Wall clock time and date at job start Mon Mar 30 2020 07:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 C 1.53002 * 109.47119 * 120.00155 * 2 1 3 5 5 H 1.08996 * 115.56384 * 274.81087 * 4 2 1 6 6 C 1.53000 * 117.49896 * 129.11751 * 4 2 1 7 7 C 1.52992 * 60.00455 * 252.51261 * 6 4 2 8 8 H 1.08994 * 117.49888 * 252.48790 * 7 6 4 9 9 C 1.50701 * 117.49773 * 107.48704 * 7 6 4 10 10 O 1.20821 * 120.00175 * 337.30772 * 9 7 6 11 11 O 1.34230 * 119.99901 * 157.30494 * 9 7 6 12 12 C 1.45200 * 116.99982 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.47071 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46940 * 300.00044 * 13 12 11 15 15 C 1.53003 * 109.47163 * 59.99660 * 13 12 11 16 16 C 1.50699 * 109.46922 * 180.02562 * 13 12 11 17 17 H 1.07997 * 120.00233 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99371 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00425 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99477 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46943 * 59.99856 * 20 18 16 22 22 H 1.48505 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47422 * 299.99848 * 20 18 16 24 24 H 1.09004 * 109.47385 * 289.99063 * 1 2 3 25 25 H 1.08998 * 109.47304 * 49.98981 * 1 2 3 26 26 H 1.09003 * 109.47514 * 169.98727 * 1 2 3 27 27 H 1.09002 * 109.47135 * 240.00226 * 2 1 3 28 28 H 1.09000 * 109.46954 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47588 * 299.99798 * 3 2 1 30 30 H 1.08996 * 109.47274 * 59.99999 * 3 2 1 31 31 H 1.09007 * 117.49899 * 145.01684 * 6 4 2 32 32 H 1.09008 * 117.52093 * 359.97438 * 6 4 2 33 33 H 1.08997 * 109.47224 * 60.00088 * 12 11 9 34 34 H 1.08996 * 109.46841 * 299.99939 * 12 11 9 35 35 H 1.09002 * 109.47454 * 59.99734 * 14 13 12 36 36 H 1.08999 * 109.47020 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47481 * 300.00031 * 14 13 12 38 38 H 1.09001 * 109.46401 * 60.00144 * 15 13 12 39 39 H 1.08999 * 109.46784 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47033 * 300.00144 * 15 13 12 41 41 H 0.97001 * 119.99969 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 2.1190 -0.1083 2.1470 6 6 3.0827 -1.8235 1.0524 7 6 1.6453 -2.1887 1.4283 8 1 1.4649 -2.5413 2.4437 9 6 0.7841 -2.8129 0.3607 10 8 1.0508 -2.6446 -0.8056 11 8 -0.2793 -3.5558 0.7056 12 6 -1.0632 -4.1265 -0.3752 13 6 -2.2248 -4.9336 0.2083 14 6 -1.6737 -6.0580 1.0874 15 6 -3.1114 -4.0149 1.0515 16 6 -3.0380 -5.5263 -0.9135 17 1 -2.7550 -5.3452 -1.9399 18 6 -4.1440 -6.2991 -0.6294 19 7 -4.4889 -6.5193 0.6204 20 14 -5.1525 -7.0333 -2.0199 21 1 -4.2920 -7.9253 -2.8379 22 1 -6.2798 -7.8168 -1.4536 23 1 -5.6870 -5.9420 -2.8735 24 1 -0.3634 0.3513 0.9658 25 1 -0.3634 0.6607 -0.7871 26 1 -0.3634 -1.0120 -0.1787 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.8479 -1.9354 1.8206 32 1 3.4053 -2.0353 0.0329 33 1 -0.4315 -4.7805 -0.9762 34 1 -1.4562 -3.3254 -1.0012 35 1 -1.0851 -5.6296 1.8987 36 1 -2.5011 -6.6333 1.5027 37 1 -1.0420 -6.7125 0.4867 38 1 -3.5040 -3.2139 0.4252 39 1 -3.9391 -4.5899 1.4668 40 1 -2.5228 -3.5866 1.8629 41 1 -5.2668 -7.0633 0.8203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184695162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:46 Heat of formation + Delta-G solvation = -85.620929 kcal Electronic energy + Delta-G solvation = -19713.585395 eV Core-core repulsion = 16786.820965 eV Total energy + Delta-G solvation = -2926.764430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41864 -37.99684 -36.12814 -34.75498 -33.42774 -31.24453 -27.23709 -26.33239 -25.59931 -25.23865 -23.94694 -22.95749 -20.58020 -19.49620 -18.82435 -17.18442 -16.08297 -15.82787 -15.65987 -15.10766 -14.72952 -14.04841 -13.78760 -13.33003 -13.06152 -12.77562 -12.55755 -12.24055 -12.17277 -11.69192 -11.44576 -11.32989 -11.19867 -11.14697 -10.93095 -10.83450 -10.72600 -10.39378 -10.30381 -10.17621 -10.07197 -9.88960 -9.84679 -9.38136 -9.27614 -8.74804 -8.36147 -6.00547 -4.12243 2.46432 3.21184 3.30186 3.34568 3.39073 3.82434 4.39095 4.48793 4.73282 4.80341 5.02638 5.24335 5.25658 5.29877 5.37605 5.50655 5.64960 5.68596 5.83758 5.86207 5.94798 5.99039 6.11761 6.12857 6.15009 6.38447 6.44492 6.50136 6.77950 7.00261 7.12009 7.16408 7.19495 7.42893 7.63986 7.71089 8.06664 8.17652 8.33576 8.42249 8.87447 9.53110 11.00583 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.004777 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.066093 B = 5860.566332 C = 6081.390126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.074 4.074 3 C -0.141 4.141 4 C -0.111 4.111 5 H 0.115 0.885 6 C -0.145 4.145 7 C -0.168 4.168 8 H 0.130 0.870 9 C 0.487 3.513 10 O -0.520 6.520 11 O -0.346 6.346 12 C 0.086 3.914 13 C 0.070 3.930 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.512 4.512 17 H 0.056 0.944 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.536 11.000 3.017 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.198 4.198 4 C -0.129 4.129 5 H 0.133 0.867 6 C -0.182 4.182 7 C -0.187 4.187 8 H 0.147 0.853 9 C 0.332 3.668 10 O -0.411 6.411 11 O -0.261 6.261 12 C 0.013 3.987 13 C 0.070 3.930 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.133 4.133 19 N -0.520 5.520 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.102 0.898 40 H 0.035 0.965 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.410 10.911 2.772 16.028 hybrid contribution -0.637 -0.543 -0.837 1.184 sum 10.772 10.367 1.935 15.075 Atomic orbital electron populations 1.21906 0.94778 1.02526 1.01494 1.20817 0.96058 0.95667 0.96731 1.21793 1.00770 0.95606 1.01677 1.22513 1.01315 0.88572 1.00531 0.86688 1.23183 0.89959 1.01232 1.03820 1.21835 0.97556 0.99931 0.99404 0.85252 1.22273 0.80008 0.76052 0.88507 1.90596 1.71012 1.58872 1.20605 1.86508 1.37522 1.60016 1.42096 1.23651 0.92141 0.96029 0.86881 1.18239 0.88779 0.91365 0.94648 1.21765 1.00087 0.99142 0.97669 1.21761 1.01093 0.98086 0.97696 1.20898 1.10775 1.31420 0.91951 0.92608 1.24850 0.96988 0.95863 0.95597 1.69820 1.26395 1.38684 1.17130 0.86609 0.79651 0.79242 0.82202 1.20255 1.21200 1.20252 0.92765 0.92584 0.92307 0.89493 0.92721 0.92611 0.92802 0.87679 0.87532 0.92653 0.92668 0.96470 0.89760 0.95885 0.95885 0.89770 0.96451 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.74 37.15 0.32 -1.73 16 2 C -0.07 -0.90 2.31 -90.62 -0.21 -1.11 16 3 C -0.14 -1.33 9.16 37.15 0.34 -0.99 16 4 C -0.11 -1.23 5.12 -90.62 -0.46 -1.70 16 5 H 0.12 1.03 8.12 -51.93 -0.42 0.61 16 6 C -0.15 -1.57 9.69 -26.74 -0.26 -1.83 16 7 C -0.17 -2.25 6.21 -91.77 -0.57 -2.82 16 8 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 9 C 0.49 8.75 5.23 36.01 0.19 8.93 16 10 O -0.52 -10.20 13.43 -18.75 -0.25 -10.45 16 11 O -0.35 -7.09 8.88 -39.26 -0.35 -7.44 16 12 C 0.09 1.94 4.26 37.16 0.16 2.10 16 13 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 14 C -0.13 -3.16 8.11 37.16 0.30 -2.85 16 15 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 16 C -0.51 -13.83 8.01 -34.44 -0.28 -14.10 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.85 5.15 -17.82 -0.09 1.75 16 19 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 25 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 26 H 0.06 0.99 5.10 -51.93 -0.26 0.72 16 27 H 0.09 1.23 6.67 -51.93 -0.35 0.88 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.11 1.27 7.76 -51.92 -0.40 0.87 16 33 H 0.06 1.27 8.13 -51.93 -0.42 0.84 16 34 H 0.05 1.26 8.13 -51.93 -0.42 0.83 16 35 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 36 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 40 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 41 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -28.29 323.89 -7.62 -35.91 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.05 Total: 0.31 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.35 Total: -15.55 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.52 Total: -23.58 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.60 Total: -17.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.29 -7.62 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.714 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds