1.38 7.80 -2.39 -0.02 -1.40 16 12 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 13 C -0.54 -29.84 8.59 25.60 0.22 -29.62 16 14 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 15 C 0.02 0.87 5.30 84.65 0.45 1.32 16 16 N -0.92 -52.54 11.32 21.44 0.24 -52.30 16 17 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 S 0.12 3.26 23.17 -56.49 -1.31 1.96 16 22 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.11 1.44 8.12 -2.39 -0.02 1.43 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.18 5.13 8.06 -2.91 -0.02 5.10 16 30 H 0.09 3.08 7.43 -2.39 -0.02 3.07 16 31 H 0.03 1.11 8.06 -2.39 -0.02 1.09 16 32 H 0.33 14.18 8.22 -89.70 -0.74 13.44 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.03 1.14 7.45 -2.39 -0.02 1.12 16 35 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 36 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -60.95 312.96 0.98 -59.96 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.32 Total: 16.41 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.86 Total: -22.70 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.91 Total: -100.98 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.31 Total: 1.96 kcal Total: -60.95 0.98 -59.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134971554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.144 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds