Wall clock time and date at job start Mon Mar 30 2020 07:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47558 * 2 1 4 4 C 1.52999 * 109.47231 * 120.00529 * 2 1 3 5 5 H 1.08997 * 115.54927 * 274.32070 * 4 2 1 6 6 C 1.53080 * 117.51466 * 128.60539 * 4 2 1 7 7 C 1.52996 * 117.50072 * 59.99514 * 4 2 1 8 8 H 1.09002 * 117.49897 * 0.02562 * 7 4 2 9 9 C 1.50701 * 117.50008 * 215.00243 * 7 4 2 10 10 O 1.20819 * 120.00171 * 0.08655 * 9 7 4 11 11 O 1.34234 * 119.99735 * 180.08947 * 9 7 4 12 12 C 1.45206 * 116.99665 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47128 * 300.00027 * 13 12 11 15 15 C 1.53007 * 109.47220 * 59.99844 * 13 12 11 16 16 C 1.50699 * 109.47199 * 179.97438 * 13 12 11 17 17 H 1.07995 * 119.99899 * 1.36363 * 16 13 12 18 18 C 1.37881 * 119.99916 * 181.35812 * 16 13 12 19 19 N 1.31511 * 119.99757 * 193.96141 * 18 16 13 20 20 Si 1.86803 * 120.00105 * 13.97189 * 18 16 13 21 21 H 1.48491 * 109.47151 * 84.54885 * 20 18 16 22 22 H 1.48497 * 109.47116 * 204.55260 * 20 18 16 23 23 H 1.48505 * 109.46659 * 324.55053 * 20 18 16 24 24 H 1.09007 * 109.46608 * 299.99770 * 1 2 3 25 25 H 1.08996 * 109.46959 * 59.99349 * 1 2 3 26 26 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46608 * 240.00230 * 2 1 3 28 28 H 1.09003 * 109.46494 * 60.00501 * 3 2 1 29 29 H 1.09000 * 109.47490 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46864 * 300.00667 * 3 2 1 31 31 H 1.09001 * 117.51205 * 145.04456 * 6 4 2 32 32 H 1.09000 * 117.49230 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47273 * 59.99266 * 12 11 9 34 34 H 1.09000 * 109.46692 * 299.99809 * 12 11 9 35 35 H 1.09002 * 109.46961 * 189.31566 * 14 13 12 36 36 H 1.08997 * 109.47351 * 69.31544 * 14 13 12 37 37 H 1.08999 * 109.47070 * 309.31404 * 14 13 12 38 38 H 1.09003 * 109.46905 * 300.00278 * 15 13 12 39 39 H 1.09000 * 109.47019 * 59.99569 * 15 13 12 40 40 H 1.08997 * 109.47410 * 180.02562 * 15 13 12 41 41 H 0.97004 * 119.99595 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 2.1269 -0.1062 2.1447 6 6 3.0744 -1.8323 1.0514 7 6 1.6357 -2.1853 1.4342 8 1 1.0067 -2.6347 0.6657 9 6 1.3879 -2.6663 2.8407 10 8 1.5092 -1.9040 3.7701 11 8 1.0325 -3.9419 3.0608 12 6 0.8095 -4.3353 4.4407 13 6 0.4148 -5.8125 4.4925 14 6 -0.8688 -6.0259 3.6876 15 6 1.5385 -6.6619 3.8952 16 6 0.1840 -6.2209 5.9246 17 1 0.2851 -5.4936 6.7165 18 6 -0.1564 -7.5231 6.2238 19 7 -0.6227 -7.8234 7.4162 20 14 0.0452 -8.8608 4.9356 21 1 1.4430 -9.3614 4.9565 22 1 -0.8857 -9.9788 5.2332 23 1 -0.2617 -8.3052 3.5930 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.8417 -1.9480 1.8170 32 1 3.3916 -2.0487 0.0313 33 1 0.0087 -3.7303 4.8661 34 1 1.7238 -4.1828 5.0142 35 1 -1.2408 -7.0362 3.8580 36 1 -0.6592 -5.8901 2.6266 37 1 -1.6209 -5.3035 4.0047 38 1 1.7058 -6.3666 2.8593 39 1 2.4529 -6.5098 4.4685 40 1 1.2571 -7.7143 3.9316 41 1 -0.8618 -8.7396 7.6269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184695201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:51 Heat of formation + Delta-G solvation = -69.872948 kcal Electronic energy + Delta-G solvation = -19260.960016 eV Core-core repulsion = 16334.878470 eV Total energy + Delta-G solvation = -2926.081547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31783 -38.26731 -36.61212 -35.02316 -33.53114 -31.72850 -27.42877 -26.88275 -26.26814 -25.06897 -24.25344 -23.07432 -20.52237 -19.73067 -19.13056 -17.49006 -16.16946 -15.98908 -15.86897 -15.31075 -15.10563 -14.52516 -13.66529 -13.40626 -13.33436 -12.91978 -12.86185 -12.71146 -12.40467 -12.21542 -11.98537 -11.88182 -11.64404 -11.54422 -11.36475 -10.90736 -10.57530 -10.40027 -10.34518 -10.27745 -10.25284 -10.06562 -9.95834 -9.73159 -9.10175 -8.64804 -8.46767 -6.16172 -4.14404 2.38906 3.03539 3.27332 3.35948 3.40604 3.65455 4.36685 4.42742 4.53509 4.65188 4.82602 5.04319 5.14255 5.15797 5.21649 5.35425 5.44093 5.53974 5.64290 5.65985 5.79080 5.79710 5.86354 5.90896 5.92502 6.08063 6.14680 6.20191 6.28952 6.53857 6.58723 6.71224 6.78883 6.88307 7.06245 7.22617 7.44682 7.70632 8.19440 8.41912 8.86329 9.47394 10.96601 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.044959 B = 0.004258 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.646999 B = 6575.049431 C = 6652.055762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.115 4.115 5 H 0.119 0.881 6 C -0.146 4.146 7 C -0.162 4.162 8 H 0.132 0.868 9 C 0.484 3.516 10 O -0.517 6.517 11 O -0.350 6.350 12 C 0.093 3.907 13 C 0.043 3.957 14 C -0.139 4.139 15 C -0.146 4.146 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.078 3.922 19 N -0.890 5.890 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.246 1.246 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 12.793 -16.713 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.133 4.133 5 H 0.137 0.863 6 C -0.183 4.183 7 C -0.181 4.181 8 H 0.150 0.850 9 C 0.328 3.672 10 O -0.406 6.406 11 O -0.265 6.265 12 C 0.020 3.980 13 C 0.042 3.958 14 C -0.197 4.197 15 C -0.202 4.202 16 C -0.557 4.557 17 H 0.094 0.906 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.212 1.212 22 H -0.233 1.233 23 H -0.172 1.172 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.766 12.843 -16.257 21.259 hybrid contribution 0.085 -0.932 -0.250 0.969 sum 4.850 11.911 -16.507 20.926 Atomic orbital electron populations 1.21849 0.94690 1.02221 1.01873 1.20748 0.96005 0.96110 0.95606 1.21803 1.01132 0.95318 1.01916 1.22599 1.01002 0.89153 1.00552 0.86324 1.23157 0.90461 1.01427 1.03256 1.21793 1.01919 1.00525 0.93911 0.84993 1.22448 0.73327 0.81041 0.90416 1.90627 1.48408 1.56307 1.45298 1.86471 1.77860 1.27574 1.34643 1.23416 1.00723 0.97630 0.76190 1.18585 0.92194 0.88255 0.96766 1.22220 0.98552 1.01400 0.97489 1.22287 0.99665 0.99244 0.99042 1.20671 1.48715 0.96518 0.89764 0.90642 1.24915 0.93606 0.98576 0.95369 1.69946 1.41510 1.19670 1.21555 0.87281 0.77134 0.80700 0.83144 1.21229 1.23307 1.17188 0.92343 0.92603 0.92390 0.90882 0.92410 0.92479 0.92552 0.88074 0.87434 0.91727 0.91860 0.92706 0.94932 0.93820 0.94070 0.93217 0.94187 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.03 37.16 0.34 -0.93 16 2 C -0.07 -0.55 3.07 -90.62 -0.28 -0.82 16 3 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 4 C -0.11 -1.20 4.66 -90.58 -0.42 -1.63 16 5 H 0.12 1.43 7.64 -51.93 -0.40 1.03 16 6 C -0.15 -1.46 9.88 -26.69 -0.26 -1.73 16 7 C -0.16 -2.01 5.50 -91.77 -0.50 -2.52 16 8 H 0.13 1.44 7.61 -51.93 -0.40 1.04 16 9 C 0.48 8.33 7.74 36.01 0.28 8.61 16 10 O -0.52 -10.20 16.01 -18.74 -0.30 -10.50 16 11 O -0.35 -6.67 9.06 -39.27 -0.36 -7.03 16 12 C 0.09 2.00 4.25 37.15 0.16 2.16 16 13 C 0.04 1.00 0.58 -155.66 -0.09 0.91 16 14 C -0.14 -3.08 7.58 37.16 0.28 -2.80 16 15 C -0.15 -3.20 7.55 37.16 0.28 -2.92 16 16 C -0.52 -14.38 8.62 -34.44 -0.30 -14.68 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.08 2.22 5.32 -17.82 -0.09 2.13 16 19 N -0.89 -26.93 13.96 55.43 0.77 -26.16 16 20 Si 0.89 21.64 22.79 -169.99 -3.87 17.77 16 21 H -0.28 -6.90 7.10 56.52 0.40 -6.50 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.25 -5.58 4.65 56.52 0.26 -5.31 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 27 H 0.07 0.53 7.90 -51.93 -0.41 0.12 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.06 1.42 8.13 -51.93 -0.42 1.00 16 34 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 35 H 0.05 1.25 4.30 -51.93 -0.22 1.03 16 36 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 37 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.04 0.81 7.68 -51.93 -0.40 0.41 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -30.66 321.98 -6.25 -36.90 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.07 Total: -0.92 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -0.28 Total: -14.92 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.16 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.66 Total: -17.53 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -3.87 Total: 17.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.66 -6.25 -36.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.968 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds