Wall clock time and date at job start Mon Mar 30 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46829 * 2 1 4 4 C 1.52997 * 109.46980 * 239.99888 * 2 1 3 5 5 C 1.52997 * 109.47080 * 299.99758 * 4 2 1 6 6 C 1.52996 * 109.47342 * 300.00267 * 5 4 2 7 7 C 1.52997 * 109.47255 * 60.00235 * 6 5 4 8 8 C 1.52999 * 109.46559 * 119.99728 * 2 1 3 9 9 H 1.09009 * 109.46302 * 180.02562 * 8 2 1 10 10 C 1.50696 * 109.47581 * 299.99714 * 8 2 1 11 11 O 1.20833 * 119.99595 * 0.02562 * 10 8 2 12 12 O 1.34224 * 120.00302 * 180.02562 * 10 8 2 13 13 C 1.45206 * 117.00077 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46777 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.46953 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99816 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00344 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99769 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46819 * 59.99744 * 19 17 15 21 21 H 1.48494 * 109.47285 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47196 * 300.00241 * 19 17 15 23 23 H 1.09003 * 109.47689 * 300.00443 * 1 2 3 24 24 H 1.09008 * 109.46908 * 60.00354 * 1 2 3 25 25 H 1.09003 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46747 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47013 * 299.99391 * 3 2 1 28 28 H 1.08994 * 109.47539 * 60.00127 * 3 2 1 29 29 H 1.08995 * 109.47152 * 60.00121 * 4 2 1 30 30 H 1.09002 * 109.46566 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47193 * 60.00531 * 5 4 2 32 32 H 1.09004 * 109.47195 * 180.02562 * 5 4 2 33 33 H 1.09008 * 109.47310 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47192 * 300.00265 * 6 5 4 35 35 H 1.08998 * 109.47657 * 179.97438 * 7 6 5 36 36 H 1.09005 * 109.47379 * 59.99413 * 7 6 5 37 37 H 1.09000 * 109.47070 * 300.00162 * 13 12 10 38 38 H 1.09001 * 109.46626 * 60.00180 * 13 12 10 39 39 H 1.09000 * 109.47486 * 299.99948 * 14 13 12 40 40 H 1.09001 * 109.47362 * 60.00671 * 14 13 12 41 41 H 0.97000 * 120.00540 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1637 -1.2491 6 6 2.0400 -2.8849 0.0001 7 6 1.5299 -2.1637 1.2493 8 6 2.0399 -0.7212 1.2493 9 1 3.1300 -0.7208 1.2495 10 6 1.5376 -0.0108 2.4797 11 8 0.8426 0.9714 2.3688 12 8 1.8622 -0.4690 3.6988 13 6 1.3425 0.2649 4.8389 14 6 1.8141 -0.4020 6.1326 15 6 1.2742 0.3594 7.3159 16 1 0.6563 1.2314 7.1606 17 6 1.5692 -0.0572 8.5967 18 7 2.3213 -1.1194 8.7858 19 14 0.9007 0.8869 10.0633 20 1 -0.5837 0.8850 10.0183 21 1 1.3582 0.2396 11.3190 22 1 1.3954 2.2863 10.0184 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7216 -1.2489 31 1 0.4400 -2.1638 -1.2492 32 1 1.8937 -2.6778 -2.1389 33 1 1.6770 -3.9128 -0.0001 34 1 3.1300 -2.8849 0.0001 35 1 1.8929 -2.6778 2.1393 36 1 0.4399 -2.1637 1.2493 37 1 1.7056 1.2921 4.8059 38 1 0.2530 0.2634 4.8059 39 1 1.4506 -1.4291 6.1654 40 1 2.9036 -0.4008 6.1659 41 1 2.5286 -1.4128 9.6868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195015008.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:14 Heat of formation + Delta-G solvation = -139.201419 kcal Electronic energy + Delta-G solvation = -19600.740837 eV Core-core repulsion = 16671.652982 eV Total energy + Delta-G solvation = -2929.087855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10470 -39.83146 -37.56660 -35.47672 -34.00208 -32.72915 -31.84660 -28.34641 -27.83912 -26.91067 -24.62945 -23.11794 -22.25582 -21.70512 -19.42311 -18.92572 -18.11540 -17.53463 -17.22751 -16.52314 -16.00050 -15.62508 -15.32427 -15.13600 -14.67175 -14.39538 -14.11667 -13.97746 -13.63264 -13.34245 -13.01342 -12.82508 -12.76674 -12.59714 -12.46575 -12.43277 -12.19172 -12.05097 -11.91489 -11.75957 -11.64205 -11.47671 -11.39762 -11.05929 -10.96018 -10.62267 -10.60473 -8.28138 -6.41886 1.21806 1.39840 1.43616 1.51543 1.81211 2.39498 3.05975 3.46979 3.65885 3.72277 4.08290 4.12901 4.19711 4.23624 4.29723 4.34861 4.39710 4.47584 4.53620 4.68514 4.75237 4.84271 4.85369 4.99454 5.05592 5.13278 5.14210 5.16533 5.22010 5.27306 5.32428 5.40071 5.44413 5.44741 5.46755 5.64245 5.68668 5.83674 6.05082 6.70619 6.82800 7.28013 8.84284 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.004162 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.568879 B = 6725.476227 C = 7123.943889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.043 4.043 3 C -0.156 4.156 4 C -0.101 4.101 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.114 4.114 8 C -0.066 4.066 9 H 0.116 0.884 10 C 0.452 3.548 11 O -0.525 6.525 12 O -0.368 6.368 13 C 0.091 3.909 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.064 0.936 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 -1.745 -21.491 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 C -0.213 4.213 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.085 4.085 9 H 0.134 0.866 10 C 0.297 3.703 11 O -0.415 6.415 12 O -0.284 6.284 13 C 0.018 3.982 14 C -0.005 4.005 15 C -0.591 4.591 16 H 0.082 0.918 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.797 3.203 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.409 -1.563 -21.350 21.411 hybrid contribution -0.312 0.579 1.323 1.478 sum -0.721 -0.984 -20.027 20.064 Atomic orbital electron populations 1.22178 0.94684 1.02052 1.02367 1.20382 0.96095 0.94924 0.92913 1.22102 1.00779 0.95755 1.02645 1.21587 1.01135 0.95505 0.95638 1.21629 1.01195 0.95104 0.97992 1.21517 1.01462 0.99144 0.92752 1.21590 1.01204 0.92003 1.00388 1.21313 1.02848 0.96370 0.87953 0.86612 1.24582 0.77291 0.82812 0.85576 1.90507 1.36634 1.27133 1.87232 1.86529 1.69717 1.56382 1.15809 1.23092 0.97661 0.94717 0.82711 1.18960 0.96164 0.95815 0.89575 1.21348 1.32943 1.13313 0.91470 0.91810 1.25962 0.94972 0.95967 1.02267 1.70086 1.37847 1.25508 1.23079 0.85377 0.78994 0.78682 0.77268 1.19065 1.20330 1.19059 0.93252 0.91680 0.91845 0.92392 0.91429 0.93058 0.90341 0.90888 0.91705 0.90049 0.90467 0.90852 0.91624 0.91743 0.92498 0.92537 0.97633 0.97657 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 7.48 71.98 0.54 -3.06 16 2 C -0.04 -0.92 0.51 -52.18 -0.03 -0.95 16 3 C -0.16 -3.57 8.18 71.98 0.59 -2.98 16 4 C -0.10 -1.51 4.73 30.59 0.14 -1.36 16 5 C -0.12 -1.64 5.65 30.59 0.17 -1.46 16 6 C -0.11 -1.73 5.92 30.59 0.18 -1.55 16 7 C -0.11 -2.55 4.86 30.59 0.15 -2.40 16 8 C -0.07 -1.66 1.94 -11.54 -0.02 -1.68 16 9 H 0.12 2.62 8.14 -2.38 -0.02 2.61 16 10 C 0.45 15.93 6.67 71.23 0.48 16.40 16 11 O -0.53 -20.29 11.10 21.94 0.24 -20.05 16 12 O -0.37 -15.26 10.12 -51.35 -0.52 -15.78 16 13 C 0.09 4.25 5.40 71.98 0.39 4.64 16 14 C 0.03 1.76 5.35 29.85 0.16 1.92 16 15 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.01 0.43 5.46 84.65 0.46 0.89 16 18 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 19 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H 0.05 1.48 5.52 -2.39 -0.01 1.46 16 24 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.06 1.33 4.81 -2.39 -0.01 1.32 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.52 5.52 -2.39 -0.01 1.51 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.65 8.11 -2.39 -0.02 1.63 16 36 H 0.06 1.50 6.43 -2.38 -0.02 1.49 16 37 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 38 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -65.31 315.34 6.47 -58.84 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.99 Total: 9.95 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.44 Total: -23.28 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.28 Total: -35.83 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.31 6.47 -58.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195015008.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.360 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds