Wall clock time and date at job start Mon Mar 30 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47314 * 2 1 4 4 C 1.53000 * 109.47505 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46984 * 54.99463 * 4 3 2 6 6 O 1.42902 * 109.46922 * 295.00056 * 4 3 2 7 7 C 1.42898 * 114.00186 * 149.99499 * 6 4 3 8 8 C 1.52997 * 109.47319 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47562 * 175.00176 * 4 3 2 10 10 N 1.29947 * 126.29176 * 75.02280 * 9 4 3 11 11 O 1.21293 * 110.25701 * 179.97438 * 10 9 4 12 12 C 1.33651 * 109.80954 * 359.97438 * 11 10 9 13 13 C 1.50700 * 126.55053 * 180.02562 * 12 11 10 14 14 C 1.50692 * 109.46984 * 269.97379 * 13 12 11 15 15 H 1.07998 * 120.00547 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99807 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99758 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00123 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47103 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47168 * 120.00265 * 18 16 14 21 21 H 1.48499 * 109.47472 * 240.00259 * 18 16 14 22 22 N 1.31131 * 106.89338 * 359.76974 * 12 11 10 23 23 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46660 * 300.00273 * 1 2 3 25 25 H 1.08999 * 109.46864 * 60.00213 * 1 2 3 26 26 H 1.09000 * 109.46660 * 239.99727 * 2 1 3 27 27 H 1.08997 * 109.46855 * 120.00332 * 2 1 3 28 28 H 1.09000 * 109.47608 * 59.99689 * 3 2 1 29 29 H 1.09006 * 109.47406 * 300.00240 * 3 2 1 30 30 H 1.09002 * 109.47259 * 300.00293 * 7 6 4 31 31 H 1.09001 * 109.47074 * 60.00315 * 7 6 4 32 32 H 1.08996 * 109.47853 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47153 * 300.00307 * 8 7 6 34 34 H 1.08998 * 109.47533 * 59.99936 * 8 7 6 35 35 H 1.08997 * 109.46977 * 29.97778 * 13 12 11 36 36 H 1.09003 * 109.46771 * 149.97415 * 13 12 11 37 37 H 0.97008 * 119.99777 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8426 6 8 4.0469 0.8729 1.2201 7 6 5.3064 0.2089 1.0988 8 6 5.7164 -0.3596 2.4588 9 6 4.0724 2.8578 -0.1244 10 7 4.0740 3.7581 0.8126 11 8 4.5446 4.7959 0.3971 12 6 4.8992 4.6518 -0.8835 13 6 5.5213 5.7029 -1.7662 14 6 4.4350 6.4774 -2.4670 15 1 3.3979 6.2333 -2.2905 16 6 4.7652 7.4984 -3.3327 17 7 6.0282 7.7960 -3.5473 18 14 3.4188 8.4591 -4.2008 19 1 2.0921 7.9325 -3.7910 20 1 3.5172 9.8939 -3.8309 21 1 3.5766 8.3149 -5.6704 22 7 4.6074 3.4193 -1.2232 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 5.2210 -0.6032 0.3768 31 1 6.0604 0.9192 0.7593 32 1 6.6774 -0.8656 2.3665 33 1 5.8017 0.4522 3.1812 34 1 4.9625 -1.0699 2.7980 35 1 6.1172 6.3826 -1.1572 36 1 6.1610 5.2230 -2.5069 37 1 6.2605 8.5146 -4.1561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233360445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:17 Heat of formation + Delta-G solvation = -8.505941 kcal Electronic energy + Delta-G solvation = -18743.348658 eV Core-core repulsion = 15716.387841 eV Total energy + Delta-G solvation = -3026.960817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.77038 -38.65938 -35.32387 -34.75374 -33.74213 -32.10804 -31.22231 -29.01305 -28.34860 -24.80274 -24.06055 -22.93234 -22.40944 -21.26107 -20.27383 -17.48295 -16.95673 -16.84242 -16.27942 -15.66697 -14.99721 -14.83742 -14.75793 -14.09562 -13.47012 -13.22845 -12.79563 -12.51397 -12.33726 -12.22568 -12.09253 -11.82224 -11.48865 -11.41952 -11.17827 -11.04305 -10.98967 -10.81336 -10.72624 -10.59710 -10.32512 -10.11138 -9.85635 -9.80062 -8.94203 -8.63369 -6.26550 -4.32129 1.96337 2.90301 3.22188 3.30044 3.35280 3.50611 3.79461 4.14254 4.31574 4.75057 4.87861 4.95990 4.97314 5.02271 5.10555 5.13532 5.29548 5.30628 5.49241 5.54765 5.67728 5.73581 5.80808 5.82566 5.96540 5.99576 6.05366 6.16651 6.28019 6.55982 6.65699 7.09083 7.12851 7.18520 7.67296 7.90552 8.68452 8.95865 9.32891 10.83941 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.004929 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.651764 B = 5679.736644 C = 6543.931213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.111 4.111 4 C 0.191 3.809 5 H 0.088 0.912 6 O -0.366 6.366 7 C 0.054 3.946 8 C -0.148 4.148 9 C 0.126 3.874 10 N -0.384 5.384 11 O 0.062 5.938 12 C 0.236 3.764 13 C 0.101 3.899 14 C -0.523 4.523 15 H 0.062 0.938 16 C 0.066 3.934 17 N -0.888 5.888 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.505 5.505 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 -14.504 6.906 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.149 4.149 4 C 0.131 3.869 5 H 0.106 0.894 6 O -0.284 6.284 7 C -0.023 4.023 8 C -0.205 4.205 9 C -0.147 4.147 10 N -0.096 5.096 11 O 0.006 5.994 12 C 0.018 3.982 13 C 0.062 3.938 14 C -0.562 4.562 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.240 5.240 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.320 -14.895 7.533 17.241 hybrid contribution -0.341 0.806 -0.862 1.228 sum -4.660 -14.089 6.671 16.271 Atomic orbital electron populations 1.21761 0.95672 1.01475 1.01982 1.21462 0.95902 0.95906 1.02405 1.21697 0.91244 0.98231 1.03717 1.20110 0.94569 0.84033 0.88182 0.89375 1.87984 1.36562 1.72178 1.31655 1.22561 0.85785 0.95512 0.98449 1.21714 1.01162 1.01338 0.96305 1.26285 1.01699 1.00118 0.86642 1.74518 1.17732 0.93796 1.23559 1.85285 1.56753 1.30049 1.27344 1.30154 0.91544 0.93788 0.82739 1.18210 0.96251 0.88085 0.91259 1.20833 0.92272 1.16646 1.26450 0.91996 1.24928 0.95990 0.96660 0.96129 1.69935 1.16287 1.30271 1.36045 0.86297 0.81582 0.79552 0.79250 1.19569 1.20599 1.20624 1.71926 1.19400 1.06519 1.26173 0.92756 0.92666 0.92682 0.92031 0.91163 0.90514 0.90093 0.93058 0.93468 0.91147 0.91817 0.91869 0.92383 0.91369 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.28 5.83 -26.73 -0.16 -1.44 16 3 C -0.11 -1.52 4.90 -26.74 -0.13 -1.65 16 4 C 0.19 2.98 2.66 -27.88 -0.07 2.91 16 5 H 0.09 1.26 7.79 -51.93 -0.40 0.86 16 6 O -0.37 -5.51 9.51 -35.23 -0.34 -5.85 16 7 C 0.05 0.67 6.46 37.16 0.24 0.91 16 8 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 9 C 0.13 2.52 7.06 -156.37 -1.10 1.41 16 10 N -0.38 -8.19 12.16 30.90 0.38 -7.82 16 11 O 0.06 1.39 11.31 18.08 0.20 1.59 16 12 C 0.24 5.41 7.70 -13.06 -0.10 5.31 16 13 C 0.10 2.48 5.60 -29.04 -0.16 2.32 16 14 C -0.52 -14.07 9.09 -34.44 -0.31 -14.39 16 15 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 18 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 N -0.51 -11.18 11.55 -9.87 -0.11 -11.30 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -28.94 321.07 -6.31 -35.25 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.84 Total: -3.42 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.15 Total: -5.12 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 1.00 Total: -42.98 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.13 Total: -4.26 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.94 -6.31 -35.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233360445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.742 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds