Wall clock time and date at job start Mon Mar 30 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 O 1.42903 * 109.46995 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99604 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47031 * 180.02562 * 5 4 3 7 7 N 1.29946 * 126.29198 * 270.02594 * 6 5 4 8 8 O 1.21298 * 110.25505 * 179.68388 * 7 6 5 9 9 C 1.33643 * 109.80846 * 0.46943 * 8 7 6 10 10 C 1.50699 * 126.54930 * 179.80105 * 9 8 7 11 11 H 1.09004 * 109.46963 * 179.68504 * 10 9 8 12 12 C 1.53004 * 109.47110 * 59.69075 * 10 9 8 13 13 C 1.52997 * 109.47337 * 299.68812 * 10 9 8 14 14 C 1.50701 * 109.47212 * 184.99952 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.31130 * 106.89670 * 359.53964 * 9 8 7 23 23 H 1.08996 * 109.47060 * 300.00070 * 1 2 3 24 24 H 1.09005 * 109.46978 * 59.99897 * 1 2 3 25 25 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47490 * 240.00219 * 2 1 3 27 27 H 1.09001 * 109.46813 * 119.99620 * 2 1 3 28 28 H 1.08998 * 109.46723 * 59.99749 * 3 2 1 29 29 H 1.08992 * 109.47113 * 299.99667 * 3 2 1 30 30 H 1.09001 * 109.47024 * 60.00033 * 5 4 3 31 31 H 1.08998 * 109.47484 * 300.00245 * 5 4 3 32 32 H 1.09004 * 109.46741 * 299.99564 * 12 10 9 33 33 H 1.09000 * 109.47403 * 59.99699 * 12 10 9 34 34 H 1.09001 * 109.46917 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47153 * 64.99954 * 13 10 9 36 36 H 1.09001 * 109.46832 * 305.00144 * 13 10 9 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0001 7 7 6.3192 2.5682 1.0476 8 8 7.4809 2.4700 0.7125 9 6 7.5690 2.4686 -0.6210 10 6 8.8321 2.3681 -1.4368 11 1 8.5821 2.3877 -2.4975 12 6 9.5498 1.0578 -1.1062 13 6 9.7478 3.5485 -1.1066 14 6 10.9543 3.5161 -2.0091 15 1 11.0575 2.7322 -2.7448 16 6 11.9260 4.4878 -1.8961 17 7 11.8001 5.4426 -1.0006 18 14 13.4211 4.4480 -3.0152 19 1 12.9825 4.5422 -4.4309 20 1 14.3099 5.5937 -2.6947 21 1 14.1598 3.1763 -2.8094 22 7 6.3460 2.5658 -1.0839 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.7282 3.2894 0.8896 31 1 3.7290 3.2884 -0.8903 32 1 9.7999 1.0382 -0.0454 33 1 8.8975 0.2169 -1.3414 34 1 10.4636 0.9854 -1.6960 35 1 10.0694 3.4793 -0.0674 36 1 9.2059 4.4821 -1.2579 37 1 12.4839 6.1260 -0.9209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233234460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:24 Heat of formation + Delta-G solvation = -3.713053 kcal Electronic energy + Delta-G solvation = -18215.708388 eV Core-core repulsion = 15188.955406 eV Total energy + Delta-G solvation = -3026.752982 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.17225 -38.41306 -35.91132 -35.31230 -33.88464 -32.58428 -31.01488 -28.17762 -27.13220 -25.84729 -24.63194 -23.14621 -22.23633 -21.76724 -19.62164 -17.77566 -16.98292 -16.68731 -16.60129 -16.28633 -15.33654 -14.73019 -14.56962 -14.24232 -13.71763 -13.30070 -12.64220 -12.60959 -12.48009 -12.17585 -12.03926 -11.91990 -11.43936 -11.36916 -11.17930 -11.07287 -10.98693 -10.90275 -10.63685 -10.55428 -10.17285 -9.94816 -9.88426 -9.27277 -9.21784 -8.44395 -6.08538 -4.12567 1.53428 2.40713 3.30148 3.31320 3.35520 3.36845 3.45759 4.09472 4.29611 4.41378 4.65187 4.73941 4.98416 5.02729 5.11710 5.19393 5.20920 5.27858 5.41102 5.55373 5.66855 5.75160 5.81948 5.84305 5.90411 5.96416 6.24548 6.31444 6.56511 6.67602 6.83579 6.89002 7.47683 7.56071 7.86716 8.22881 8.54636 8.91515 9.51819 11.02770 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.053964 B = 0.003387 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.737562 B = 8263.748769 C = 8387.130319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.062 3.938 4 O -0.382 6.382 5 C 0.163 3.837 6 C 0.159 3.841 7 N -0.380 5.380 8 O 0.083 5.917 9 C 0.221 3.779 10 C -0.001 4.001 11 H 0.107 0.893 12 C -0.136 4.136 13 C 0.029 3.971 14 C -0.522 4.522 15 H 0.062 0.938 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.275 1.275 22 N -0.491 5.491 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.022 0.978 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 -7.801 1.641 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.014 4.014 4 O -0.301 6.301 5 C 0.085 3.915 6 C -0.115 4.115 7 N -0.090 5.090 8 O 0.023 5.977 9 C 0.002 3.998 10 C -0.022 4.022 11 H 0.125 0.875 12 C -0.194 4.194 13 C -0.009 4.009 14 C -0.560 4.560 15 H 0.080 0.920 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.225 5.225 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.683 -7.757 2.220 19.437 hybrid contribution 0.793 0.418 -0.579 1.067 sum -16.891 -7.339 1.642 18.489 Atomic orbital electron populations 1.21692 0.94634 1.02276 1.02035 1.21464 0.95668 0.95490 1.03573 1.22594 0.80173 0.98220 1.00442 1.87932 1.20030 1.26573 1.95534 1.20246 0.83011 0.85703 1.02502 1.25187 0.98710 1.02995 0.84565 1.74566 0.90046 1.20185 1.24196 1.85287 1.21835 1.64933 1.25619 1.29637 0.97115 0.91652 0.81430 1.20379 0.84952 1.00429 0.96417 0.87547 1.21788 1.00888 0.93877 1.02810 1.19249 0.93013 0.90321 0.98346 1.21019 1.04573 1.11467 1.18920 0.91970 1.25003 0.98415 0.95293 0.95520 1.69955 1.34897 1.14039 1.34112 0.86596 0.82443 0.77611 0.81006 1.20138 1.21312 1.20076 1.71904 1.00003 1.21656 1.28942 0.92512 0.92454 0.91981 0.90966 0.91082 0.93075 0.92904 0.90597 0.90013 0.92278 0.94009 0.89600 0.95211 0.95966 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.24 16 3 C 0.06 0.60 5.94 37.16 0.22 0.82 16 4 O -0.38 -5.35 10.33 -35.23 -0.36 -5.71 16 5 C 0.16 2.25 6.56 36.00 0.24 2.48 16 6 C 0.16 2.88 7.85 -156.37 -1.23 1.66 16 7 N -0.38 -7.40 12.16 30.90 0.38 -7.02 16 8 O 0.08 1.67 11.31 18.10 0.20 1.87 16 9 C 0.22 4.40 7.02 -13.06 -0.09 4.31 16 10 C 0.00 -0.03 2.81 -91.77 -0.26 -0.28 16 11 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 12 C -0.14 -2.36 8.99 37.16 0.33 -2.03 16 13 C 0.03 0.70 4.43 -27.88 -0.12 0.57 16 14 C -0.52 -13.64 8.41 -34.44 -0.29 -13.93 16 15 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.85 13.29 55.43 0.74 -25.12 16 18 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 22 N -0.49 -9.69 11.55 -9.87 -0.11 -9.81 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.50 6.95 -51.93 -0.36 1.14 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -30.26 319.46 -6.25 -36.51 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -5.78 Total: -4.57 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.10 Total: -6.66 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 1.00 Total: -41.94 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.16 Total: -3.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.26 -6.25 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233234460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.792 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds