Wall clock time and date at job start Mon Mar 30 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46792 * 237.09218 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 3 7 7 C 1.37845 * 126.53422 * 90.02224 * 6 5 4 8 8 C 1.40192 * 125.30706 * 359.97108 * 7 6 5 9 9 H 1.07995 * 120.00016 * 359.97438 * 8 7 6 10 10 C 1.40351 * 119.99858 * 179.97438 * 8 7 6 11 11 N 1.30583 * 120.00086 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47020 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46998 * 119.99841 * 12 10 8 15 15 H 1.48494 * 109.47231 * 240.00052 * 12 10 8 16 16 N 1.32472 * 109.39134 * 179.97438 * 7 6 5 17 17 C 1.33975 * 109.77740 * 0.02562 * 16 7 6 18 18 C 1.40532 * 133.19662 * 180.02562 * 17 16 7 19 19 C 1.36354 * 119.85329 * 179.97438 * 18 17 16 20 20 C 1.39043 * 120.75485 * 359.97438 * 19 18 17 21 21 C 1.37964 * 120.57570 * 0.03015 * 20 19 18 22 22 C 1.37959 * 126.53602 * 269.71568 * 6 5 4 23 23 H 4.44649 * 5.63361 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.46765 * 117.09551 * 3 2 1 25 25 H 1.08992 * 109.47494 * 357.09583 * 3 2 1 26 26 H 1.09002 * 109.47398 * 300.00415 * 4 3 2 27 27 H 1.09001 * 109.47194 * 60.00595 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 30 30 H 0.97008 * 119.99997 * 180.02562 * 11 10 8 31 31 H 1.08003 * 120.07209 * 359.96864 * 18 17 16 32 32 H 1.07996 * 119.62231 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.71175 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.12118 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7846 1.2111 5 6 4.6856 0.7859 1.2108 6 7 5.1736 1.5360 2.3707 7 6 5.4482 1.0258 3.6215 8 6 5.3037 -0.3167 3.9986 9 1 4.9510 -1.0438 3.2823 10 6 5.6174 -0.7156 5.3072 11 7 6.0443 0.1635 6.1732 12 14 5.4241 -2.5043 5.8099 13 1 4.9285 -3.2928 4.6532 14 1 6.7381 -3.0403 6.2471 15 1 4.4526 -2.6019 6.9287 16 7 5.8700 2.0018 4.4117 17 6 5.8888 3.1575 3.7342 18 6 6.2441 4.4715 4.0833 19 6 6.1582 5.4671 3.1556 20 6 5.7223 5.1987 1.8629 21 6 5.3672 3.9177 1.4938 22 6 5.4515 2.8864 2.4178 23 1 -1.0501 -0.0003 -0.0001 24 1 3.0091 0.4689 -0.9149 25 1 3.0099 -1.0254 0.0521 26 1 2.7917 1.8108 1.1590 27 1 2.7925 0.3163 2.1260 28 1 5.0498 -0.2402 1.2626 29 1 5.0484 1.2543 0.2959 30 1 6.2615 -0.1123 7.0775 31 1 6.5845 4.6923 5.0843 32 1 6.4327 6.4756 3.4279 33 1 5.6603 6.0002 1.1416 34 1 5.0293 3.7175 0.4877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227921582.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:53 Heat of formation + Delta-G solvation = 106.222647 kcal Electronic energy + Delta-G solvation = -17710.867610 eV Core-core repulsion = 14996.190717 eV Total energy + Delta-G solvation = -2714.676892 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39082 -36.37260 -35.51400 -33.59442 -32.89865 -30.77804 -29.14603 -28.57332 -25.98337 -25.76765 -22.02412 -21.33470 -20.63839 -19.44043 -18.06986 -16.94592 -16.23430 -15.87924 -15.00056 -14.81146 -14.38350 -14.04117 -13.76154 -13.07493 -12.97624 -12.71929 -12.42705 -12.31367 -11.62968 -11.51635 -11.42225 -11.15157 -10.70344 -10.61083 -10.52043 -10.31986 -10.28094 -10.08012 -10.01554 -9.36153 -8.99540 -7.90816 -7.24075 -6.86228 -6.68641 -4.63586 2.25270 2.69432 2.86675 2.89308 2.97756 3.01554 3.05771 3.77159 4.02850 4.13362 4.44557 4.94668 5.13934 5.37348 5.42417 5.53831 5.56549 5.68400 5.75059 5.85814 5.89264 6.03547 6.08685 6.26060 6.37729 6.52621 6.55161 6.72944 6.86797 6.99042 7.25605 7.46913 7.61516 7.66906 7.73185 7.91086 7.98353 8.31735 8.62829 9.01435 9.94682 10.20592 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.009952 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.069934 B = 2812.940751 C = 5113.353318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.011 4.011 4 C -0.131 4.131 5 C 0.134 3.866 6 N -0.539 5.539 7 C 0.420 3.580 8 C -0.440 4.440 9 H 0.088 0.912 10 C 0.077 3.923 11 N -0.716 5.716 12 Si 0.916 3.084 13 H -0.260 1.260 14 H -0.271 1.271 15 H -0.271 1.271 16 N -0.536 5.536 17 C 0.109 3.891 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.182 4.182 21 C -0.103 4.103 22 C -0.005 4.005 23 H 0.215 0.785 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.279 0.721 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -1.248 -8.207 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.176 4.176 3 C -0.048 4.048 4 C -0.170 4.170 5 C 0.010 3.990 6 N -0.235 5.235 7 C 0.184 3.816 8 C -0.477 4.477 9 H 0.106 0.894 10 C -0.150 4.150 11 N -0.338 5.338 12 Si 0.740 3.260 13 H -0.184 1.184 14 H -0.196 1.196 15 H -0.196 1.196 16 N -0.260 5.260 17 C -0.019 4.019 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.203 4.203 21 C -0.124 4.124 22 C -0.112 4.112 23 H 0.232 0.768 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.111 -1.395 -7.229 8.432 hybrid contribution -0.605 -0.651 -0.666 1.111 sum -4.716 -2.046 -7.894 9.421 Atomic orbital electron populations 1.24838 0.95929 1.01715 1.01493 1.23189 0.94619 0.99852 0.99909 1.18703 0.84692 1.01946 0.99475 1.21959 0.96103 1.00880 0.98018 1.21232 0.92879 0.97163 0.87775 1.45490 1.60619 1.05710 1.11635 1.20464 0.89637 0.94493 0.77043 1.18530 1.41883 0.90111 0.97221 0.89428 1.25863 0.93576 0.99690 0.95907 1.69985 1.25090 1.34679 1.04004 0.86132 0.78915 0.81440 0.79546 1.18368 1.19622 1.19641 1.71400 1.30776 0.95721 1.28080 1.19580 0.97895 0.94551 0.89834 1.19775 1.05909 0.90255 0.99127 1.20212 1.02887 0.97624 0.93701 1.20289 1.08360 0.95106 0.96566 1.19588 1.04626 0.91545 0.96675 1.18884 1.08870 0.85022 0.98415 0.76817 0.89643 0.89262 0.91529 0.90458 0.89797 0.91279 0.91009 0.87440 0.87849 0.87891 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.77 19.25 29.55 0.57 -2.20 16 2 C -0.18 -2.42 13.34 -37.12 -0.50 -2.91 16 3 C -0.01 -0.14 5.70 -29.52 -0.17 -0.31 16 4 C -0.13 -2.08 5.49 -26.73 -0.15 -2.23 16 5 C 0.13 2.33 5.90 -4.04 -0.02 2.31 16 6 N -0.54 -12.46 2.86 -113.48 -0.32 -12.79 16 7 C 0.42 11.22 7.41 -155.68 -1.15 10.07 16 8 C -0.44 -11.11 8.99 -38.05 -0.34 -11.45 16 9 H 0.09 1.99 7.10 -52.49 -0.37 1.62 16 10 C 0.08 1.89 5.50 -17.29 -0.10 1.80 16 11 N -0.72 -18.98 11.85 55.57 0.66 -18.32 16 12 Si 0.92 17.83 29.56 -169.99 -5.03 12.81 16 13 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 16 N -0.54 -15.44 9.33 -10.31 -0.10 -15.54 16 17 C 0.11 2.87 7.21 -84.89 -0.61 2.26 16 18 C -0.13 -2.99 10.07 -39.40 -0.40 -3.39 16 19 C -0.12 -2.46 9.96 -39.96 -0.40 -2.86 16 20 C -0.18 -3.51 10.04 -39.38 -0.40 -3.91 16 21 C -0.10 -2.11 10.04 -39.50 -0.40 -2.51 16 22 C 0.00 -0.11 6.88 -83.75 -0.58 -0.68 16 23 H 0.21 1.86 7.80 -54.08 -0.42 1.44 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.08 1.38 7.32 -51.93 -0.38 1.00 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 31 H 0.11 2.37 8.06 -52.48 -0.42 1.95 16 32 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -30.96 304.16 -8.95 -39.91 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.11 Total: 5.37 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -4.63 Total: -16.02 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.24 Total: -46.65 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.96 -8.95 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227921582.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.132 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds