Wall clock time and date at job start Mon Mar 30 2020 07:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47444 * 2 1 4 4 C 1.52999 * 109.47189 * 120.00663 * 2 1 3 5 5 H 1.08996 * 115.54564 * 207.34767 * 4 2 1 6 6 C 1.53003 * 117.49798 * 353.04695 * 4 2 1 7 7 C 1.52997 * 117.50065 * 61.67227 * 4 2 1 8 8 H 1.08996 * 117.49928 * 145.00163 * 7 4 2 9 9 C 1.50693 * 117.49997 * 0.02562 * 7 4 2 10 10 O 1.20828 * 120.00137 * 25.60277 * 9 7 4 11 11 O 1.34233 * 120.00415 * 205.60899 * 9 7 4 12 12 C 1.45198 * 117.00242 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46842 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47624 * 59.99479 * 13 12 11 15 15 C 1.53008 * 109.46945 * 299.99524 * 13 12 11 16 16 C 1.50698 * 109.47012 * 179.97438 * 13 12 11 17 17 H 1.08001 * 119.99814 * 357.25007 * 16 13 12 18 18 C 1.37880 * 119.99773 * 177.52154 * 16 13 12 19 19 N 1.31524 * 119.99524 * 193.51214 * 18 16 13 20 20 Si 1.86795 * 120.00368 * 13.51230 * 18 16 13 21 21 H 1.48497 * 109.47024 * 90.50210 * 20 18 16 22 22 H 1.48495 * 109.47091 * 210.50663 * 20 18 16 23 23 H 1.48500 * 109.46885 * 330.50737 * 20 18 16 24 24 H 1.09001 * 109.47245 * 305.17019 * 1 2 3 25 25 H 1.09000 * 109.47574 * 65.16810 * 1 2 3 26 26 H 1.08998 * 109.47423 * 185.17105 * 1 2 3 27 27 H 1.09004 * 109.46973 * 240.00087 * 2 1 3 28 28 H 1.08996 * 109.47361 * 184.76302 * 3 2 1 29 29 H 1.09000 * 109.47033 * 304.76418 * 3 2 1 30 30 H 1.09007 * 109.46920 * 64.76011 * 3 2 1 31 31 H 1.09002 * 117.49473 * 0.02562 * 6 4 2 32 32 H 1.08996 * 117.49733 * 214.98683 * 6 4 2 33 33 H 1.08995 * 109.47135 * 59.99716 * 12 11 9 34 34 H 1.09000 * 109.47089 * 299.99662 * 12 11 9 35 35 H 1.08996 * 109.47842 * 179.97438 * 14 13 12 36 36 H 1.08999 * 109.47326 * 300.00350 * 14 13 12 37 37 H 1.09000 * 109.46757 * 60.00084 * 14 13 12 38 38 H 1.08991 * 109.47133 * 310.46918 * 15 13 12 39 39 H 1.09004 * 109.46839 * 70.47246 * 15 13 12 40 40 H 1.09000 * 109.47019 * 190.46464 * 15 13 12 41 41 H 0.97002 * 119.99532 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.0202 -0.4062 1.6067 6 6 1.0053 -1.1368 2.2970 7 6 1.6684 -2.1963 1.4144 8 1 2.4041 -2.8515 1.8807 9 6 0.8285 -2.8275 0.3341 10 8 0.8518 -2.3803 -0.7881 11 8 0.0544 -3.8866 0.6185 12 6 -0.7272 -4.4435 -0.4712 13 6 -1.5402 -5.6342 0.0409 14 6 -2.4787 -5.1692 1.1561 15 6 -0.5909 -6.7033 0.5859 16 6 -2.3518 -6.2118 -1.0899 17 1 -2.3279 -5.7466 -2.0643 18 6 -3.1293 -7.3308 -0.8790 19 7 -3.6231 -7.9910 -1.9037 20 14 -3.4812 -7.9091 0.8620 21 1 -4.7274 -7.2686 1.3539 22 1 -3.6467 -9.3847 0.8694 23 1 -2.3492 -7.5334 1.7467 24 1 -0.3634 0.5919 0.8401 25 1 -0.3634 0.4316 -0.9326 26 1 -0.3634 -1.0234 0.0926 27 1 1.8933 -0.5138 -0.8900 28 1 3.1267 1.4436 -0.0853 29 1 1.6087 1.9803 -0.8442 30 1 1.7480 1.9311 0.9296 31 1 -0.0387 -0.8965 2.0961 32 1 1.3048 -1.0948 3.3441 33 1 -0.0585 -4.7744 -1.2658 34 1 -1.4037 -3.6820 -0.8592 35 1 -3.0582 -6.0173 1.5206 36 1 -1.8920 -4.7512 1.9741 37 1 -3.1550 -4.4076 0.7678 38 1 0.1926 -6.9005 -0.1456 39 1 -0.1411 -6.3506 1.5141 40 1 -1.1481 -7.6202 0.7777 41 1 -4.1704 -8.7780 -1.7553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184695220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:54 Heat of formation + Delta-G solvation = -72.895623 kcal Electronic energy + Delta-G solvation = -19812.913405 eV Core-core repulsion = 16886.700786 eV Total energy + Delta-G solvation = -2926.212620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.88051 -39.47699 -37.96092 -36.61351 -34.10755 -33.80532 -28.41391 -28.13009 -27.99546 -27.07467 -25.46021 -24.42412 -21.56465 -20.95112 -20.12680 -18.70131 -18.02020 -17.63154 -17.30086 -16.95692 -16.03128 -15.73401 -15.31310 -14.90491 -14.78090 -14.48115 -14.11672 -13.76830 -13.74395 -13.56535 -13.33176 -13.15123 -12.64037 -12.47190 -12.34736 -12.16290 -12.04302 -11.93213 -11.83632 -11.75261 -11.41769 -11.35553 -11.13668 -11.06635 -10.71341 -10.64724 -10.36542 -8.34829 -6.37729 1.21826 1.35669 1.38524 1.49016 1.75382 2.32776 2.74295 3.01581 3.56934 3.75809 3.87441 4.01051 4.05092 4.12264 4.22512 4.29773 4.38783 4.45054 4.60354 4.74919 4.79151 4.79980 4.84411 4.87330 4.92293 4.93048 5.03121 5.06064 5.09914 5.15508 5.21385 5.32751 5.38597 5.43027 5.53347 5.63773 5.69351 5.73375 6.23724 6.65037 6.84550 7.27812 8.81909 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.041647 B = 0.004969 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.156316 B = 5633.360940 C = 5844.475084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.106 4.106 5 H 0.146 0.854 6 C -0.141 4.141 7 C -0.179 4.179 8 H 0.159 0.841 9 C 0.478 3.522 10 O -0.530 6.530 11 O -0.350 6.350 12 C 0.107 3.893 13 C 0.037 3.963 14 C -0.140 4.140 15 C -0.138 4.138 16 C -0.523 4.523 17 H 0.029 0.971 18 C 0.023 3.977 19 N -0.942 5.942 20 Si 0.931 3.069 21 H -0.281 1.281 22 H -0.306 1.306 23 H -0.198 1.198 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.129 15.481 12.747 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.194 4.194 4 C -0.124 4.124 5 H 0.163 0.837 6 C -0.178 4.178 7 C -0.198 4.198 8 H 0.177 0.823 9 C 0.323 3.677 10 O -0.420 6.420 11 O -0.266 6.266 12 C 0.034 3.966 13 C 0.036 3.964 14 C -0.196 4.196 15 C -0.195 4.195 16 C -0.561 4.561 17 H 0.048 0.952 18 C -0.175 4.175 19 N -0.581 5.581 20 Si 0.759 3.241 21 H -0.208 1.208 22 H -0.234 1.234 23 H -0.122 1.122 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.156 0.844 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.008 15.452 12.324 23.126 hybrid contribution -0.890 -0.856 -0.628 1.386 sum 11.118 14.596 11.695 21.759 Atomic orbital electron populations 1.22056 0.96465 1.00576 1.01352 1.20710 0.94905 0.96716 0.96793 1.21772 1.01314 0.94169 1.02194 1.22728 1.01398 0.90783 0.97509 0.83682 1.23414 0.99053 0.97316 0.98007 1.21964 1.03366 0.94140 1.00321 0.82307 1.23430 0.77547 0.77487 0.89223 1.90633 1.64398 1.61894 1.25062 1.86478 1.53830 1.44012 1.42316 1.22897 0.91975 0.95007 0.86765 1.18531 0.92589 0.91131 0.94114 1.22174 0.99217 0.99821 0.98425 1.22218 0.98661 0.98791 0.99811 1.20924 1.27407 1.11886 0.95895 0.95232 1.25781 0.94970 0.95463 1.01290 1.70099 1.35974 1.19002 1.33042 0.86585 0.80323 0.75376 0.81839 1.20819 1.23427 1.12164 0.91367 0.93852 0.94900 0.91796 0.91617 0.93084 0.91421 0.88619 0.84434 0.93423 0.93327 0.94401 0.91280 0.93687 0.94180 0.91884 0.93351 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 7.12 71.98 0.51 -3.15 16 2 C -0.07 -1.58 2.44 -10.80 -0.03 -1.61 16 3 C -0.14 -2.17 9.17 71.98 0.66 -1.51 16 4 C -0.11 -1.84 5.71 -10.79 -0.06 -1.90 16 5 H 0.15 1.67 8.10 -2.39 -0.02 1.65 16 6 C -0.14 -2.31 9.37 30.60 0.29 -2.02 16 7 C -0.18 -3.84 6.29 -11.54 -0.07 -3.91 16 8 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 9 C 0.48 15.40 5.96 71.23 0.42 15.82 16 10 O -0.53 -19.86 12.20 21.96 0.27 -19.59 16 11 O -0.35 -12.62 9.08 -51.44 -0.47 -13.08 16 12 C 0.11 4.59 4.24 71.98 0.31 4.89 16 13 C 0.04 1.70 0.58 -52.93 -0.03 1.67 16 14 C -0.14 -5.72 7.65 71.98 0.55 -5.17 16 15 C -0.14 -5.76 7.44 71.98 0.54 -5.22 16 16 C -0.52 -29.72 8.62 25.60 0.22 -29.50 16 17 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 18 C 0.02 1.32 5.32 84.65 0.45 1.77 16 19 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 20 Si 0.93 43.18 22.83 68.60 1.57 44.74 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.20 -7.99 4.40 99.48 0.44 -7.55 16 24 H 0.07 1.38 7.41 -2.39 -0.02 1.36 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.03 0.99 4.30 -2.39 -0.01 0.98 16 27 H 0.06 1.78 6.68 -2.38 -0.02 1.76 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.10 1.83 5.86 -2.39 -0.01 1.82 16 32 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 34 H 0.05 2.17 8.13 -2.39 -0.02 2.15 16 35 H 0.04 1.57 2.70 -2.39 -0.01 1.56 16 36 H 0.07 2.42 7.68 -2.39 -0.02 2.40 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.66 8.11 -2.39 -0.02 1.64 16 39 H 0.06 2.25 7.96 -2.39 -0.02 2.24 16 40 H 0.05 2.07 3.84 -2.39 -0.01 2.06 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -67.89 308.81 6.15 -61.73 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.73 Total: 14.64 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 3.76 Total: -29.83 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.20 Total: -32.67 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.57 Total: 44.74 kcal Total: -67.89 6.15 -61.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184695220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.165 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds