Wall clock time and date at job start Mon Mar 30 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 O 1.42903 * 109.46995 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99604 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47031 * 180.02562 * 5 4 3 7 7 N 1.29946 * 126.29198 * 270.02594 * 6 5 4 8 8 O 1.21298 * 110.25505 * 179.68388 * 7 6 5 9 9 C 1.33643 * 109.80846 * 0.46943 * 8 7 6 10 10 C 1.50699 * 126.54930 * 179.80105 * 9 8 7 11 11 H 1.09004 * 109.46963 * 179.68504 * 10 9 8 12 12 C 1.53004 * 109.47110 * 59.69075 * 10 9 8 13 13 C 1.52997 * 109.47337 * 299.68812 * 10 9 8 14 14 C 1.50701 * 109.47212 * 184.99952 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.31130 * 106.89670 * 359.53964 * 9 8 7 23 23 H 1.08996 * 109.47060 * 300.00070 * 1 2 3 24 24 H 1.09005 * 109.46978 * 59.99897 * 1 2 3 25 25 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47490 * 240.00219 * 2 1 3 27 27 H 1.09001 * 109.46813 * 119.99620 * 2 1 3 28 28 H 1.08998 * 109.46723 * 59.99749 * 3 2 1 29 29 H 1.08992 * 109.47113 * 299.99667 * 3 2 1 30 30 H 1.09001 * 109.47024 * 60.00033 * 5 4 3 31 31 H 1.08998 * 109.47484 * 300.00245 * 5 4 3 32 32 H 1.09004 * 109.46741 * 299.99564 * 12 10 9 33 33 H 1.09000 * 109.47403 * 59.99699 * 12 10 9 34 34 H 1.09001 * 109.46917 * 180.02562 * 12 10 9 35 35 H 1.09002 * 109.47153 * 64.99954 * 13 10 9 36 36 H 1.09001 * 109.46832 * 305.00144 * 13 10 9 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0001 7 7 6.3192 2.5682 1.0476 8 8 7.4809 2.4700 0.7125 9 6 7.5690 2.4686 -0.6210 10 6 8.8321 2.3681 -1.4368 11 1 8.5821 2.3877 -2.4975 12 6 9.5498 1.0578 -1.1062 13 6 9.7478 3.5485 -1.1066 14 6 10.9543 3.5161 -2.0091 15 1 11.0575 2.7322 -2.7448 16 6 11.9260 4.4878 -1.8961 17 7 11.8001 5.4426 -1.0006 18 14 13.4211 4.4480 -3.0152 19 1 12.9825 4.5422 -4.4309 20 1 14.3099 5.5937 -2.6947 21 1 14.1598 3.1763 -2.8094 22 7 6.3460 2.5658 -1.0839 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.7282 3.2894 0.8896 31 1 3.7290 3.2884 -0.8903 32 1 9.7999 1.0382 -0.0454 33 1 8.8975 0.2169 -1.3414 34 1 10.4636 0.9854 -1.6960 35 1 10.0694 3.4793 -0.0674 36 1 9.2059 4.4821 -1.2579 37 1 12.4839 6.1260 -0.9209 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233234460.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:24 Heat of formation + Delta-G solvation = -23.391229 kcal Electronic energy + Delta-G solvation = -18216.561697 eV Core-core repulsion = 15188.955406 eV Total energy + Delta-G solvation = -3027.606291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.67968 -39.37410 -37.56704 -36.76822 -34.77305 -34.38953 -32.59089 -29.28069 -28.98265 -26.61983 -26.30471 -24.74800 -23.83867 -22.49403 -21.17017 -19.24685 -18.64195 -18.35133 -17.64416 -17.24832 -16.56259 -16.42761 -16.16807 -15.22023 -15.06301 -14.42595 -14.40499 -13.88969 -13.64290 -13.28340 -13.21113 -13.02909 -12.85407 -12.79850 -12.67132 -12.60576 -12.28786 -12.21547 -11.96974 -11.87196 -11.81338 -11.62721 -11.26444 -10.88390 -10.77842 -10.52807 -8.16728 -6.27339 0.01390 0.97474 1.48016 1.50273 1.57571 1.78512 2.26403 2.46259 2.83016 3.09109 3.18745 3.78510 3.99201 4.02798 4.11435 4.14183 4.27967 4.35402 4.38676 4.50371 4.54673 4.62002 4.74504 4.79401 4.82929 5.04099 5.07770 5.13604 5.20751 5.33410 5.36719 5.41922 5.58735 5.80829 6.01558 6.17390 6.86392 7.02029 7.41852 8.95644 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.053964 B = 0.003387 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.737562 B = 8263.748769 C = 8387.130319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.055 3.945 4 O -0.409 6.409 5 C 0.163 3.837 6 C 0.162 3.838 7 N -0.394 5.394 8 O 0.066 5.934 9 C 0.215 3.785 10 C 0.009 3.991 11 H 0.114 0.886 12 C -0.130 4.130 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.079 0.921 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.266 1.266 20 H -0.291 1.291 21 H -0.262 1.262 22 N -0.501 5.501 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.006 0.994 36 H -0.011 1.011 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.115 -8.775 0.652 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.020 4.020 4 O -0.328 6.328 5 C 0.085 3.915 6 C -0.111 4.111 7 N -0.106 5.106 8 O 0.011 5.989 9 C -0.004 4.004 10 C -0.012 4.012 11 H 0.132 0.868 12 C -0.187 4.187 13 C -0.002 4.002 14 C -0.567 4.567 15 H 0.097 0.903 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.217 1.217 21 H -0.187 1.187 22 N -0.236 5.236 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.024 0.976 36 H 0.008 0.992 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.598 -8.756 1.228 20.592 hybrid contribution 0.964 0.717 -0.244 1.226 sum -17.633 -8.039 0.984 19.404 Atomic orbital electron populations 1.21667 0.92699 1.02999 1.02768 1.21496 0.97262 0.94787 1.02696 1.22874 0.78015 0.99178 1.01946 1.87891 1.22456 1.26600 1.95821 1.20489 0.80226 0.86247 1.04534 1.26030 1.00579 1.00913 0.83619 1.74560 0.89914 1.21323 1.24833 1.85269 1.22484 1.65487 1.25694 1.29603 0.97352 0.91932 0.81532 1.20189 0.84403 0.99753 0.96810 0.86762 1.21749 1.01103 0.93202 1.02688 1.19044 0.93387 0.90907 0.96838 1.21471 1.04742 1.11508 1.18947 0.90303 1.25953 1.01767 0.94973 0.97012 1.70107 1.36114 1.15079 1.36227 0.85484 0.78526 0.77828 0.79122 1.19124 1.21678 1.18694 1.71917 1.00083 1.21877 1.29682 0.91741 0.91735 0.91323 0.91912 0.91959 0.91469 0.91409 0.88391 0.88108 0.92538 0.91444 0.89492 0.97572 0.99230 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.97 6.30 30.60 0.19 -1.77 16 3 C 0.06 0.96 5.94 71.98 0.43 1.39 16 4 O -0.41 -10.78 10.33 -148.98 -1.54 -12.32 16 5 C 0.16 4.18 6.56 71.24 0.47 4.65 16 6 C 0.16 5.77 7.85 138.46 1.09 6.85 16 7 N -0.39 -15.27 12.16 -60.32 -0.73 -16.00 16 8 O 0.07 2.70 11.31 74.84 0.85 3.55 16 9 C 0.22 8.59 7.02 88.38 0.62 9.21 16 10 C 0.01 0.35 2.81 -11.54 -0.03 0.31 16 11 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 12 C -0.13 -4.35 8.99 71.98 0.65 -3.70 16 13 C 0.04 1.81 4.43 29.85 0.13 1.95 16 14 C -0.53 -27.61 8.41 25.60 0.22 -27.40 16 15 H 0.08 3.77 7.06 -2.91 -0.02 3.75 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.94 -55.38 13.29 21.45 0.28 -55.09 16 18 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 N -0.50 -19.49 11.55 -303.20 -3.50 -22.99 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.90 6.95 -2.39 -0.02 2.88 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -65.10 319.46 3.36 -61.74 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.04 Total: 5.72 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 4.93 Total: -8.79 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.95 Total: -94.08 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: -0.69 Total: -8.77 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.10 3.36 -61.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233234460.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.353 kcal (2) G-P(sol) polarization free energy of solvation -65.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds