Wall clock time and date at job start Mon Mar 30 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47198 * 2 1 4 4 C 1.52995 * 115.55043 * 34.33089 * 3 2 1 5 5 C 1.52998 * 117.49735 * 248.61867 * 3 2 1 6 6 C 1.53000 * 60.00223 * 252.51152 * 5 3 2 7 7 H 1.09003 * 117.51576 * 107.47900 * 6 5 3 8 8 C 1.50692 * 117.49968 * 252.51200 * 6 5 3 9 9 O 1.20827 * 120.00135 * 68.62072 * 8 6 5 10 10 O 1.34230 * 120.00087 * 248.61823 * 8 6 5 11 11 C 1.45199 * 117.00162 * 179.97438 * 10 8 6 12 12 C 1.53006 * 109.47297 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47127 * 59.99947 * 12 11 10 14 14 C 1.52999 * 109.46623 * 300.00011 * 12 11 10 15 15 C 1.50697 * 109.47239 * 180.02562 * 12 11 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47204 * 119.99883 * 19 17 15 22 22 H 1.48496 * 109.47191 * 240.00215 * 19 17 15 23 23 H 1.09000 * 109.47536 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47305 * 300.00139 * 1 2 3 25 25 H 1.09009 * 109.46917 * 59.99929 * 1 2 3 26 26 H 1.09000 * 109.47305 * 239.99861 * 2 1 3 27 27 H 1.08996 * 109.47121 * 120.00204 * 2 1 3 28 28 H 1.09001 * 109.46857 * 205.66921 * 4 3 2 29 29 H 1.09002 * 109.47012 * 325.66266 * 4 3 2 30 30 H 1.08994 * 109.47407 * 85.66980 * 4 3 2 31 31 H 1.09003 * 117.50016 * 145.02064 * 5 3 2 32 32 H 1.09003 * 117.50278 * 0.02562 * 5 3 2 33 33 H 1.09000 * 109.46984 * 60.00461 * 11 10 8 34 34 H 1.09001 * 109.47399 * 300.00525 * 11 10 8 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 37 37 H 1.09004 * 109.47261 * 300.00303 * 13 12 11 38 38 H 1.09002 * 109.46716 * 179.97438 * 14 12 11 39 39 H 1.09000 * 109.47486 * 299.99829 * 14 12 11 40 40 H 1.09001 * 109.47362 * 60.00551 * 14 12 11 41 41 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1853 2.4446 0.7785 5 6 2.7419 1.9435 -1.2637 6 6 3.5550 1.6561 0.0000 7 1 4.1884 0.7689 0.0004 8 6 4.0911 2.8377 0.7663 9 8 3.3316 3.5739 1.3505 10 8 5.4123 3.0725 0.8000 11 6 5.8573 4.2289 1.5570 12 6 7.3818 4.3332 1.4797 13 6 7.8092 4.4849 0.0185 14 6 8.0098 3.0673 2.0661 15 6 7.8437 5.5330 2.2659 16 1 7.1221 6.1589 2.7698 17 6 9.1876 5.8318 2.3418 18 7 10.0663 5.0694 1.7285 19 14 9.7601 7.3195 3.3157 20 1 8.5837 8.0075 3.9057 21 1 10.6725 6.8792 4.4014 22 1 10.4789 8.2549 2.4138 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.3352 3.4441 0.3704 29 1 0.1339 2.1705 0.6910 30 1 1.4777 2.4332 1.8284 31 1 2.5948 2.9874 -1.5410 32 1 2.8401 1.2457 -2.0953 33 1 5.5524 4.1210 2.5979 34 1 5.4101 5.1308 1.1390 35 1 8.8954 4.5587 -0.0365 36 1 7.3617 5.3868 -0.3991 37 1 7.4752 3.6168 -0.5498 38 1 9.0959 3.1414 2.0107 39 1 7.7053 2.9592 3.1071 40 1 7.6759 2.1992 1.4978 41 1 11.0118 5.2794 1.7822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184763867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:06 Heat of formation + Delta-G solvation = -94.209859 kcal Electronic energy + Delta-G solvation = -19374.488766 eV Core-core repulsion = 16447.351891 eV Total energy + Delta-G solvation = -2927.136874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.73694 -39.50082 -37.89110 -36.55649 -33.36456 -33.07326 -29.19500 -27.91661 -27.60077 -27.25139 -25.37303 -24.63309 -21.66176 -20.73139 -19.75292 -18.72270 -17.80774 -17.36174 -17.12386 -16.58388 -16.02505 -15.45055 -14.98040 -14.88015 -14.73065 -14.13533 -13.87253 -13.56497 -13.35147 -13.31191 -13.07713 -13.02515 -12.84947 -12.73443 -12.58010 -12.35691 -12.15205 -12.04049 -11.73830 -11.67072 -11.40303 -11.29973 -11.17216 -11.08245 -10.75520 -10.61380 -10.42807 -8.06561 -6.25006 1.13598 1.40994 1.43577 1.53691 1.77999 2.43897 2.69502 3.16685 3.56452 3.66032 3.76359 4.05778 4.09143 4.24101 4.26248 4.46502 4.53551 4.59273 4.74054 4.81243 4.83686 4.87708 4.94986 4.99503 5.02030 5.11594 5.17737 5.19999 5.21718 5.31144 5.33841 5.41182 5.54926 5.60635 5.61092 5.70937 6.04694 6.15345 6.34886 6.77196 6.85918 7.43156 8.93421 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.049579 B = 0.004151 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.620129 B = 6743.850568 C = 6967.149162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.181 4.181 7 H 0.149 0.851 8 C 0.475 3.525 9 O -0.538 6.538 10 O -0.353 6.353 11 C 0.098 3.902 12 C 0.060 3.940 13 C -0.117 4.117 14 C -0.118 4.118 15 C -0.535 4.535 16 H 0.048 0.952 17 C 0.028 3.972 18 N -0.900 5.900 19 Si 0.954 3.046 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.031 0.969 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.075 -10.338 -5.914 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.167 4.167 5 C -0.165 4.165 6 C -0.200 4.200 7 H 0.166 0.834 8 C 0.321 3.679 9 O -0.429 6.429 10 O -0.269 6.269 11 C 0.025 3.975 12 C 0.060 3.940 13 C -0.175 4.175 14 C -0.175 4.175 15 C -0.573 4.573 16 H 0.066 0.934 17 C -0.172 4.172 18 N -0.538 5.538 19 Si 0.780 3.220 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.204 1.204 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.158 0.842 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.060 -10.105 -5.755 19.027 hybrid contribution 0.761 1.293 0.879 1.739 sum -14.299 -8.811 -4.876 17.489 Atomic orbital electron populations 1.21829 0.94297 1.02411 1.02243 1.21150 0.96987 0.90809 1.03239 1.21856 0.88622 0.98622 0.99343 1.21460 0.99399 0.96745 0.99096 1.23421 0.98755 1.03454 0.90892 1.22055 0.96881 0.96669 1.04366 0.83361 1.23454 0.80577 0.85607 0.78309 1.90609 1.58706 1.49373 1.44200 1.86504 1.25184 1.47977 1.67276 1.23212 0.97330 0.83946 0.93031 1.18274 0.86615 0.94692 0.94420 1.21607 1.02610 0.97265 0.96012 1.21612 1.02756 0.95958 0.97210 1.21230 0.92690 1.11021 1.32357 0.93363 1.25526 0.96557 0.98965 0.96183 1.69944 1.01840 1.38771 1.43217 0.85570 0.78138 0.79688 0.78605 1.19782 1.20431 1.20433 0.91324 0.92559 0.92047 0.89605 0.91339 0.93880 0.89882 0.93712 0.89126 0.84234 0.93540 0.93524 0.91734 0.96190 0.95005 0.91713 0.96202 0.95017 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.92 71.98 0.64 -1.21 16 2 C -0.08 -1.23 6.12 30.59 0.19 -1.05 16 3 C -0.08 -1.75 2.47 -52.18 -0.13 -1.88 16 4 C -0.11 -2.67 7.74 71.98 0.56 -2.12 16 5 C -0.13 -2.55 9.52 30.59 0.29 -2.25 16 6 C -0.18 -4.63 6.02 -11.54 -0.07 -4.70 16 7 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 8 C 0.48 17.26 7.72 71.23 0.55 17.81 16 9 O -0.54 -21.77 12.86 21.96 0.28 -21.49 16 10 O -0.35 -14.61 8.88 -51.41 -0.46 -15.07 16 11 C 0.10 4.55 4.26 71.98 0.31 4.85 16 12 C 0.06 3.04 0.58 -52.93 -0.03 3.01 16 13 C -0.12 -5.77 8.11 71.98 0.58 -5.19 16 14 C -0.12 -5.80 8.11 71.98 0.58 -5.21 16 15 C -0.53 -29.36 8.01 25.60 0.21 -29.15 16 16 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 17 C 0.03 1.50 5.15 84.66 0.44 1.93 16 18 N -0.90 -49.50 9.35 21.45 0.20 -49.30 16 19 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 23 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.75 6.45 -2.39 -0.02 0.74 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.09 0.96 7.90 -2.39 -0.02 0.94 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 1.21 7.02 -2.39 -0.02 1.19 16 29 H 0.08 1.56 5.58 -2.39 -0.01 1.54 16 30 H 0.04 1.28 7.26 -2.39 -0.02 1.26 16 31 H 0.09 2.00 8.05 -2.39 -0.02 1.98 16 32 H 0.14 1.86 8.05 -2.39 -0.02 1.85 16 33 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 34 H 0.05 2.19 8.13 -2.39 -0.02 2.18 16 35 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.03 1.42 7.68 -2.38 -0.02 1.40 16 38 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 39 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.03 1.41 7.68 -2.39 -0.02 1.40 16 41 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -61.26 323.66 7.15 -54.11 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.99 Total: 11.77 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.11 Total: -25.15 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.20 Total: -49.30 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.17 Total: -36.56 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.26 7.15 -54.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184763867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.098 kcal (2) G-P(sol) polarization free energy of solvation -61.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds