Wall clock time and date at job start Mon Mar 30 2020 06:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47206 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47194 * 179.97438 * 162.18558 * 3 2 1 5 5 C 1.52997 * 109.47306 * 322.87033 * 4 3 2 6 6 N 1.46500 * 109.47473 * 179.97438 * 5 4 3 7 7 C 1.37845 * 126.53422 * 90.02224 * 6 5 4 8 8 C 1.40192 * 125.30706 * 359.97108 * 7 6 5 9 9 H 1.07995 * 120.00016 * 359.97438 * 8 7 6 10 10 C 1.40351 * 119.99858 * 179.97438 * 8 7 6 11 11 N 1.30583 * 120.00086 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47080 * 60.00191 * 12 10 8 14 14 H 1.48499 * 109.47314 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47407 * 300.00178 * 12 10 8 16 16 N 1.32472 * 109.39134 * 179.97438 * 7 6 5 17 17 C 1.33975 * 109.77740 * 0.02562 * 16 7 6 18 18 C 1.40532 * 133.19662 * 180.02562 * 17 16 7 19 19 C 1.36354 * 119.85329 * 179.97438 * 18 17 16 20 20 C 1.39043 * 120.75485 * 359.97438 * 19 18 17 21 21 C 1.37964 * 120.57570 * 0.03015 * 20 19 18 22 22 C 1.37959 * 126.53602 * 269.71568 * 6 5 4 23 23 H 1.08992 * 109.47387 * 294.94171 * 1 2 3 24 24 H 1.09004 * 109.47019 * 54.94831 * 1 2 3 25 25 H 1.09001 * 109.46457 * 174.94463 * 1 2 3 26 26 H 1.09002 * 109.47132 * 82.87190 * 4 3 2 27 27 H 1.09001 * 109.47213 * 202.87220 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.00144 * 5 4 3 29 29 H 1.08998 * 109.47533 * 59.99773 * 5 4 3 30 30 H 0.97008 * 119.99997 * 180.02562 * 11 10 8 31 31 H 1.08003 * 120.07209 * 359.96864 * 18 17 16 32 32 H 1.07996 * 119.62231 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.71175 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.12118 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4721 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 -0.0002 5 6 4.6292 -1.1478 0.8704 6 7 6.0942 -1.1469 0.8698 7 6 6.9148 -0.4781 1.7526 8 6 6.4779 0.3260 2.8147 9 1 5.4209 0.4598 2.9913 10 6 7.4141 0.9570 3.6484 11 7 8.6922 0.7948 3.4351 12 14 6.8320 2.0289 5.0631 13 1 6.0120 1.2149 5.9961 14 1 8.0080 2.5755 5.7866 15 1 6.0130 3.1479 4.5320 16 7 8.1806 -0.7134 1.4410 17 6 8.2422 -1.5208 0.3736 18 6 9.3098 -2.0722 -0.3551 19 6 9.0565 -2.8809 -1.4233 20 6 7.7503 -3.1691 -1.8029 21 6 6.6838 -2.6408 -1.1050 22 6 6.9155 -1.8200 -0.0109 23 1 -0.3634 0.4333 0.9317 24 1 -0.3633 0.5902 -0.8413 25 1 -0.3632 -1.0237 -0.0906 26 1 4.4813 -0.1254 -1.0200 27 1 4.4806 0.9490 0.3992 28 1 4.2659 -1.0206 1.8902 29 1 4.2667 -2.0950 0.4712 30 1 9.3393 1.2306 4.0116 31 1 10.3288 -1.8559 -0.0696 32 1 9.8797 -3.3030 -1.9804 33 1 7.5689 -3.8114 -2.6520 34 1 5.6722 -2.8692 -1.4065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168672009.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:49 Heat of formation + Delta-G solvation = 86.860027 kcal Electronic energy + Delta-G solvation = -17532.286468 eV Core-core repulsion = 14816.769950 eV Total energy + Delta-G solvation = -2715.516519 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19037 -37.93437 -36.56701 -35.33532 -34.42075 -32.11832 -30.77062 -30.26998 -28.11675 -27.64642 -24.74713 -23.14637 -22.39244 -21.18022 -18.84209 -17.98785 -17.89703 -17.17875 -16.55142 -15.83105 -15.77515 -15.63265 -14.83649 -14.60276 -14.47449 -14.43168 -14.18925 -14.04302 -13.66156 -13.28377 -13.02260 -12.94401 -12.43497 -12.34053 -12.20430 -11.99847 -11.89184 -11.22957 -10.94033 -10.67596 -10.63366 -9.82656 -9.04983 -8.65152 -8.51115 -6.56638 0.50667 0.98720 1.39531 1.45775 1.53854 1.63266 1.71466 2.13547 2.33911 2.36222 3.15927 3.35675 3.61081 3.80113 3.95504 4.13149 4.28489 4.31013 4.45328 4.60467 4.64702 4.78672 4.83086 4.85802 4.88706 4.90695 4.99274 5.09071 5.16296 5.23994 5.55922 5.66819 5.91648 5.95086 6.14890 6.22521 6.52766 6.64642 6.77177 7.16358 8.06075 8.41307 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.010494 B = 0.009682 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.535195 B = 2891.412553 C = 5457.045570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.182 4.182 3 C -0.221 4.221 4 C -0.009 4.009 5 C 0.141 3.859 6 N -0.540 5.540 7 C 0.393 3.607 8 C -0.468 4.468 9 H 0.100 0.900 10 C 0.032 3.968 11 N -0.767 5.767 12 Si 0.997 3.003 13 H -0.254 1.254 14 H -0.269 1.269 15 H -0.255 1.255 16 N -0.584 5.584 17 C 0.055 3.945 18 C -0.148 4.148 19 C -0.115 4.115 20 C -0.163 4.163 21 C -0.106 4.106 22 C -0.023 4.023 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.284 0.716 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -1.866 -4.727 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.182 4.182 3 C -0.221 4.221 4 C -0.046 4.046 5 C 0.018 3.982 6 N -0.235 5.235 7 C 0.154 3.846 8 C -0.505 4.505 9 H 0.118 0.882 10 C -0.191 4.191 11 N -0.390 5.390 12 Si 0.816 3.184 13 H -0.178 1.178 14 H -0.193 1.193 15 H -0.179 1.179 16 N -0.309 5.309 17 C -0.071 4.071 18 C -0.169 4.169 19 C -0.135 4.135 20 C -0.183 4.183 21 C -0.128 4.128 22 C -0.130 4.130 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.038 -1.513 -4.242 11.921 hybrid contribution -0.298 0.257 0.287 0.486 sum -11.335 -1.256 -3.956 12.071 Atomic orbital electron populations 1.19144 0.81422 1.04568 1.04478 1.23391 0.95031 0.99742 1.00050 1.22158 0.93451 1.03366 1.03164 1.18755 0.85248 0.99696 1.00937 1.21315 0.76784 0.98878 1.01206 1.45629 1.05727 1.44379 1.27776 1.20781 0.83709 0.90407 0.89663 1.18900 0.95618 1.26420 1.09606 0.88226 1.26939 0.94111 0.97156 1.00883 1.70105 1.03086 1.32039 1.33762 0.85043 0.78845 0.78088 0.76419 1.17838 1.19322 1.17906 1.71261 1.17624 1.24642 1.17383 1.20108 0.93219 0.98013 0.95723 1.20065 0.96075 1.02439 0.98365 1.20676 0.97778 0.98592 0.96472 1.20897 0.91353 1.03958 1.02076 1.20044 0.99928 0.98753 0.94048 1.19288 0.91898 1.03817 0.97990 0.88712 0.88480 0.88445 0.89980 0.90552 0.89750 0.89312 0.90548 0.87817 0.83767 0.83224 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.61 10.32 70.18 0.72 0.12 16 2 C -0.18 -4.76 14.13 31.13 0.44 -4.32 16 3 C -0.22 -6.90 13.34 31.12 0.42 -6.48 16 4 C -0.01 -0.30 6.03 28.79 0.17 -0.12 16 5 C 0.14 5.34 5.86 86.38 0.51 5.85 16 6 N -0.54 -26.09 2.86 -512.94 -1.46 -27.56 16 7 C 0.39 22.19 7.41 133.69 0.99 23.19 16 8 C -0.47 -24.90 8.99 23.26 0.21 -24.69 16 9 H 0.10 4.78 7.10 -2.91 -0.02 4.76 16 10 C 0.03 1.63 5.50 85.39 0.47 2.10 16 11 N -0.77 -42.86 11.85 21.89 0.26 -42.60 16 12 Si 1.00 37.58 29.56 68.60 2.03 39.61 16 13 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 14 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 15 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 16 N -0.58 -35.59 9.33 -186.52 -1.74 -37.33 16 17 C 0.05 2.98 7.21 40.14 0.29 3.27 16 18 C -0.15 -6.93 10.07 22.39 0.23 -6.70 16 19 C -0.12 -4.27 9.96 22.02 0.22 -4.05 16 20 C -0.16 -5.63 10.04 22.40 0.22 -5.41 16 21 C -0.11 -4.17 10.04 22.32 0.22 -3.95 16 22 C -0.02 -1.09 6.88 39.06 0.27 -0.82 16 23 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.08 3.16 7.32 -2.39 -0.02 3.15 16 29 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.28 14.34 8.29 -92.70 -0.77 13.57 16 31 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 32 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 34 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -71.07 304.50 5.57 -65.51 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.10 Total: 24.40 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 5.38 Total: -22.03 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -2.95 Total: -107.48 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -71.07 5.57 -65.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168672009.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.366 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds