Wall clock time and date at job start Mon Mar 30 2020 07:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47558 * 2 1 4 4 C 1.52999 * 109.47231 * 120.00529 * 2 1 3 5 5 H 1.08997 * 115.54927 * 274.32070 * 4 2 1 6 6 C 1.53080 * 117.51466 * 128.60539 * 4 2 1 7 7 C 1.52996 * 117.50072 * 59.99514 * 4 2 1 8 8 H 1.09002 * 117.49897 * 0.02562 * 7 4 2 9 9 C 1.50701 * 117.50008 * 215.00243 * 7 4 2 10 10 O 1.20819 * 120.00171 * 0.08655 * 9 7 4 11 11 O 1.34234 * 119.99735 * 180.08947 * 9 7 4 12 12 C 1.45206 * 116.99665 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.53003 * 109.47128 * 300.00027 * 13 12 11 15 15 C 1.53007 * 109.47220 * 59.99844 * 13 12 11 16 16 C 1.50699 * 109.47199 * 179.97438 * 13 12 11 17 17 H 1.07995 * 119.99899 * 1.36363 * 16 13 12 18 18 C 1.37881 * 119.99916 * 181.35812 * 16 13 12 19 19 N 1.31511 * 119.99757 * 193.96141 * 18 16 13 20 20 Si 1.86803 * 120.00105 * 13.97189 * 18 16 13 21 21 H 1.48491 * 109.47151 * 84.54885 * 20 18 16 22 22 H 1.48497 * 109.47116 * 204.55260 * 20 18 16 23 23 H 1.48505 * 109.46659 * 324.55053 * 20 18 16 24 24 H 1.09007 * 109.46608 * 299.99770 * 1 2 3 25 25 H 1.08996 * 109.46959 * 59.99349 * 1 2 3 26 26 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46608 * 240.00230 * 2 1 3 28 28 H 1.09003 * 109.46494 * 60.00501 * 3 2 1 29 29 H 1.09000 * 109.47490 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46864 * 300.00667 * 3 2 1 31 31 H 1.09001 * 117.51205 * 145.04456 * 6 4 2 32 32 H 1.09000 * 117.49230 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.47273 * 59.99266 * 12 11 9 34 34 H 1.09000 * 109.46692 * 299.99809 * 12 11 9 35 35 H 1.09002 * 109.46961 * 189.31566 * 14 13 12 36 36 H 1.08997 * 109.47351 * 69.31544 * 14 13 12 37 37 H 1.08999 * 109.47070 * 309.31404 * 14 13 12 38 38 H 1.09003 * 109.46905 * 300.00278 * 15 13 12 39 39 H 1.09000 * 109.47019 * 59.99569 * 15 13 12 40 40 H 1.08997 * 109.47410 * 180.02562 * 15 13 12 41 41 H 0.97004 * 119.99595 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 2.1269 -0.1062 2.1447 6 6 3.0744 -1.8323 1.0514 7 6 1.6357 -2.1853 1.4342 8 1 1.0067 -2.6347 0.6657 9 6 1.3879 -2.6663 2.8407 10 8 1.5092 -1.9040 3.7701 11 8 1.0325 -3.9419 3.0608 12 6 0.8095 -4.3353 4.4407 13 6 0.4148 -5.8125 4.4925 14 6 -0.8688 -6.0259 3.6876 15 6 1.5385 -6.6619 3.8952 16 6 0.1840 -6.2209 5.9246 17 1 0.2851 -5.4936 6.7165 18 6 -0.1564 -7.5231 6.2238 19 7 -0.6227 -7.8234 7.4162 20 14 0.0452 -8.8608 4.9356 21 1 1.4430 -9.3614 4.9565 22 1 -0.8857 -9.9788 5.2332 23 1 -0.2617 -8.3052 3.5930 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 3.8417 -1.9480 1.8170 32 1 3.3916 -2.0487 0.0313 33 1 0.0087 -3.7303 4.8661 34 1 1.7238 -4.1828 5.0142 35 1 -1.2408 -7.0362 3.8580 36 1 -0.6592 -5.8901 2.6266 37 1 -1.6209 -5.3035 4.0047 38 1 1.7058 -6.3666 2.8593 39 1 2.4529 -6.5098 4.4685 40 1 1.2571 -7.7143 3.9316 41 1 -0.8618 -8.7396 7.6269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184695201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:51 Heat of formation + Delta-G solvation = -87.176883 kcal Electronic energy + Delta-G solvation = -19261.710371 eV Core-core repulsion = 16334.878470 eV Total energy + Delta-G solvation = -2926.831902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68306 -39.38502 -38.14554 -36.70545 -34.28117 -33.85769 -28.54267 -28.03480 -27.96060 -27.09046 -25.61056 -23.83098 -21.68735 -20.98896 -20.60964 -18.85103 -18.01147 -17.56860 -17.36329 -17.13957 -15.97843 -15.45769 -15.13042 -14.95464 -14.76857 -14.31743 -14.02781 -13.98376 -13.75569 -13.62673 -13.34830 -13.27446 -12.99126 -12.45863 -12.29512 -12.17206 -12.06508 -12.02039 -11.89141 -11.57413 -11.54002 -11.48420 -11.23434 -11.10610 -10.99741 -10.64981 -10.43314 -8.35703 -6.38783 1.07804 1.35587 1.37067 1.49603 1.68294 2.31578 2.74326 3.00223 3.57486 3.64180 3.74395 4.00311 4.05243 4.09107 4.13890 4.36298 4.39157 4.44306 4.56371 4.65275 4.77393 4.80519 4.83719 4.86519 4.91867 4.93013 5.02947 5.07756 5.08277 5.13672 5.21476 5.28087 5.40940 5.45689 5.52087 5.54950 5.64308 5.70859 6.22671 6.63836 6.75278 7.26647 8.81071 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.044959 B = 0.004258 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.646999 B = 6575.049431 C = 6652.055762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.110 4.110 5 H 0.096 0.904 6 C -0.128 4.128 7 C -0.175 4.175 8 H 0.155 0.845 9 C 0.479 3.521 10 O -0.550 6.550 11 O -0.346 6.346 12 C 0.104 3.896 13 C 0.038 3.962 14 C -0.137 4.137 15 C -0.143 4.143 16 C -0.526 4.526 17 H 0.030 0.970 18 C 0.023 3.977 19 N -0.941 5.941 20 Si 0.943 3.057 21 H -0.278 1.278 22 H -0.309 1.309 23 H -0.210 1.210 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 12.758 -20.802 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.129 4.129 5 H 0.114 0.886 6 C -0.164 4.164 7 C -0.194 4.194 8 H 0.172 0.828 9 C 0.325 3.675 10 O -0.442 6.442 11 O -0.262 6.262 12 C 0.031 3.969 13 C 0.037 3.963 14 C -0.194 4.194 15 C -0.200 4.200 16 C -0.564 4.564 17 H 0.049 0.951 18 C -0.175 4.175 19 N -0.580 5.580 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.238 1.238 23 H -0.134 1.134 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.632 12.837 -20.373 24.730 hybrid contribution -0.168 -0.760 1.108 1.354 sum 5.465 12.077 -19.265 23.385 Atomic orbital electron populations 1.21873 0.95035 1.01999 1.01930 1.20780 0.95656 0.96508 0.94964 1.21806 1.01493 0.94746 1.02100 1.22662 1.01062 0.88263 1.00886 0.88579 1.23344 0.88751 0.99567 1.04767 1.21931 1.04468 1.02054 0.90935 0.82779 1.23494 0.71892 0.79875 0.92250 1.90617 1.49827 1.56782 1.46953 1.86457 1.78309 1.29021 1.32435 1.22967 0.99555 0.96622 0.77770 1.18530 0.93904 0.89519 0.94312 1.22152 0.97437 1.00833 0.98958 1.22227 0.98637 0.98473 1.00661 1.20930 1.48163 0.95848 0.91434 0.95120 1.25783 0.93110 1.01052 0.97558 1.70088 1.43407 1.20326 1.24169 0.86328 0.77220 0.77203 0.82081 1.20463 1.23789 1.13394 0.93892 0.91004 0.92744 0.88767 0.93490 0.91939 0.91157 0.88957 0.83959 0.93334 0.93058 0.93387 0.91924 0.94191 0.91036 0.93453 0.94482 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.03 71.98 0.65 -1.57 16 2 C -0.06 -0.82 3.07 -10.79 -0.03 -0.85 16 3 C -0.14 -1.73 9.18 71.98 0.66 -1.07 16 4 C -0.11 -2.09 4.66 -10.77 -0.05 -2.14 16 5 H 0.10 2.28 7.64 -2.39 -0.02 2.26 16 6 C -0.13 -2.14 9.88 30.62 0.30 -1.84 16 7 C -0.18 -3.90 5.50 -11.54 -0.06 -3.97 16 8 H 0.15 2.77 7.61 -2.39 -0.02 2.75 16 9 C 0.48 16.07 7.74 71.24 0.55 16.62 16 10 O -0.55 -22.08 16.01 21.98 0.35 -21.73 16 11 O -0.35 -12.71 9.06 -51.46 -0.47 -13.18 16 12 C 0.10 4.53 4.25 71.98 0.31 4.83 16 13 C 0.04 1.76 0.58 -52.93 -0.03 1.72 16 14 C -0.14 -5.74 7.58 71.98 0.55 -5.19 16 15 C -0.14 -5.92 7.55 71.98 0.54 -5.37 16 16 C -0.53 -29.97 8.62 25.60 0.22 -29.75 16 17 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 18 C 0.02 1.34 5.32 84.66 0.45 1.79 16 19 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 20 Si 0.94 43.79 22.79 68.60 1.56 45.35 16 21 H -0.28 -12.53 7.10 99.48 0.71 -11.82 16 22 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.21 -8.54 4.65 99.48 0.46 -8.08 16 24 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.83 7.29 -2.39 -0.02 0.81 16 27 H 0.09 0.93 7.90 -2.38 -0.02 0.91 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.14 1.45 8.05 -2.39 -0.02 1.43 16 33 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 34 H 0.05 2.30 8.13 -2.39 -0.02 2.29 16 35 H 0.05 2.06 4.30 -2.39 -0.01 2.05 16 36 H 0.06 2.25 7.94 -2.39 -0.02 2.23 16 37 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 38 H 0.07 2.51 7.68 -2.39 -0.02 2.50 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 1.55 2.25 -2.39 -0.01 1.55 16 41 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -68.51 321.98 6.54 -61.96 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.74 Total: 12.86 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 4.05 Total: -26.77 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.11 Total: -34.91 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.56 Total: 45.35 kcal Total: -68.51 6.54 -61.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.215 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds