Wall clock time and date at job start Mon Mar 30 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 C 1.52997 * 109.46980 * 239.99888 * 2 1 3 5 5 C 1.52997 * 109.47080 * 299.99758 * 4 2 1 6 6 C 1.52996 * 109.47342 * 300.00267 * 5 4 2 7 7 C 1.52997 * 109.47255 * 60.00235 * 6 5 4 8 8 C 1.52999 * 109.46559 * 119.99728 * 2 1 3 9 9 H 1.09009 * 109.46302 * 180.02562 * 8 2 1 10 10 C 1.50696 * 109.47581 * 299.99714 * 8 2 1 11 11 O 1.20833 * 119.99595 * 0.02562 * 10 8 2 12 12 O 1.34224 * 120.00302 * 180.02562 * 10 8 2 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 59.99744 * 19 17 15 21 21 H 1.48494 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47196 * 300.00241 * 19 17 15 23 23 H 1.09003 * 109.47689 * 300.00443 * 1 2 3 24 24 H 1.09008 * 109.46908 * 60.00354 * 1 2 3 25 25 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46747 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47013 * 299.99391 * 3 2 1 28 28 H 1.08994 * 109.47539 * 60.00127 * 3 2 1 29 29 H 1.08995 * 109.47152 * 60.00121 * 4 2 1 30 30 H 1.09002 * 109.46566 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47193 * 60.00531 * 5 4 2 32 32 H 1.09004 * 109.47195 * 180.02562 * 5 4 2 33 33 H 1.09008 * 109.47310 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47192 * 300.00265 * 6 5 4 35 35 H 1.08998 * 109.47657 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47379 * 59.99413 * 7 6 5 37 37 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 38 38 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 39 39 H 1.09000 * 109.47486 * 299.99948 * 14 13 12 40 40 H 1.09001 * 109.47362 * 60.00671 * 14 13 12 41 41 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2491 6 6 2.0400 -2.8849 0.0001 7 6 1.5299 -2.1637 1.2493 8 6 2.0399 -0.7212 1.2493 9 1 3.1300 -0.7208 1.2495 10 6 1.5376 -0.0108 2.4797 11 8 0.8426 0.9714 2.3688 12 8 1.8622 -0.4690 3.6988 13 6 1.3425 0.2649 4.8389 14 6 1.8141 -0.4020 6.1326 15 6 1.2742 0.3594 7.3159 16 1 0.6563 1.2314 7.1606 17 6 1.5692 -0.0572 8.5967 18 7 2.3213 -1.1194 8.7858 19 14 0.9007 0.8869 10.0633 20 1 -0.5837 0.8850 10.0183 21 1 1.3582 0.2396 11.3190 22 1 1.3954 2.2863 10.0184 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7216 -1.2489 31 1 0.4400 -2.1638 -1.2492 32 1 1.8937 -2.6778 -2.1389 33 1 1.6770 -3.9128 -0.0001 34 1 3.1300 -2.8849 0.0001 35 1 1.8929 -2.6778 2.1393 36 1 0.4399 -2.1637 1.2493 37 1 1.7056 1.2921 4.8059 38 1 0.2530 0.2634 4.8059 39 1 1.4506 -1.4291 6.1654 40 1 2.9036 -0.4008 6.1659 41 1 2.5286 -1.4128 9.6868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195015008.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:14 Heat of formation + Delta-G solvation = -123.997507 kcal Electronic energy + Delta-G solvation = -19600.081546 eV Core-core repulsion = 16671.652982 eV Total energy + Delta-G solvation = -2928.428564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85700 -38.62015 -36.04617 -33.39887 -33.07171 -31.48382 -30.10091 -27.36432 -26.81120 -25.03664 -23.54784 -21.52434 -20.98380 -20.43542 -18.45524 -17.28219 -16.25188 -15.94460 -15.85481 -14.98298 -14.72734 -14.53224 -14.38157 -13.70466 -13.41201 -13.08659 -13.01418 -12.42336 -12.32473 -11.94023 -11.86472 -11.55707 -11.46170 -11.22631 -11.09055 -11.00553 -10.93380 -10.78346 -10.64451 -10.59314 -10.22934 -10.12670 -9.81510 -9.58855 -9.40904 -9.24284 -8.43550 -6.09742 -4.14199 2.62238 3.23720 3.30291 3.34410 3.39023 4.38982 4.44891 4.55228 4.71000 4.96225 5.05696 5.18924 5.23744 5.26672 5.28122 5.33780 5.47816 5.56943 5.68302 5.76839 5.82478 5.91275 5.97346 5.98093 6.01228 6.05191 6.08079 6.11406 6.14332 6.23137 6.31957 6.48086 6.54990 6.65993 7.13961 7.57653 7.63532 7.87989 8.22163 8.33165 8.91170 9.50134 11.01719 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.004162 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.568879 B = 6725.476227 C = 7123.943889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.044 4.044 3 C -0.157 4.157 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.071 4.071 9 H 0.103 0.897 10 C 0.459 3.541 11 O -0.510 6.510 12 O -0.357 6.357 13 C 0.075 3.925 14 C 0.025 3.975 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -1.793 -19.990 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.045 4.045 3 C -0.214 4.214 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.152 4.152 8 C -0.090 4.090 9 H 0.121 0.879 10 C 0.303 3.697 11 O -0.400 6.400 12 O -0.273 6.273 13 C 0.002 3.998 14 C -0.012 4.012 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.347 -1.616 -19.822 19.891 hybrid contribution -0.333 0.601 0.918 1.147 sum -0.681 -1.014 -18.904 18.943 Atomic orbital electron populations 1.22224 0.94111 1.01808 1.03347 1.20322 0.96550 0.95091 0.92496 1.22138 1.00173 0.95500 1.03552 1.21606 1.00519 0.95339 0.96970 1.21624 1.01250 0.95576 0.97706 1.21521 1.00957 0.98887 0.94008 1.21573 1.01559 0.92854 0.99254 1.21102 1.02185 0.95877 0.89844 0.87923 1.23561 0.77720 0.82789 0.85662 1.90494 1.35970 1.26320 1.87231 1.86530 1.69312 1.56269 1.15159 1.23603 0.97994 0.95215 0.82941 1.19154 0.97780 0.96777 0.87502 1.20951 1.32428 1.12775 0.90381 0.92354 1.24976 0.94976 0.95094 0.99048 1.69962 1.36843 1.24003 1.22057 0.86537 0.79388 0.79994 0.81409 1.20073 1.21111 1.20070 0.89970 0.93108 0.92678 0.93365 0.92927 0.89822 0.91699 0.91905 0.91540 0.92119 0.91584 0.91708 0.90186 0.91124 0.92450 0.92450 0.95416 0.95426 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 7.48 37.16 0.28 -1.63 16 2 C -0.04 -0.51 0.51 -154.51 -0.08 -0.59 16 3 C -0.16 -1.89 8.18 37.16 0.30 -1.59 16 4 C -0.11 -0.98 4.73 -26.73 -0.13 -1.10 16 5 C -0.12 -1.05 5.65 -26.73 -0.15 -1.20 16 6 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.11 -1.34 4.86 -26.73 -0.13 -1.47 16 8 C -0.07 -0.92 1.94 -91.77 -0.18 -1.10 16 9 H 0.10 1.24 8.14 -51.92 -0.42 0.81 16 10 C 0.46 7.94 6.67 36.00 0.24 8.18 16 11 O -0.51 -9.61 11.10 -18.76 -0.21 -9.81 16 12 O -0.36 -7.18 10.12 -39.24 -0.40 -7.57 16 13 C 0.08 1.69 5.40 37.16 0.20 1.89 16 14 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 15 C -0.53 -14.94 9.11 -34.44 -0.31 -15.25 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.08 1.22 5.52 -51.93 -0.29 0.93 16 24 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 25 H 0.05 0.61 4.81 -51.93 -0.25 0.36 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.24 5.52 -51.93 -0.29 0.95 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 37 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -29.89 315.34 -7.45 -37.34 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.95 Total: -2.51 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.36 Total: -12.92 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.61 Total: -17.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.89 -7.45 -37.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195015008.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.657 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds