Wall clock time and date at job start Mon Mar 30 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46792 * 237.09218 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 3 7 7 C 1.37845 * 126.53422 * 90.02224 * 6 5 4 8 8 C 1.40192 * 125.30706 * 359.97108 * 7 6 5 9 9 H 1.07995 * 120.00016 * 359.97438 * 8 7 6 10 10 C 1.40351 * 119.99858 * 179.97438 * 8 7 6 11 11 N 1.30583 * 120.00086 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99829 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47020 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46998 * 119.99841 * 12 10 8 15 15 H 1.48494 * 109.47231 * 240.00052 * 12 10 8 16 16 N 1.32472 * 109.39134 * 179.97438 * 7 6 5 17 17 C 1.33975 * 109.77740 * 0.02562 * 16 7 6 18 18 C 1.40532 * 133.19662 * 180.02562 * 17 16 7 19 19 C 1.36354 * 119.85329 * 179.97438 * 18 17 16 20 20 C 1.39043 * 120.75485 * 359.97438 * 19 18 17 21 21 C 1.37964 * 120.57570 * 0.03015 * 20 19 18 22 22 C 1.37959 * 126.53602 * 269.71568 * 6 5 4 23 23 H 4.44649 * 5.63361 * 180.02562 * 4 1 2 24 24 H 1.09001 * 109.46765 * 117.09551 * 3 2 1 25 25 H 1.08992 * 109.47494 * 357.09583 * 3 2 1 26 26 H 1.09002 * 109.47398 * 300.00415 * 4 3 2 27 27 H 1.09001 * 109.47194 * 60.00595 * 4 3 2 28 28 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 30 30 H 0.97008 * 119.99997 * 180.02562 * 11 10 8 31 31 H 1.08003 * 120.07209 * 359.96864 * 18 17 16 32 32 H 1.07996 * 119.62231 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.71175 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.12118 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7846 1.2111 5 6 4.6856 0.7859 1.2108 6 7 5.1736 1.5360 2.3707 7 6 5.4482 1.0258 3.6215 8 6 5.3037 -0.3167 3.9986 9 1 4.9510 -1.0438 3.2823 10 6 5.6174 -0.7156 5.3072 11 7 6.0443 0.1635 6.1732 12 14 5.4241 -2.5043 5.8099 13 1 4.9285 -3.2928 4.6532 14 1 6.7381 -3.0403 6.2471 15 1 4.4526 -2.6019 6.9287 16 7 5.8700 2.0018 4.4117 17 6 5.8888 3.1575 3.7342 18 6 6.2441 4.4715 4.0833 19 6 6.1582 5.4671 3.1556 20 6 5.7223 5.1987 1.8629 21 6 5.3672 3.9177 1.4938 22 6 5.4515 2.8864 2.4178 23 1 -1.0501 -0.0003 -0.0001 24 1 3.0091 0.4689 -0.9149 25 1 3.0099 -1.0254 0.0521 26 1 2.7917 1.8108 1.1590 27 1 2.7925 0.3163 2.1260 28 1 5.0498 -0.2402 1.2626 29 1 5.0484 1.2543 0.2959 30 1 6.2615 -0.1123 7.0775 31 1 6.5845 4.6923 5.0843 32 1 6.4327 6.4756 3.4279 33 1 5.6603 6.0002 1.1416 34 1 5.0293 3.7175 0.4877 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227921582.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:52 Heat of formation + Delta-G solvation = 89.982376 kcal Electronic energy + Delta-G solvation = -17711.571841 eV Core-core repulsion = 14996.190717 eV Total energy + Delta-G solvation = -2715.381123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15162 -37.94701 -36.85856 -35.33895 -34.34676 -32.17459 -30.80312 -30.29288 -27.67950 -27.21365 -23.39684 -23.08930 -22.34874 -21.13131 -19.13617 -18.67719 -17.89944 -17.45682 -16.54333 -16.19446 -15.89984 -15.65274 -15.03280 -14.64397 -14.49553 -14.42009 -13.78770 -13.64478 -13.24548 -13.03751 -12.95466 -12.72870 -12.33141 -12.17024 -12.01748 -11.92185 -11.81641 -11.26530 -11.06285 -11.00151 -10.74835 -9.79853 -9.02365 -8.61822 -8.49694 -6.54152 0.52033 1.01363 1.40660 1.44108 1.57736 1.83184 1.91508 2.15911 2.35629 2.44258 3.18331 3.50496 3.63902 3.84872 3.95868 4.21565 4.28327 4.32021 4.39490 4.48929 4.51283 4.69117 4.78416 4.90721 4.97439 5.07020 5.16551 5.18543 5.20574 5.29369 5.58715 5.69528 5.92928 5.98597 6.18116 6.24912 6.55173 6.70534 6.79721 7.22074 8.09122 8.43374 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.009952 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.069934 B = 2812.940751 C = 5113.353318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.218 4.218 3 C -0.002 4.002 4 C -0.115 4.115 5 C 0.127 3.873 6 N -0.539 5.539 7 C 0.391 3.609 8 C -0.466 4.466 9 H 0.104 0.896 10 C 0.030 3.970 11 N -0.771 5.771 12 Si 0.998 3.002 13 H -0.244 1.244 14 H -0.266 1.266 15 H -0.269 1.269 16 N -0.588 5.588 17 C 0.050 3.950 18 C -0.150 4.150 19 C -0.117 4.117 20 C -0.164 4.164 21 C -0.105 4.105 22 C -0.020 4.020 23 H 0.245 0.755 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.282 0.718 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -1.093 -10.829 12.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.218 4.218 3 C -0.039 4.039 4 C -0.154 4.154 5 C 0.005 3.995 6 N -0.234 5.234 7 C 0.152 3.848 8 C -0.504 4.504 9 H 0.122 0.878 10 C -0.193 4.193 11 N -0.394 5.394 12 Si 0.817 3.183 13 H -0.167 1.167 14 H -0.191 1.191 15 H -0.194 1.194 16 N -0.313 5.313 17 C -0.075 4.075 18 C -0.171 4.171 19 C -0.137 4.137 20 C -0.184 4.184 21 C -0.127 4.127 22 C -0.128 4.128 23 H 0.261 0.739 24 H 0.128 0.872 25 H 0.121 0.879 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.014 -1.208 -9.903 11.166 hybrid contribution -0.354 -0.453 0.042 0.577 sum -5.368 -1.660 -9.861 11.350 Atomic orbital electron populations 1.25716 0.96960 1.00312 0.99959 1.23664 0.95576 1.01234 1.01345 1.18655 0.84388 1.02353 0.98505 1.21746 0.94889 1.00289 0.98477 1.21588 0.93770 0.97298 0.86850 1.45680 1.59986 1.05770 1.11949 1.20803 0.90505 0.94917 0.78533 1.18977 1.42858 0.90220 0.98324 0.87797 1.26980 0.92306 1.04557 0.95416 1.70133 1.27160 1.37466 1.04649 0.84930 0.78897 0.75107 0.79376 1.16667 1.19117 1.19401 1.71247 1.32387 0.97272 1.30366 1.20135 1.00631 0.95182 0.91596 1.20053 1.06764 0.90304 1.00016 1.20661 1.01235 0.98457 0.93380 1.20901 1.04960 0.95696 0.96875 1.20055 1.03924 0.91171 0.97535 1.19300 1.09161 0.86052 0.98314 0.73868 0.87234 0.87853 0.92958 0.93505 0.89060 0.88503 0.90711 0.88079 0.83939 0.83239 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.84 19.25 74.32 1.43 -3.41 16 2 C -0.22 -5.65 13.34 31.13 0.42 -5.23 16 3 C 0.00 -0.05 5.70 28.79 0.16 0.11 16 4 C -0.12 -3.62 5.49 30.59 0.17 -3.45 16 5 C 0.13 4.34 5.90 86.38 0.51 4.85 16 6 N -0.54 -25.44 2.86 -512.94 -1.46 -26.91 16 7 C 0.39 21.95 7.41 133.69 0.99 22.94 16 8 C -0.47 -24.50 8.99 23.26 0.21 -24.29 16 9 H 0.10 4.84 7.10 -2.91 -0.02 4.82 16 10 C 0.03 1.51 5.50 85.39 0.47 1.98 16 11 N -0.77 -43.30 11.85 21.89 0.26 -43.04 16 12 Si 1.00 37.35 29.56 68.60 2.03 39.38 16 13 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 14 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 15 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 16 N -0.59 -35.96 9.33 -186.52 -1.74 -37.70 16 17 C 0.05 2.74 7.21 40.14 0.29 3.03 16 18 C -0.15 -7.09 10.07 22.39 0.23 -6.87 16 19 C -0.12 -4.39 9.96 22.02 0.22 -4.17 16 20 C -0.16 -5.67 10.04 22.40 0.22 -5.45 16 21 C -0.11 -4.08 10.04 22.32 0.22 -3.85 16 22 C -0.02 -0.98 6.88 39.06 0.27 -0.71 16 23 H 0.24 3.53 7.80 -4.41 -0.03 3.50 16 24 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 2.95 7.32 -2.39 -0.02 2.93 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.28 14.30 8.29 -92.70 -0.77 13.53 16 31 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -72.86 304.16 5.98 -66.88 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 1.09 Total: 25.90 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 5.81 Total: -24.51 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -2.95 Total: -107.65 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -72.86 5.98 -66.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227921582.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.859 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds