Wall clock time and date at job start Mon Mar 30 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 162.18558 * 3 2 1 5 5 C 1.52997 * 109.47306 * 322.87033 * 4 3 2 6 6 N 1.46500 * 109.47473 * 179.97438 * 5 4 3 7 7 C 1.37845 * 126.53422 * 90.02224 * 6 5 4 8 8 C 1.40192 * 125.30706 * 359.97108 * 7 6 5 9 9 H 1.07995 * 120.00016 * 359.97438 * 8 7 6 10 10 C 1.40351 * 119.99858 * 179.97438 * 8 7 6 11 11 N 1.30583 * 120.00086 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47080 * 60.00191 * 12 10 8 14 14 H 1.48499 * 109.47314 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47407 * 300.00178 * 12 10 8 16 16 N 1.32472 * 109.39134 * 179.97438 * 7 6 5 17 17 C 1.33975 * 109.77740 * 0.02562 * 16 7 6 18 18 C 1.40532 * 133.19662 * 180.02562 * 17 16 7 19 19 C 1.36354 * 119.85329 * 179.97438 * 18 17 16 20 20 C 1.39043 * 120.75485 * 359.97438 * 19 18 17 21 21 C 1.37964 * 120.57570 * 0.03015 * 20 19 18 22 22 C 1.37959 * 126.53602 * 269.71568 * 6 5 4 23 23 H 1.08992 * 109.47387 * 294.94171 * 1 2 3 24 24 H 1.09004 * 109.47019 * 54.94831 * 1 2 3 25 25 H 1.09001 * 109.46457 * 174.94463 * 1 2 3 26 26 H 1.09002 * 109.47132 * 82.87190 * 4 3 2 27 27 H 1.09001 * 109.47213 * 202.87220 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.00144 * 5 4 3 29 29 H 1.08998 * 109.47533 * 59.99773 * 5 4 3 30 30 H 0.97008 * 119.99997 * 180.02562 * 11 10 8 31 31 H 1.08003 * 120.07209 * 359.96864 * 18 17 16 32 32 H 1.07996 * 119.62231 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.71175 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.12118 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 6 4.6292 -1.1478 0.8704 6 7 6.0942 -1.1469 0.8698 7 6 6.9148 -0.4781 1.7526 8 6 6.4779 0.3260 2.8147 9 1 5.4209 0.4598 2.9913 10 6 7.4141 0.9570 3.6484 11 7 8.6922 0.7948 3.4351 12 14 6.8320 2.0289 5.0631 13 1 6.0120 1.2149 5.9961 14 1 8.0080 2.5755 5.7866 15 1 6.0130 3.1479 4.5320 16 7 8.1806 -0.7134 1.4410 17 6 8.2422 -1.5208 0.3736 18 6 9.3098 -2.0722 -0.3551 19 6 9.0565 -2.8809 -1.4233 20 6 7.7503 -3.1691 -1.8029 21 6 6.6838 -2.6408 -1.1050 22 6 6.9155 -1.8200 -0.0109 23 1 -0.3634 0.4333 0.9317 24 1 -0.3633 0.5902 -0.8413 25 1 -0.3632 -1.0237 -0.0906 26 1 4.4813 -0.1254 -1.0200 27 1 4.4806 0.9490 0.3992 28 1 4.2659 -1.0206 1.8902 29 1 4.2667 -2.0950 0.4712 30 1 9.3393 1.2306 4.0116 31 1 10.3288 -1.8559 -0.0696 32 1 9.8797 -3.3030 -1.9804 33 1 7.5689 -3.8114 -2.6520 34 1 5.6722 -2.8692 -1.4065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168672009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:50 Heat of formation + Delta-G solvation = 102.230230 kcal Electronic energy + Delta-G solvation = -17531.619966 eV Core-core repulsion = 14816.769950 eV Total energy + Delta-G solvation = -2714.850017 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41098 -36.28424 -35.14681 -33.60477 -32.98416 -30.67431 -29.11934 -28.58589 -26.90545 -25.84992 -23.28379 -21.36463 -20.66554 -19.43321 -17.04317 -16.58377 -16.21753 -15.71102 -14.85825 -14.41089 -14.20238 -14.03741 -13.69287 -13.47177 -13.28473 -12.83661 -12.71359 -12.57427 -12.23964 -11.59512 -11.42527 -11.37777 -10.91698 -10.62183 -10.58384 -10.37357 -10.24438 -9.80418 -9.53785 -9.32458 -8.99864 -7.92474 -7.26181 -6.88410 -6.69459 -4.65125 2.24300 2.65036 2.83572 2.85988 2.99780 3.01340 3.02973 3.75250 3.97005 4.11990 4.48572 4.93543 5.25629 5.39174 5.49042 5.50041 5.58963 5.62628 5.66030 5.74739 5.84969 5.96731 6.05739 6.10413 6.25983 6.41203 6.54013 6.71210 6.84946 6.97905 7.24198 7.45179 7.60436 7.70980 7.77775 7.89487 7.96466 8.29991 8.61164 8.98706 9.92877 10.19444 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.009682 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.535195 B = 2891.412553 C = 5457.045570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.211 4.211 3 C -0.166 4.166 4 C -0.026 4.026 5 C 0.142 3.858 6 N -0.540 5.540 7 C 0.420 3.580 8 C -0.440 4.440 9 H 0.087 0.913 10 C 0.078 3.922 11 N -0.715 5.715 12 Si 0.917 3.083 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.264 1.264 16 N -0.536 5.536 17 C 0.111 3.889 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.182 4.182 21 C -0.102 4.102 22 C -0.006 4.006 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.280 0.720 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 -0.989 -3.510 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.211 4.211 3 C -0.167 4.167 4 C -0.064 4.064 5 C 0.017 3.983 6 N -0.236 5.236 7 C 0.184 3.816 8 C -0.478 4.478 9 H 0.105 0.895 10 C -0.150 4.150 11 N -0.337 5.337 12 Si 0.740 3.260 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.188 1.188 16 N -0.259 5.259 17 C -0.017 4.017 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.203 4.203 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.538 -0.603 -2.980 9.063 hybrid contribution -1.026 0.146 0.125 1.044 sum -9.565 -0.457 -2.855 9.992 Atomic orbital electron populations 1.18780 0.84823 1.02688 1.02721 1.22311 0.93822 1.02385 1.02585 1.22304 0.93367 1.00562 1.00436 1.19134 0.83930 1.01476 1.01876 1.21108 0.79205 0.97309 1.00665 1.45499 1.04281 1.45213 1.28616 1.20458 0.83260 0.89351 0.88517 1.18478 0.94682 1.25590 1.09015 0.89507 1.25852 0.94387 0.96339 0.98424 1.69963 1.01493 1.30200 1.32006 0.86234 0.79256 0.80165 0.80336 1.18835 1.19934 1.18816 1.71408 1.15844 1.23014 1.15641 1.19569 0.90932 0.96352 0.94808 1.19778 0.96717 1.01397 0.97184 1.20219 0.95858 1.00354 0.97899 1.20291 0.92290 1.05595 1.02116 1.19602 0.97756 0.99800 0.95249 1.18882 0.92589 1.02970 0.96878 0.90441 0.90549 0.90495 0.89555 0.88517 0.89604 0.91083 0.90859 0.87394 0.87813 0.87859 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.32 10.32 34.37 0.35 0.03 16 2 C -0.21 -2.99 14.13 -37.12 -0.52 -3.52 16 3 C -0.17 -2.65 13.34 -37.13 -0.50 -3.14 16 4 C -0.03 -0.45 6.03 -29.52 -0.18 -0.63 16 5 C 0.14 2.64 5.86 -4.04 -0.02 2.61 16 6 N -0.54 -12.60 2.86 -113.48 -0.32 -12.92 16 7 C 0.42 11.22 7.41 -155.68 -1.15 10.07 16 8 C -0.44 -11.16 8.99 -38.05 -0.34 -11.50 16 9 H 0.09 2.00 7.10 -52.49 -0.37 1.62 16 10 C 0.08 1.91 5.50 -17.29 -0.10 1.81 16 11 N -0.71 -18.87 11.85 55.57 0.66 -18.21 16 12 Si 0.92 17.88 29.56 -169.99 -5.03 12.86 16 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 15 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 16 N -0.54 -15.33 9.33 -10.31 -0.10 -15.43 16 17 C 0.11 2.90 7.21 -84.89 -0.61 2.29 16 18 C -0.13 -2.97 10.07 -39.40 -0.40 -3.37 16 19 C -0.12 -2.42 9.96 -39.96 -0.40 -2.82 16 20 C -0.18 -3.50 10.04 -39.38 -0.40 -3.89 16 21 C -0.10 -2.11 10.04 -39.50 -0.40 -2.51 16 22 C -0.01 -0.14 6.88 -83.75 -0.58 -0.72 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 28 H 0.09 1.56 7.32 -51.93 -0.38 1.18 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 31 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 32 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -30.37 304.50 -9.55 -39.92 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.11 Total: 4.48 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -5.23 Total: -15.28 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.24 Total: -46.56 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.37 -9.55 -39.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168672009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.146 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds