Wall clock time and date at job start Mon Mar 30 2020 07:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 C 1.53002 * 109.47119 * 120.00155 * 2 1 3 5 5 H 1.08996 * 115.56384 * 274.81087 * 4 2 1 6 6 C 1.53000 * 117.49896 * 129.11751 * 4 2 1 7 7 C 1.52992 * 60.00455 * 252.51261 * 6 4 2 8 8 H 1.08994 * 117.49888 * 252.48790 * 7 6 4 9 9 C 1.50701 * 117.49773 * 107.48704 * 7 6 4 10 10 O 1.20821 * 120.00175 * 337.30772 * 9 7 6 11 11 O 1.34230 * 119.99901 * 157.30494 * 9 7 6 12 12 C 1.45200 * 116.99982 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.47071 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46940 * 300.00044 * 13 12 11 15 15 C 1.53003 * 109.47163 * 59.99660 * 13 12 11 16 16 C 1.50699 * 109.46922 * 180.02562 * 13 12 11 17 17 H 1.07997 * 120.00233 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99371 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00425 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99477 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46943 * 59.99856 * 20 18 16 22 22 H 1.48505 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47422 * 299.99848 * 20 18 16 24 24 H 1.09004 * 109.47385 * 289.99063 * 1 2 3 25 25 H 1.08998 * 109.47304 * 49.98981 * 1 2 3 26 26 H 1.09003 * 109.47514 * 169.98727 * 1 2 3 27 27 H 1.09002 * 109.47135 * 240.00226 * 2 1 3 28 28 H 1.09000 * 109.46954 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47588 * 299.99798 * 3 2 1 30 30 H 1.08996 * 109.47274 * 59.99999 * 3 2 1 31 31 H 1.09007 * 117.49899 * 145.01684 * 6 4 2 32 32 H 1.09008 * 117.52093 * 359.97438 * 6 4 2 33 33 H 1.08997 * 109.47224 * 60.00088 * 12 11 9 34 34 H 1.08996 * 109.46841 * 299.99939 * 12 11 9 35 35 H 1.09002 * 109.47454 * 59.99734 * 14 13 12 36 36 H 1.08999 * 109.47020 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47481 * 300.00031 * 14 13 12 38 38 H 1.09001 * 109.46401 * 60.00144 * 15 13 12 39 39 H 1.08999 * 109.46784 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47033 * 300.00144 * 15 13 12 41 41 H 0.97001 * 119.99969 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 2.1190 -0.1083 2.1470 6 6 3.0827 -1.8235 1.0524 7 6 1.6453 -2.1887 1.4283 8 1 1.4649 -2.5413 2.4437 9 6 0.7841 -2.8129 0.3607 10 8 1.0508 -2.6446 -0.8056 11 8 -0.2793 -3.5558 0.7056 12 6 -1.0632 -4.1265 -0.3752 13 6 -2.2248 -4.9336 0.2083 14 6 -1.6737 -6.0580 1.0874 15 6 -3.1114 -4.0149 1.0515 16 6 -3.0380 -5.5263 -0.9135 17 1 -2.7550 -5.3452 -1.9399 18 6 -4.1440 -6.2991 -0.6294 19 7 -4.4889 -6.5193 0.6204 20 14 -5.1525 -7.0333 -2.0199 21 1 -4.2920 -7.9253 -2.8379 22 1 -6.2798 -7.8168 -1.4536 23 1 -5.6870 -5.9420 -2.8735 24 1 -0.3634 0.3513 0.9658 25 1 -0.3634 0.6607 -0.7871 26 1 -0.3634 -1.0120 -0.1787 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.8479 -1.9354 1.8206 32 1 3.4053 -2.0353 0.0329 33 1 -0.4315 -4.7805 -0.9762 34 1 -1.4562 -3.3254 -1.0012 35 1 -1.0851 -5.6296 1.8987 36 1 -2.5011 -6.6333 1.5027 37 1 -1.0420 -6.7125 0.4867 38 1 -3.5040 -3.2139 0.4252 39 1 -3.9391 -4.5899 1.4668 40 1 -2.5228 -3.5866 1.8629 41 1 -5.2668 -7.0633 0.8203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184695162.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:45 Heat of formation + Delta-G solvation = -98.605440 kcal Electronic energy + Delta-G solvation = -19714.148446 eV Core-core repulsion = 16786.820965 eV Total energy + Delta-G solvation = -2927.327481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78463 -39.30168 -37.72979 -36.50540 -34.37478 -33.27004 -28.31227 -27.86217 -27.59693 -27.25292 -25.35812 -23.86776 -21.69648 -20.81788 -20.64364 -18.58574 -17.82198 -17.48913 -17.17997 -16.56441 -16.19420 -15.23319 -15.02487 -14.85060 -14.68910 -14.32416 -13.84321 -13.63287 -13.26835 -13.21363 -13.08236 -12.93797 -12.80850 -12.66550 -12.34470 -12.19034 -12.15672 -12.14433 -11.89455 -11.72017 -11.41737 -11.29549 -11.20200 -11.09415 -10.97474 -10.76249 -10.41622 -8.05621 -6.24155 1.14503 1.43626 1.43869 1.51271 1.82581 2.44639 2.82543 3.17484 3.53351 3.74134 3.82982 3.99396 4.16677 4.24856 4.26064 4.36930 4.41437 4.57720 4.63170 4.77016 4.79391 4.85881 4.87285 4.99916 5.02229 5.04122 5.17903 5.18277 5.20223 5.25523 5.33361 5.37969 5.51654 5.60304 5.61301 5.71816 6.05031 6.15576 6.35348 6.77928 6.88675 7.43759 8.93921 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.004777 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.066093 B = 5860.566332 C = 6081.390126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.135 4.135 4 C -0.099 4.099 5 H 0.149 0.851 6 C -0.127 4.127 7 C -0.189 4.189 8 H 0.147 0.853 9 C 0.481 3.519 10 O -0.544 6.544 11 O -0.355 6.355 12 C 0.101 3.899 13 C 0.061 3.939 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.536 4.536 17 H 0.047 0.953 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.280 1.280 23 H -0.275 1.275 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.810 12.202 3.982 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.192 4.192 4 C -0.116 4.116 5 H 0.167 0.833 6 C -0.164 4.164 7 C -0.208 4.208 8 H 0.165 0.835 9 C 0.328 3.672 10 O -0.436 6.436 11 O -0.271 6.271 12 C 0.027 3.973 13 C 0.060 3.940 14 C -0.175 4.175 15 C -0.174 4.174 16 C -0.574 4.574 17 H 0.066 0.934 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.778 3.222 21 H -0.200 1.200 22 H -0.205 1.205 23 H -0.200 1.200 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.160 0.840 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.697 12.121 3.741 17.948 hybrid contribution -0.992 -0.869 -1.151 1.750 sum 11.705 11.252 2.591 16.442 Atomic orbital electron populations 1.21905 0.96269 1.00254 1.02269 1.20807 0.94769 0.97556 0.96369 1.21739 1.01591 0.93431 1.02405 1.22729 1.00246 0.87559 1.01111 0.83316 1.23332 0.89265 0.99666 1.04126 1.21995 0.98551 1.01787 0.98507 0.83514 1.23237 0.79312 0.75115 0.89574 1.90582 1.71410 1.59522 1.22037 1.86492 1.38579 1.60859 1.41134 1.23173 0.91719 0.95308 0.87070 1.18269 0.89498 0.91817 0.94383 1.21608 0.99317 0.98735 0.97829 1.21597 1.00448 0.97516 0.97825 1.21155 1.11749 1.32293 0.92213 0.93435 1.25509 0.97795 0.96100 0.97705 1.69928 1.26586 1.38759 1.18402 0.85704 0.78321 0.78488 0.79640 1.20019 1.20503 1.20026 0.91487 0.92333 0.95980 0.92195 0.91333 0.92742 0.91284 0.84011 0.89078 0.93662 0.93733 0.95011 0.91717 0.96239 0.96290 0.91735 0.95043 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.74 71.98 0.63 -3.41 16 2 C -0.08 -1.74 2.31 -10.80 -0.02 -1.77 16 3 C -0.13 -2.17 9.16 71.98 0.66 -1.51 16 4 C -0.10 -1.89 5.12 -10.79 -0.06 -1.94 16 5 H 0.15 1.92 8.12 -2.39 -0.02 1.90 16 6 C -0.13 -2.38 9.69 30.59 0.30 -2.08 16 7 C -0.19 -4.70 6.21 -11.54 -0.07 -4.77 16 8 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 9 C 0.48 17.29 5.23 71.24 0.37 17.66 16 10 O -0.54 -21.86 13.43 21.98 0.30 -21.56 16 11 O -0.35 -14.65 8.88 -51.41 -0.46 -15.11 16 12 C 0.10 4.68 4.26 71.98 0.31 4.98 16 13 C 0.06 3.06 0.58 -52.92 -0.03 3.03 16 14 C -0.12 -5.78 8.11 71.98 0.58 -5.19 16 15 C -0.12 -5.73 8.11 71.98 0.58 -5.15 16 16 C -0.54 -29.43 8.01 25.60 0.21 -29.22 16 17 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 18 C 0.03 1.57 5.15 84.66 0.44 2.01 16 19 N -0.90 -49.44 9.35 21.45 0.20 -49.24 16 20 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 24 H 0.07 1.59 8.11 -2.39 -0.02 1.57 16 25 H 0.06 1.49 8.11 -2.39 -0.02 1.47 16 26 H 0.02 0.74 5.10 -2.39 -0.01 0.73 16 27 H 0.06 1.69 6.67 -2.39 -0.02 1.67 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.14 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.09 2.03 7.76 -2.38 -0.02 2.01 16 33 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.04 2.12 8.13 -2.39 -0.02 2.10 16 35 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 36 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 37 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 40 H 0.03 1.41 7.68 -2.39 -0.02 1.39 16 41 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -61.76 323.89 6.94 -54.83 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.98 Total: 13.33 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.89 Total: -27.35 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.20 Total: -49.24 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.16 Total: -36.67 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.76 6.94 -54.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695162.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.780 kcal (2) G-P(sol) polarization free energy of solvation -61.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds