Wall clock time and date at job start Mon Mar 30 2020 06:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 O 1.42903 * 109.47138 * 179.97438 * 3 2 1 5 5 C 1.42900 * 114.00279 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47615 * 180.02562 * 5 4 3 7 7 N 1.29950 * 126.28870 * 89.96984 * 6 5 4 8 8 O 1.21309 * 110.25025 * 180.02562 * 7 6 5 9 9 C 1.33640 * 109.80980 * 0.02562 * 8 7 6 10 10 C 1.50695 * 126.54833 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47310 * 270.02277 * 10 9 8 12 12 H 1.09004 * 109.47066 * 55.00137 * 11 10 9 13 13 C 1.53000 * 109.47166 * 295.00134 * 11 10 9 14 14 C 1.50702 * 109.47159 * 174.99934 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 11 10 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 N 1.31135 * 106.89850 * 0.22767 * 9 8 7 23 23 H 1.09001 * 109.47370 * 299.99950 * 1 2 3 24 24 H 1.09002 * 109.47406 * 60.00137 * 1 2 3 25 25 H 1.09004 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47728 * 240.00396 * 2 1 3 27 27 H 1.09002 * 109.47406 * 119.99863 * 2 1 3 28 28 H 1.08999 * 109.46987 * 60.00426 * 3 2 1 29 29 H 1.08994 * 109.47548 * 299.99753 * 3 2 1 30 30 H 1.08996 * 109.47348 * 59.99586 * 5 4 3 31 31 H 1.09009 * 109.47065 * 300.00051 * 5 4 3 32 32 H 1.09005 * 109.47508 * 150.02200 * 10 9 8 33 33 H 1.09000 * 109.47521 * 30.02507 * 10 9 8 34 34 H 1.08994 * 109.47175 * 59.99981 * 13 11 10 35 35 H 1.09001 * 109.47192 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47084 * 299.99410 * 13 11 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0501 2.7481 0.0012 6 6 5.5524 2.6292 0.0012 7 7 6.3191 2.5685 -1.0463 8 8 7.4813 2.4761 -0.7111 9 6 7.5689 2.4683 0.6224 10 6 8.8319 2.3670 1.4381 11 6 9.1449 0.8948 1.7129 12 1 9.1923 0.3512 0.7693 13 6 8.0458 0.2952 2.5923 14 6 10.4704 0.7869 2.4218 15 1 11.0331 1.6791 2.6536 16 6 10.9618 -0.4506 2.7801 17 7 10.2765 -1.5371 2.4981 18 14 12.6011 -0.5838 3.6656 19 1 12.5323 0.1600 4.9491 20 1 12.9027 -2.0125 3.9365 21 1 13.6719 -0.0051 2.8149 22 7 6.3454 2.5600 1.0853 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.7281 3.2888 0.8912 31 1 3.7288 3.2893 -0.8888 32 1 8.6969 2.8923 2.3837 33 1 9.6575 2.8173 0.8871 34 1 7.0872 0.3732 2.0796 35 1 8.2686 -0.7538 2.7877 36 1 7.9986 0.8388 3.5360 37 1 10.6224 -2.4077 2.7498 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233234333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:18 Heat of formation + Delta-G solvation = -17.909323 kcal Electronic energy + Delta-G solvation = -18465.104471 eV Core-core repulsion = 15437.735892 eV Total energy + Delta-G solvation = -3027.368578 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.61594 -39.35882 -37.55508 -36.64923 -34.78611 -34.20303 -32.48215 -29.31358 -28.32306 -27.21238 -26.61245 -24.58085 -23.16200 -22.45486 -21.32032 -19.27007 -18.53807 -18.24243 -17.63696 -17.23735 -16.57529 -16.46253 -15.94123 -15.18646 -14.91825 -14.62062 -14.25801 -13.96152 -13.46382 -13.23279 -13.18796 -13.02948 -12.83819 -12.79705 -12.59976 -12.51198 -12.19570 -12.06021 -11.93524 -11.83311 -11.72824 -11.71120 -10.94472 -10.78888 -10.76353 -10.43191 -8.07385 -6.22815 0.07299 1.03601 1.49511 1.50785 1.57986 1.84615 2.37647 2.48401 2.91584 3.11205 3.22332 3.86815 3.99089 4.06960 4.12509 4.30972 4.37657 4.46164 4.52623 4.53385 4.61774 4.64360 4.81193 4.84503 4.92339 5.04669 5.13222 5.16214 5.19602 5.32372 5.34121 5.61388 5.84365 6.04834 6.05268 6.28989 6.88175 7.09027 7.46682 8.98279 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.027793 B = 0.004157 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.197539 B = 6733.225675 C = 7468.951842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.058 3.942 4 O -0.415 6.415 5 C 0.161 3.839 6 C 0.159 3.841 7 N -0.394 5.394 8 O 0.065 5.935 9 C 0.213 3.787 10 C -0.015 4.015 11 C 0.048 3.952 12 H -0.002 1.002 13 C -0.124 4.124 14 C -0.529 4.529 15 H 0.074 0.926 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.267 1.267 22 N -0.496 5.496 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.011 0.989 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.935 8.566 -3.939 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.018 4.018 4 O -0.334 6.334 5 C 0.084 3.916 6 C -0.114 4.114 7 N -0.107 5.107 8 O 0.008 5.992 9 C -0.006 4.006 10 C -0.054 4.054 11 C 0.029 3.971 12 H 0.017 0.983 13 C -0.181 4.181 14 C -0.567 4.567 15 H 0.093 0.907 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.218 1.218 21 H -0.192 1.192 22 N -0.230 5.230 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.484 8.258 -4.426 18.098 hybrid contribution 0.910 -0.491 0.406 1.111 sum -14.574 7.767 -4.021 16.997 Atomic orbital electron populations 1.21654 0.92417 1.02957 1.02900 1.21517 0.97508 0.95138 1.02425 1.22846 0.78026 0.98862 1.02040 1.87930 1.22539 1.27139 1.95825 1.20529 0.80477 0.86011 1.04591 1.26038 1.00586 1.01074 0.83710 1.74533 0.90014 1.21416 1.24706 1.85261 1.22432 1.65724 1.25747 1.29550 0.97769 0.91920 0.81358 1.20671 0.86507 1.00871 0.97374 1.18613 0.94690 0.88860 0.94977 0.98334 1.21644 0.95492 1.02395 0.98611 1.21427 1.04068 0.93312 1.37928 0.90745 1.25815 1.00869 0.95589 0.96611 1.70057 1.39655 0.98332 1.48035 0.85553 0.79806 0.76675 0.79266 1.19257 1.21771 1.19196 1.71944 1.00210 1.21431 1.29429 0.91612 0.91445 0.91521 0.92186 0.92454 0.91332 0.91101 0.88008 0.88107 0.86740 0.86731 0.97014 0.92864 0.94612 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.13 -2.45 6.30 30.59 0.19 -2.26 16 3 C 0.06 1.12 5.94 71.98 0.43 1.55 16 4 O -0.42 -12.14 10.33 -148.98 -1.54 -13.67 16 5 C 0.16 4.20 6.56 71.23 0.47 4.67 16 6 C 0.16 5.62 7.85 138.46 1.09 6.71 16 7 N -0.39 -14.82 12.16 -60.28 -0.73 -15.56 16 8 O 0.06 2.50 11.31 74.85 0.85 3.35 16 9 C 0.21 8.21 6.98 88.38 0.62 8.83 16 10 C -0.02 -0.58 5.25 29.85 0.16 -0.43 16 11 C 0.05 2.35 2.29 -11.54 -0.03 2.32 16 12 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 13 C -0.12 -6.19 8.78 71.98 0.63 -5.55 16 14 C -0.53 -27.31 8.56 25.60 0.22 -27.09 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 16 C 0.01 0.53 5.30 84.66 0.45 0.98 16 17 N -0.92 -53.13 11.31 21.45 0.24 -52.89 16 18 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 N -0.50 -19.18 10.86 -303.16 -3.29 -22.47 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.11 4.00 8.14 -2.38 -0.02 3.98 16 33 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 34 H 0.01 0.54 6.84 -2.39 -0.02 0.52 16 35 H 0.05 2.98 6.06 -2.39 -0.01 2.96 16 36 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -64.38 315.34 3.53 -60.85 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.04 Total: 7.72 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 4.93 Total: -11.38 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -3.78 Total: -90.92 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.69 Total: -10.33 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -64.38 3.53 -60.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233234333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.941 kcal (2) G-P(sol) polarization free energy of solvation -64.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds