Wall clock time and date at job start Mon Mar 30 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 O 1.42903 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.42900 * 114.00279 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47615 * 180.02562 * 5 4 3 7 7 N 1.29950 * 126.28870 * 89.96984 * 6 5 4 8 8 O 1.21309 * 110.25025 * 180.02562 * 7 6 5 9 9 C 1.33640 * 109.80980 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.54833 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47310 * 270.02277 * 10 9 8 12 12 H 1.09004 * 109.47066 * 55.00137 * 11 10 9 13 13 C 1.53000 * 109.47166 * 295.00134 * 11 10 9 14 14 C 1.50702 * 109.47159 * 174.99934 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 N 1.31135 * 106.89850 * 0.22767 * 9 8 7 23 23 H 1.09001 * 109.47370 * 299.99950 * 1 2 3 24 24 H 1.09002 * 109.47406 * 60.00137 * 1 2 3 25 25 H 1.09004 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47728 * 240.00396 * 2 1 3 27 27 H 1.09002 * 109.47406 * 119.99863 * 2 1 3 28 28 H 1.08999 * 109.46987 * 60.00426 * 3 2 1 29 29 H 1.08994 * 109.47548 * 299.99753 * 3 2 1 30 30 H 1.08996 * 109.47348 * 59.99586 * 5 4 3 31 31 H 1.09009 * 109.47065 * 300.00051 * 5 4 3 32 32 H 1.09005 * 109.47508 * 150.02200 * 10 9 8 33 33 H 1.09000 * 109.47521 * 30.02507 * 10 9 8 34 34 H 1.08994 * 109.47175 * 59.99981 * 13 11 10 35 35 H 1.09001 * 109.47192 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47084 * 299.99410 * 13 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0501 2.7481 0.0012 6 6 5.5524 2.6292 0.0012 7 7 6.3191 2.5685 -1.0463 8 8 7.4813 2.4761 -0.7111 9 6 7.5689 2.4683 0.6224 10 6 8.8319 2.3670 1.4381 11 6 9.1449 0.8948 1.7129 12 1 9.1923 0.3512 0.7693 13 6 8.0458 0.2952 2.5923 14 6 10.4704 0.7869 2.4218 15 1 11.0331 1.6791 2.6536 16 6 10.9618 -0.4506 2.7801 17 7 10.2765 -1.5371 2.4981 18 14 12.6011 -0.5838 3.6656 19 1 12.5323 0.1600 4.9491 20 1 12.9027 -2.0125 3.9365 21 1 13.6719 -0.0051 2.8149 22 7 6.3454 2.5600 1.0853 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.7281 3.2888 0.8912 31 1 3.7288 3.2893 -0.8888 32 1 8.6969 2.8923 2.3837 33 1 9.6575 2.8173 0.8871 34 1 7.0872 0.3732 2.0796 35 1 8.2686 -0.7538 2.7877 36 1 7.9986 0.8388 3.5360 37 1 10.6224 -2.4077 2.7498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233234333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:19 Heat of formation + Delta-G solvation = 1.242347 kcal Electronic energy + Delta-G solvation = -18464.273992 eV Core-core repulsion = 15437.735892 eV Total energy + Delta-G solvation = -3026.538099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.13786 -38.34109 -35.85900 -35.12851 -33.81359 -32.56993 -30.71380 -28.19438 -26.60174 -25.77787 -25.15530 -23.10348 -21.85411 -21.39168 -19.58983 -17.78818 -17.05779 -16.64316 -16.39457 -16.18812 -15.28951 -14.69125 -14.51721 -14.03290 -13.64348 -13.07829 -12.74358 -12.52939 -12.38979 -12.17560 -11.96714 -11.62430 -11.38979 -11.20777 -11.09077 -11.00660 -10.85290 -10.67816 -10.57839 -10.14636 -10.01547 -9.87255 -9.81386 -9.15511 -8.92321 -8.38309 -6.03147 -4.12077 1.55819 2.45750 3.30844 3.32724 3.36266 3.38869 3.55408 4.15136 4.33816 4.41680 4.74103 4.81857 5.01813 5.10467 5.18291 5.26362 5.27320 5.28239 5.49251 5.61296 5.75950 5.91560 5.99171 6.01218 6.11311 6.22299 6.42196 6.56831 6.96022 6.97303 7.18007 7.28352 7.65842 7.87075 8.08851 8.32333 8.58039 8.90115 9.53296 11.02780 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.027793 B = 0.004157 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.197539 B = 6733.225675 C = 7468.951842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.063 3.937 4 O -0.380 6.380 5 C 0.164 3.836 6 C 0.159 3.841 7 N -0.383 5.383 8 O 0.074 5.926 9 C 0.218 3.782 10 C -0.027 4.027 11 C 0.050 3.950 12 H 0.032 0.968 13 C -0.138 4.138 14 C -0.519 4.519 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 N -0.481 5.481 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.011 0.989 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.410 7.058 -4.240 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.013 4.013 4 O -0.298 6.298 5 C 0.086 3.914 6 C -0.114 4.114 7 N -0.093 5.093 8 O 0.015 5.985 9 C -0.001 4.001 10 C -0.066 4.066 11 C 0.030 3.970 12 H 0.050 0.950 13 C -0.196 4.196 14 C -0.557 4.557 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 N -0.215 5.215 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.030 0.970 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.967 6.731 -4.720 17.076 hybrid contribution 0.832 -0.005 0.531 0.987 sum -14.134 6.726 -4.190 16.204 Atomic orbital electron populations 1.21688 0.94683 1.02282 1.01900 1.21471 0.95587 0.95481 1.03793 1.22585 0.80209 0.98284 1.00252 1.87982 1.19985 1.26348 1.95474 1.20234 0.83108 0.85890 1.02216 1.25239 0.98769 1.02787 0.84581 1.74542 0.90050 1.20546 1.24177 1.85280 1.21999 1.65432 1.25827 1.29592 0.97670 0.91693 0.81181 1.20866 0.85566 1.04004 0.96148 1.18730 0.95218 0.86088 0.96916 0.95027 1.21826 0.95315 1.04175 0.98247 1.20992 1.03380 0.92843 1.38497 0.92168 1.24956 0.97416 0.95777 0.95699 1.69897 1.37921 0.97918 1.46656 0.86595 0.83871 0.76991 0.80154 1.20191 1.21317 1.20172 1.71936 0.99912 1.21125 1.28552 0.92494 0.92611 0.91963 0.91028 0.90793 0.92978 0.93195 0.90133 0.90809 0.88238 0.89044 0.96950 0.89909 0.95187 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.25 6.30 -26.73 -0.17 -1.42 16 3 C 0.06 0.67 5.94 37.16 0.22 0.89 16 4 O -0.38 -5.77 10.33 -35.23 -0.36 -6.14 16 5 C 0.16 2.29 6.56 36.00 0.24 2.52 16 6 C 0.16 2.90 7.85 -156.37 -1.23 1.67 16 7 N -0.38 -7.31 12.16 30.90 0.38 -6.94 16 8 O 0.07 1.44 11.31 18.11 0.20 1.64 16 9 C 0.22 4.26 6.98 -13.06 -0.09 4.17 16 10 C -0.03 -0.52 5.25 -27.89 -0.15 -0.67 16 11 C 0.05 1.21 2.29 -91.77 -0.21 1.00 16 12 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.14 -3.41 8.78 37.16 0.33 -3.08 16 14 C -0.52 -13.55 8.56 -34.44 -0.29 -13.85 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.08 11.31 55.43 0.63 -24.45 16 18 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 22 N -0.48 -9.53 10.86 -9.86 -0.11 -9.63 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.01 0.28 6.84 -51.93 -0.35 -0.07 16 35 H 0.08 2.26 6.06 -51.93 -0.31 1.94 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -30.00 315.34 -6.32 -36.32 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.71 Total: -3.35 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.08 Total: -7.85 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.90 Total: -41.02 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.16 Total: -4.49 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.00 -6.32 -36.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233234333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.559 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds