Wall clock time and date at job start Mon Mar 30 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46931 * 2 1 4 4 C 1.53000 * 115.54756 * 325.57852 * 3 2 1 5 5 C 1.52999 * 117.50236 * 111.25556 * 3 2 1 6 6 C 1.53005 * 117.49897 * 179.91531 * 3 2 1 7 7 H 1.08998 * 117.50248 * 144.99039 * 6 3 2 8 8 C 1.50710 * 117.49720 * 359.97438 * 6 3 2 9 9 O 1.20823 * 119.99718 * 0.02562 * 8 6 3 10 10 O 1.34227 * 119.99550 * 180.02562 * 8 6 3 11 11 C 1.45201 * 116.99569 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47241 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47064 * 300.00273 * 12 11 10 14 14 C 1.53001 * 109.47189 * 59.99926 * 12 11 10 15 15 C 1.50702 * 109.47568 * 180.02562 * 12 11 10 16 16 H 1.08001 * 119.99542 * 1.36181 * 15 12 11 17 17 C 1.37875 * 120.00234 * 181.35966 * 15 12 11 18 18 N 1.31516 * 119.99974 * 193.95895 * 17 15 12 19 19 Si 1.86794 * 119.99913 * 13.96315 * 17 15 12 20 20 H 1.48500 * 109.47440 * 84.55740 * 19 17 15 21 21 H 1.48501 * 109.47220 * 204.55440 * 19 17 15 22 22 H 1.48497 * 109.47681 * 324.55585 * 19 17 15 23 23 H 1.08999 * 109.46887 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47271 * 299.99895 * 1 2 3 25 25 H 1.08997 * 109.46902 * 60.00311 * 1 2 3 26 26 H 1.08992 * 109.47495 * 239.99742 * 2 1 3 27 27 H 1.09008 * 109.47356 * 119.99505 * 2 1 3 28 28 H 1.08996 * 109.47021 * 34.42247 * 4 3 2 29 29 H 1.08997 * 109.47173 * 274.41531 * 4 3 2 30 30 H 1.09006 * 109.46406 * 154.42028 * 4 3 2 31 31 H 1.08997 * 117.50200 * 215.00259 * 5 3 2 32 32 H 1.09008 * 117.49805 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.47325 * 299.99935 * 11 10 8 34 34 H 1.09002 * 109.47090 * 60.00085 * 11 10 8 35 35 H 1.08994 * 109.47550 * 69.31611 * 13 12 11 36 36 H 1.09000 * 109.47204 * 189.31697 * 13 12 11 37 37 H 1.09001 * 109.47047 * 309.31382 * 13 12 11 38 38 H 1.08997 * 109.46788 * 60.00198 * 14 12 11 39 39 H 1.08996 * 109.47176 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.47187 * 299.99985 * 14 12 11 41 41 H 0.96994 * 119.99880 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1863 2.4442 -0.7803 5 6 2.7393 1.9447 1.2648 6 6 3.5550 1.6562 0.0020 7 1 3.9436 2.5104 -0.5525 8 6 4.4307 0.4297 0.0044 9 8 3.9302 -0.6699 0.0043 10 8 5.7668 0.5591 0.0068 11 6 6.5475 -0.6652 0.0084 12 6 8.0379 -0.3196 0.0117 13 6 8.3745 0.4983 -1.2368 14 6 8.3691 0.4983 1.2616 15 6 8.8483 -1.5901 0.0128 16 1 8.3503 -2.5482 -0.0109 17 6 10.2254 -1.5295 0.0439 18 7 10.9371 -2.6011 -0.2294 19 14 11.0801 0.0746 0.4745 20 1 11.1736 0.2051 1.9508 21 1 12.4451 0.0807 -0.1103 22 1 10.3013 1.2135 -0.0747 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 0.1348 2.1709 -0.6931 29 1 1.4793 2.4311 -1.8301 30 1 1.3368 3.4442 -0.3735 31 1 2.5912 2.9886 1.5411 32 1 2.8365 1.2472 2.0968 33 1 6.3081 -1.2476 0.8982 34 1 6.3112 -1.2480 -0.8818 35 1 7.9185 1.4852 -1.1585 36 1 9.4561 0.6035 -1.3216 37 1 7.9887 -0.0112 -2.1198 38 1 8.1294 -0.0844 2.1510 39 1 9.4308 0.7448 1.2637 40 1 7.7831 1.4173 1.2604 41 1 11.9058 -2.5586 -0.2070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184763887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:09 Heat of formation + Delta-G solvation = -78.111366 kcal Electronic energy + Delta-G solvation = -19516.008892 eV Core-core repulsion = 16589.570100 eV Total energy + Delta-G solvation = -2926.438791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77671 -39.57353 -38.05126 -36.64113 -33.88225 -33.18341 -29.33810 -28.25655 -28.00641 -27.07565 -25.33510 -24.72059 -21.71894 -20.98184 -19.81917 -18.75425 -18.01088 -17.42070 -17.26506 -16.96976 -15.80151 -15.40387 -15.17099 -15.05471 -14.82061 -14.56246 -14.12666 -14.03889 -13.77642 -13.64689 -13.33046 -13.15635 -12.80987 -12.57380 -12.43740 -12.24098 -12.08970 -12.01141 -11.91611 -11.86888 -11.46409 -11.18937 -11.09897 -11.07573 -10.65206 -10.63777 -10.42282 -8.35704 -6.38624 1.12309 1.35126 1.36800 1.49135 1.71778 2.31370 2.69846 3.00236 3.53345 3.67232 3.77718 3.99545 4.03267 4.10351 4.12366 4.36616 4.45020 4.55079 4.58365 4.71066 4.77276 4.78400 4.81202 4.88582 4.91861 4.97030 5.03826 5.07279 5.13388 5.14287 5.23585 5.27253 5.39333 5.40910 5.54368 5.62226 5.65830 5.71207 6.22712 6.63935 6.80852 7.26796 8.81067 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.044723 B = 0.004594 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.930364 B = 6093.930640 C = 6385.927415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.178 4.178 7 H 0.153 0.847 8 C 0.476 3.524 9 O -0.538 6.538 10 O -0.350 6.350 11 C 0.107 3.893 12 C 0.037 3.963 13 C -0.136 4.136 14 C -0.143 4.143 15 C -0.525 4.525 16 H 0.030 0.970 17 C 0.024 3.976 18 N -0.941 5.941 19 Si 0.943 3.057 20 H -0.278 1.278 21 H -0.309 1.309 22 H -0.211 1.211 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.149 15.130 1.125 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.176 4.176 5 C -0.165 4.165 6 C -0.197 4.197 7 H 0.171 0.829 8 C 0.322 3.678 9 O -0.429 6.429 10 O -0.266 6.266 11 C 0.033 3.967 12 C 0.036 3.964 13 C -0.193 4.193 14 C -0.199 4.199 15 C -0.562 4.562 16 H 0.049 0.951 17 C -0.175 4.175 18 N -0.580 5.580 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.238 1.238 22 H -0.135 1.135 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.102 14.695 1.100 24.125 hybrid contribution 1.218 -0.778 0.174 1.455 sum -17.884 13.917 1.274 22.697 Atomic orbital electron populations 1.21880 0.93975 1.01800 1.02819 1.21071 0.96420 0.93058 1.01433 1.21856 0.89006 0.97652 1.00153 1.21562 0.99742 0.97033 0.99263 1.23437 0.98642 1.04474 0.89933 1.22098 0.92555 0.96342 1.08724 0.82917 1.23484 0.81798 0.91095 0.71464 1.90637 1.75213 1.29972 1.47035 1.86456 1.18966 1.38130 1.83037 1.22920 0.90526 0.83032 1.00216 1.18539 0.89190 0.94424 0.94223 1.22143 1.00763 0.98916 0.97489 1.22217 0.99611 0.99860 0.98237 1.20918 0.91547 0.91727 1.52046 0.95120 1.25768 0.97872 1.00103 0.93708 1.70085 1.06770 1.32250 1.48865 0.86335 0.75923 0.82131 0.78481 1.20498 1.23772 1.13486 0.93107 0.91580 0.90941 0.93403 0.93446 0.89592 0.91868 0.90236 0.84077 0.89252 0.93148 0.93370 0.92017 0.93426 0.94199 0.93488 0.94512 0.91130 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.92 71.98 0.64 -1.79 16 2 C -0.08 -1.92 4.36 30.59 0.13 -1.78 16 3 C -0.09 -1.63 2.46 -52.18 -0.13 -1.76 16 4 C -0.12 -1.46 9.49 71.98 0.68 -0.78 16 5 C -0.13 -2.24 9.53 30.62 0.29 -1.95 16 6 C -0.18 -4.05 6.02 -11.51 -0.07 -4.12 16 7 H 0.15 2.80 8.14 -2.39 -0.02 2.78 16 8 C 0.48 15.89 7.72 71.24 0.55 16.44 16 9 O -0.54 -20.83 12.86 21.97 0.28 -20.55 16 10 O -0.35 -12.88 9.06 -51.39 -0.47 -13.35 16 11 C 0.11 4.62 4.25 71.98 0.31 4.93 16 12 C 0.04 1.71 0.58 -52.93 -0.03 1.68 16 13 C -0.14 -5.74 7.58 71.98 0.55 -5.20 16 14 C -0.14 -5.93 7.55 71.98 0.54 -5.38 16 15 C -0.52 -29.91 8.62 25.60 0.22 -29.69 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 17 C 0.02 1.37 5.32 84.65 0.45 1.82 16 18 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 19 Si 0.94 43.94 22.79 68.60 1.56 45.50 16 20 H -0.28 -12.60 7.10 99.48 0.71 -11.90 16 21 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.21 -8.64 4.65 99.48 0.46 -8.17 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.97 6.45 -2.39 -0.02 0.95 16 26 H 0.05 1.36 7.27 -2.39 -0.02 1.34 16 27 H 0.05 1.32 7.01 -2.38 -0.02 1.30 16 28 H 0.09 0.87 5.59 -2.39 -0.01 0.85 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.69 7.90 -2.38 -0.02 0.67 16 31 H 0.14 1.53 8.05 -2.39 -0.02 1.51 16 32 H 0.09 1.79 8.05 -2.38 -0.02 1.77 16 33 H 0.05 2.26 8.13 -2.38 -0.02 2.25 16 34 H 0.05 2.20 8.13 -2.39 -0.02 2.18 16 35 H 0.06 2.24 7.94 -2.39 -0.02 2.22 16 36 H 0.05 2.06 4.30 -2.39 -0.01 2.05 16 37 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.04 1.55 2.25 -2.39 -0.01 1.54 16 40 H 0.07 2.51 7.68 -2.39 -0.02 2.49 16 41 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -68.14 313.82 6.57 -61.57 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.75 Total: 12.91 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.14 Total: -27.58 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.30 Total: -58.50 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.18 Total: -33.90 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.56 Total: 45.50 kcal Total: -68.14 6.57 -61.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184763887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.541 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds