Wall clock time and date at job start Mon Mar 30 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 C 1.52999 * 109.47189 * 120.00663 * 2 1 3 5 5 H 1.08996 * 115.54564 * 207.34767 * 4 2 1 6 6 C 1.53003 * 117.49798 * 353.04695 * 4 2 1 7 7 C 1.52997 * 117.50065 * 61.67227 * 4 2 1 8 8 H 1.08996 * 117.49928 * 145.00163 * 7 4 2 9 9 C 1.50693 * 117.49997 * 0.02562 * 7 4 2 10 10 O 1.20828 * 120.00137 * 25.60277 * 9 7 4 11 11 O 1.34233 * 120.00415 * 205.60899 * 9 7 4 12 12 C 1.45198 * 117.00242 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46842 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47624 * 59.99479 * 13 12 11 15 15 C 1.53008 * 109.46945 * 299.99524 * 13 12 11 16 16 C 1.50698 * 109.47012 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99814 * 357.25007 * 16 13 12 18 18 C 1.37880 * 119.99773 * 177.52154 * 16 13 12 19 19 N 1.31524 * 119.99524 * 193.51214 * 18 16 13 20 20 Si 1.86795 * 120.00368 * 13.51230 * 18 16 13 21 21 H 1.48497 * 109.47024 * 90.50210 * 20 18 16 22 22 H 1.48495 * 109.47091 * 210.50663 * 20 18 16 23 23 H 1.48500 * 109.46885 * 330.50737 * 20 18 16 24 24 H 1.09001 * 109.47245 * 305.17019 * 1 2 3 25 25 H 1.09000 * 109.47574 * 65.16810 * 1 2 3 26 26 H 1.08998 * 109.47423 * 185.17105 * 1 2 3 27 27 H 1.09004 * 109.46973 * 240.00087 * 2 1 3 28 28 H 1.08996 * 109.47361 * 184.76302 * 3 2 1 29 29 H 1.09000 * 109.47033 * 304.76418 * 3 2 1 30 30 H 1.09007 * 109.46920 * 64.76011 * 3 2 1 31 31 H 1.09002 * 117.49473 * 0.02562 * 6 4 2 32 32 H 1.08996 * 117.49733 * 214.98683 * 6 4 2 33 33 H 1.08995 * 109.47135 * 59.99716 * 12 11 9 34 34 H 1.09000 * 109.47089 * 299.99662 * 12 11 9 35 35 H 1.08996 * 109.47842 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.47326 * 300.00350 * 14 13 12 37 37 H 1.09000 * 109.46757 * 60.00084 * 14 13 12 38 38 H 1.08991 * 109.47133 * 310.46918 * 15 13 12 39 39 H 1.09004 * 109.46839 * 70.47246 * 15 13 12 40 40 H 1.09000 * 109.47019 * 190.46464 * 15 13 12 41 41 H 0.97002 * 119.99532 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.0202 -0.4062 1.6067 6 6 1.0053 -1.1368 2.2970 7 6 1.6684 -2.1963 1.4144 8 1 2.4041 -2.8515 1.8807 9 6 0.8285 -2.8275 0.3341 10 8 0.8518 -2.3803 -0.7881 11 8 0.0544 -3.8866 0.6185 12 6 -0.7272 -4.4435 -0.4712 13 6 -1.5402 -5.6342 0.0409 14 6 -2.4787 -5.1692 1.1561 15 6 -0.5909 -6.7033 0.5859 16 6 -2.3518 -6.2118 -1.0899 17 1 -2.3279 -5.7466 -2.0643 18 6 -3.1293 -7.3308 -0.8790 19 7 -3.6231 -7.9910 -1.9037 20 14 -3.4812 -7.9091 0.8620 21 1 -4.7274 -7.2686 1.3539 22 1 -3.6467 -9.3847 0.8694 23 1 -2.3492 -7.5334 1.7467 24 1 -0.3634 0.5919 0.8401 25 1 -0.3634 0.4316 -0.9326 26 1 -0.3634 -1.0234 0.0926 27 1 1.8933 -0.5138 -0.8900 28 1 3.1267 1.4436 -0.0853 29 1 1.6087 1.9803 -0.8442 30 1 1.7480 1.9311 0.9296 31 1 -0.0387 -0.8965 2.0961 32 1 1.3048 -1.0948 3.3441 33 1 -0.0585 -4.7744 -1.2658 34 1 -1.4037 -3.6820 -0.8592 35 1 -3.0582 -6.0173 1.5206 36 1 -1.8920 -4.7512 1.9741 37 1 -3.1550 -4.4076 0.7678 38 1 0.1926 -6.9005 -0.1456 39 1 -0.1411 -6.3506 1.5141 40 1 -1.1481 -7.6202 0.7777 41 1 -4.1704 -8.7780 -1.7553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184695220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:54 Heat of formation + Delta-G solvation = -55.780589 kcal Electronic energy + Delta-G solvation = -19812.171242 eV Core-core repulsion = 16886.700786 eV Total energy + Delta-G solvation = -2925.470456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62978 -38.24195 -36.44012 -35.00668 -33.19168 -31.71667 -27.23855 -26.83153 -26.25140 -25.04319 -24.12873 -23.63218 -20.31735 -19.24941 -19.06456 -17.40853 -16.34453 -15.94805 -15.82592 -15.29814 -14.99381 -14.62490 -14.03668 -13.27989 -13.07075 -12.89497 -12.78138 -12.48419 -12.29390 -12.03926 -11.92685 -11.77131 -11.69068 -11.37673 -10.98360 -10.86462 -10.56139 -10.35270 -10.31855 -10.22815 -10.14920 -10.04468 -9.70083 -9.63243 -9.09891 -8.61100 -8.45813 -6.15861 -4.14096 2.48284 3.05310 3.27192 3.36682 3.39763 3.63022 4.37260 4.44597 4.67182 4.77994 4.98490 5.14518 5.16663 5.22497 5.32683 5.53688 5.58434 5.68209 5.77682 5.80093 5.87585 5.89871 5.91677 5.96657 6.15477 6.16872 6.28033 6.38195 6.45405 6.55282 6.60450 6.71447 6.80502 6.89493 7.09043 7.23525 7.44666 7.71040 8.21558 8.42128 8.86559 9.47825 10.96856 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041647 B = 0.004969 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.156316 B = 5633.360940 C = 5844.475084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.114 4.114 5 H 0.114 0.886 6 C -0.157 4.157 7 C -0.163 4.163 8 H 0.135 0.865 9 C 0.484 3.516 10 O -0.504 6.504 11 O -0.351 6.351 12 C 0.094 3.906 13 C 0.043 3.957 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.518 4.518 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.891 5.891 20 Si 0.873 3.127 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.237 1.237 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.476 14.138 8.995 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.201 4.201 4 C -0.132 4.132 5 H 0.132 0.868 6 C -0.194 4.194 7 C -0.182 4.182 8 H 0.152 0.848 9 C 0.328 3.672 10 O -0.393 6.393 11 O -0.267 6.267 12 C 0.021 3.979 13 C 0.042 3.958 14 C -0.200 4.200 15 C -0.198 4.198 16 C -0.556 4.556 17 H 0.093 0.907 18 C -0.124 4.124 19 N -0.527 5.527 20 Si 0.705 3.295 21 H -0.213 1.213 22 H -0.230 1.230 23 H -0.162 1.162 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.330 14.077 8.561 19.447 hybrid contribution -0.408 -0.547 0.689 0.969 sum 9.923 13.531 9.250 19.160 Atomic orbital electron populations 1.22076 0.95249 1.02180 1.01095 1.20743 0.95916 0.95051 0.97062 1.21828 1.00598 0.96094 1.01558 1.22572 0.99830 0.92692 0.98141 0.86784 1.23273 0.99695 0.99839 0.96575 1.21783 1.02883 0.93024 1.00546 0.84757 1.22418 0.78101 0.78515 0.88203 1.90630 1.63704 1.61539 1.23455 1.86495 1.53522 1.42862 1.43801 1.23396 0.92309 0.95784 0.86424 1.18580 0.92177 0.90089 0.94990 1.22247 0.99408 0.99922 0.98400 1.22284 0.99139 0.99767 0.98565 1.20666 1.26804 1.12016 0.96075 0.90697 1.24911 0.95285 0.95310 0.96915 1.69956 1.34457 1.18000 1.30322 0.87521 0.79216 0.76305 0.86493 1.21292 1.22951 1.16210 0.93310 0.92747 0.92152 0.88795 0.92906 0.92668 0.92911 0.87452 0.87749 0.91740 0.91958 0.94120 0.94236 0.93384 0.93859 0.94864 0.92666 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 7.12 37.16 0.26 -1.62 16 2 C -0.07 -0.80 2.44 -90.62 -0.22 -1.03 16 3 C -0.14 -1.31 9.17 37.16 0.34 -0.97 16 4 C -0.11 -1.18 5.71 -90.62 -0.52 -1.70 16 5 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 6 C -0.16 -1.60 9.37 -26.73 -0.25 -1.85 16 7 C -0.16 -1.99 6.29 -91.77 -0.58 -2.57 16 8 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 9 C 0.48 8.00 5.96 36.00 0.21 8.22 16 10 O -0.50 -9.25 12.20 -18.75 -0.23 -9.48 16 11 O -0.35 -6.53 9.08 -39.27 -0.36 -6.89 16 12 C 0.09 1.97 4.24 37.16 0.16 2.13 16 13 C 0.04 0.98 0.58 -155.66 -0.09 0.89 16 14 C -0.14 -3.10 7.65 37.15 0.28 -2.81 16 15 C -0.14 -3.08 7.44 37.16 0.28 -2.81 16 16 C -0.52 -14.24 8.62 -34.44 -0.30 -14.54 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.08 2.22 5.32 -17.81 -0.09 2.13 16 19 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 20 Si 0.87 21.24 22.83 -169.99 -3.88 17.35 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 23 H -0.24 -5.30 4.40 56.52 0.25 -5.06 16 24 H 0.05 0.53 7.41 -51.93 -0.38 0.15 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.91 4.30 -51.93 -0.22 0.68 16 27 H 0.09 1.30 6.68 -51.93 -0.35 0.95 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.11 1.18 5.86 -51.93 -0.30 0.88 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 34 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 35 H 0.04 0.91 2.70 -51.93 -0.14 0.77 16 36 H 0.04 0.76 7.68 -51.93 -0.40 0.37 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 39 H 0.03 0.65 7.96 -51.93 -0.41 0.24 16 40 H 0.05 1.26 3.84 -51.93 -0.20 1.06 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -29.95 308.81 -6.31 -36.27 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.76 Total: 0.72 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.51 Total: -16.53 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.59 Total: -16.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -3.88 Total: 17.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.95 -6.31 -36.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.513 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds