Wall clock time and date at job start Mon Mar 30 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 C 1.53000 * 115.54756 * 325.57852 * 3 2 1 5 5 C 1.52999 * 117.50236 * 111.25556 * 3 2 1 6 6 C 1.53005 * 117.49897 * 179.91531 * 3 2 1 7 7 H 1.08998 * 117.50248 * 144.99039 * 6 3 2 8 8 C 1.50710 * 117.49720 * 359.97438 * 6 3 2 9 9 O 1.20823 * 119.99718 * 0.02562 * 8 6 3 10 10 O 1.34227 * 119.99550 * 180.02562 * 8 6 3 11 11 C 1.45201 * 116.99569 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47241 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47064 * 300.00273 * 12 11 10 14 14 C 1.53001 * 109.47189 * 59.99926 * 12 11 10 15 15 C 1.50702 * 109.47568 * 180.02562 * 12 11 10 16 16 H 1.08001 * 119.99542 * 1.36181 * 15 12 11 17 17 C 1.37875 * 120.00234 * 181.35966 * 15 12 11 18 18 N 1.31516 * 119.99974 * 193.95895 * 17 15 12 19 19 Si 1.86794 * 119.99913 * 13.96315 * 17 15 12 20 20 H 1.48500 * 109.47440 * 84.55740 * 19 17 15 21 21 H 1.48501 * 109.47220 * 204.55440 * 19 17 15 22 22 H 1.48497 * 109.47681 * 324.55585 * 19 17 15 23 23 H 1.08999 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47271 * 299.99895 * 1 2 3 25 25 H 1.08997 * 109.46902 * 60.00311 * 1 2 3 26 26 H 1.08992 * 109.47495 * 239.99742 * 2 1 3 27 27 H 1.09008 * 109.47356 * 119.99505 * 2 1 3 28 28 H 1.08996 * 109.47021 * 34.42247 * 4 3 2 29 29 H 1.08997 * 109.47173 * 274.41531 * 4 3 2 30 30 H 1.09006 * 109.46406 * 154.42028 * 4 3 2 31 31 H 1.08997 * 117.50200 * 215.00259 * 5 3 2 32 32 H 1.09008 * 117.49805 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47325 * 299.99935 * 11 10 8 34 34 H 1.09002 * 109.47090 * 60.00085 * 11 10 8 35 35 H 1.08994 * 109.47550 * 69.31611 * 13 12 11 36 36 H 1.09000 * 109.47204 * 189.31697 * 13 12 11 37 37 H 1.09001 * 109.47047 * 309.31382 * 13 12 11 38 38 H 1.08997 * 109.46788 * 60.00198 * 14 12 11 39 39 H 1.08996 * 109.47176 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47187 * 299.99985 * 14 12 11 41 41 H 0.96994 * 119.99880 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1863 2.4442 -0.7803 5 6 2.7393 1.9447 1.2648 6 6 3.5550 1.6562 0.0020 7 1 3.9436 2.5104 -0.5525 8 6 4.4307 0.4297 0.0044 9 8 3.9302 -0.6699 0.0043 10 8 5.7668 0.5591 0.0068 11 6 6.5475 -0.6652 0.0084 12 6 8.0379 -0.3196 0.0117 13 6 8.3745 0.4983 -1.2368 14 6 8.3691 0.4983 1.2616 15 6 8.8483 -1.5901 0.0128 16 1 8.3503 -2.5482 -0.0109 17 6 10.2254 -1.5295 0.0439 18 7 10.9371 -2.6011 -0.2294 19 14 11.0801 0.0746 0.4745 20 1 11.1736 0.2051 1.9508 21 1 12.4451 0.0807 -0.1103 22 1 10.3013 1.2135 -0.0747 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.1348 2.1709 -0.6931 29 1 1.4793 2.4311 -1.8301 30 1 1.3368 3.4442 -0.3735 31 1 2.5912 2.9886 1.5411 32 1 2.8365 1.2472 2.0968 33 1 6.3081 -1.2476 0.8982 34 1 6.3112 -1.2480 -0.8818 35 1 7.9185 1.4852 -1.1585 36 1 9.4561 0.6035 -1.3216 37 1 7.9887 -0.0112 -2.1198 38 1 8.1294 -0.0844 2.1510 39 1 9.4308 0.7448 1.2637 40 1 7.7831 1.4173 1.2604 41 1 11.9058 -2.5586 -0.2070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184763887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:09 Heat of formation + Delta-G solvation = -60.802226 kcal Electronic energy + Delta-G solvation = -19515.258311 eV Core-core repulsion = 16589.570100 eV Total energy + Delta-G solvation = -2925.688211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47856 -38.36709 -36.48476 -34.99312 -32.35344 -31.71361 -28.56316 -26.70826 -26.25908 -25.02081 -24.04227 -23.89125 -20.47688 -19.16932 -18.81768 -17.38121 -16.04702 -15.89594 -15.74994 -15.26534 -14.88933 -14.30153 -14.16799 -13.44430 -13.27174 -13.11152 -12.83551 -12.43906 -12.24490 -12.14655 -11.96434 -11.94418 -11.80209 -11.60688 -11.27742 -11.05635 -10.44185 -10.33250 -10.25989 -10.21420 -10.06070 -10.00632 -9.72399 -9.61073 -9.09564 -8.64484 -8.46514 -6.15962 -4.14143 2.41000 3.05993 3.27450 3.36183 3.40718 3.63035 4.36901 4.43209 4.60748 4.70767 4.86041 5.15664 5.20776 5.24672 5.37774 5.45953 5.54017 5.57863 5.62604 5.79468 5.79963 5.84766 5.91610 5.96805 6.08750 6.15140 6.22186 6.28887 6.45849 6.54178 6.59109 6.71805 6.79174 6.89378 7.08918 7.22985 7.44944 7.71030 8.22529 8.42131 8.86472 9.47684 10.96828 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.004594 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.930364 B = 6093.930640 C = 6385.927415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.091 4.091 4 C -0.123 4.123 5 C -0.144 4.144 6 C -0.163 4.163 7 H 0.131 0.869 8 C 0.484 3.516 9 O -0.511 6.511 10 O -0.351 6.351 11 C 0.094 3.906 12 C 0.042 3.958 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.519 4.519 16 H 0.075 0.925 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.246 1.246 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.557 11.201 0.742 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.118 4.118 3 C -0.091 4.091 4 C -0.180 4.180 5 C -0.181 4.181 6 C -0.182 4.182 7 H 0.149 0.851 8 C 0.327 3.673 9 O -0.401 6.401 10 O -0.267 6.267 11 C 0.021 3.979 12 C 0.041 3.959 13 C -0.196 4.196 14 C -0.202 4.202 15 C -0.556 4.556 16 H 0.093 0.907 17 C -0.125 4.125 18 N -0.527 5.527 19 Si 0.717 3.283 20 H -0.212 1.212 21 H -0.233 1.233 22 H -0.172 1.172 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.473 10.748 0.716 20.526 hybrid contribution 0.846 0.588 0.304 1.074 sum -16.626 11.336 1.020 20.149 Atomic orbital electron populations 1.21924 0.96356 1.01426 1.01415 1.21146 0.94315 0.92295 1.04011 1.21700 0.90098 0.97867 0.99427 1.21522 0.99804 0.96988 0.99663 1.23272 1.00955 1.02821 0.91081 1.21926 0.92359 0.97864 1.06045 0.85102 1.22460 0.82453 0.89673 0.72701 1.90633 1.75159 1.28350 1.45921 1.86471 1.17710 1.39994 1.82534 1.23390 0.90776 0.82157 1.01536 1.18588 0.88843 0.96006 0.92418 1.22216 1.01107 0.97757 0.98553 1.22281 0.99428 0.98986 0.99509 1.20666 0.90893 0.91319 1.52720 0.90657 1.24910 0.97173 0.96386 0.93985 1.69944 1.06376 1.29481 1.46893 0.87284 0.77199 0.85390 0.78393 1.21242 1.23313 1.17210 0.92811 0.92941 0.92533 0.90648 0.90888 0.90776 0.91892 0.92267 0.87527 0.88117 0.91901 0.91757 0.94955 0.92731 0.93834 0.93237 0.94207 0.94085 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.92 37.16 0.33 -1.07 16 2 C -0.08 -0.96 4.36 -26.73 -0.12 -1.07 16 3 C -0.09 -0.97 2.46 -154.51 -0.38 -1.35 16 4 C -0.12 -0.99 9.49 37.16 0.35 -0.64 16 5 C -0.14 -1.49 9.53 -26.69 -0.25 -1.75 16 6 C -0.16 -2.05 6.02 -91.73 -0.55 -2.60 16 7 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 8 C 0.48 8.21 7.72 36.01 0.28 8.48 16 9 O -0.51 -9.62 12.86 -18.75 -0.24 -9.87 16 10 O -0.35 -6.67 9.06 -39.25 -0.36 -7.03 16 11 C 0.09 2.01 4.25 37.15 0.16 2.17 16 12 C 0.04 0.99 0.58 -155.66 -0.09 0.90 16 13 C -0.14 -3.08 7.58 37.16 0.28 -2.80 16 14 C -0.15 -3.20 7.55 37.16 0.28 -2.92 16 15 C -0.52 -14.34 8.62 -34.44 -0.30 -14.64 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.08 2.22 5.32 -17.82 -0.09 2.13 16 18 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 19 Si 0.88 21.66 22.79 -169.99 -3.87 17.79 16 20 H -0.28 -6.91 7.10 56.52 0.40 -6.51 16 21 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.25 -5.59 4.65 56.52 0.26 -5.33 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.45 6.45 -51.93 -0.33 0.12 16 26 H 0.07 1.04 7.27 -51.93 -0.38 0.66 16 27 H 0.07 0.99 7.01 -51.92 -0.36 0.63 16 28 H 0.07 0.53 5.59 -51.93 -0.29 0.24 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 31 H 0.11 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.10 1.11 8.05 -51.92 -0.42 0.69 16 33 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 34 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 35 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.05 1.25 4.30 -51.93 -0.22 1.03 16 37 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 40 H 0.04 0.81 7.68 -51.93 -0.40 0.41 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 313.82 15.07 4.73 4.73 Total: -1.00 -30.23 313.82 -5.91 -36.14 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.84 Total: -0.47 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -0.10 Total: -15.15 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.77 Total: -26.14 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.60 Total: -16.89 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -3.87 Total: 17.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.23 -5.91 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184763887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.663 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds