Wall clock time and date at job start Mon Mar 30 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47244 * 2 1 4 4 C 1.42901 * 114.00065 * 181.34731 * 3 2 1 5 5 H 1.09002 * 109.46907 * 32.31224 * 4 3 2 6 6 C 1.50700 * 109.46976 * 272.31267 * 4 3 2 7 7 N 1.29942 * 126.28795 * 315.02636 * 6 4 3 8 8 O 1.21307 * 110.24952 * 180.02562 * 7 6 4 9 9 C 1.33642 * 109.81068 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.54955 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46920 * 269.97032 * 10 9 8 12 12 H 1.07997 * 120.00126 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99794 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00030 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00089 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47119 * 89.99812 * 15 13 11 17 17 H 1.48501 * 109.47070 * 209.99805 * 15 13 11 18 18 H 1.48491 * 109.47181 * 329.99643 * 15 13 11 19 19 N 1.31132 * 106.89560 * 359.97438 * 9 8 7 20 20 C 1.53003 * 109.46923 * 152.31309 * 4 3 2 21 21 C 1.52996 * 109.47063 * 294.34341 * 20 4 3 22 22 C 1.52994 * 109.47078 * 54.34527 * 20 4 3 23 23 H 1.09004 * 109.46897 * 60.00262 * 1 2 3 24 24 H 1.08996 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00592 * 1 2 3 26 26 H 1.08994 * 109.47075 * 239.99662 * 2 1 3 27 27 H 1.09004 * 109.46897 * 119.99738 * 2 1 3 28 28 H 1.08996 * 109.47124 * 29.97021 * 10 9 8 29 29 H 1.09000 * 109.47244 * 149.96822 * 10 9 8 30 30 H 0.96998 * 119.99918 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.46703 * 174.34533 * 20 4 3 32 32 H 1.09010 * 109.47212 * 63.78830 * 21 20 4 33 33 H 1.08998 * 109.46989 * 183.78356 * 21 20 4 34 34 H 1.09001 * 109.47398 * 303.78599 * 21 20 4 35 35 H 1.08999 * 109.47268 * 60.00280 * 22 20 4 36 36 H 1.09005 * 109.47165 * 179.97438 * 22 20 4 37 37 H 1.08994 * 109.47358 * 299.99604 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4306 1.4602 -0.0307 5 1 3.8490 0.6274 -0.5960 6 6 3.9672 1.4316 1.3772 7 7 3.4934 2.0871 2.3943 8 8 4.1481 1.8509 3.3879 9 6 5.1318 0.9969 3.0897 10 6 6.1656 0.4512 4.0408 11 6 7.3666 1.3614 4.0535 12 1 7.3799 2.2466 3.4350 13 6 8.4481 1.0645 4.8554 14 7 9.4961 1.8590 4.8669 15 14 8.4249 -0.4664 5.9258 16 1 8.9898 -1.6103 5.1659 17 1 9.2401 -0.2307 7.1444 18 1 7.0263 -0.7750 6.3180 19 7 5.0250 0.7237 1.8116 20 6 3.8233 2.7791 -0.6995 21 6 3.4019 2.7505 -2.1700 22 6 3.1217 3.9392 0.0096 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 5.7424 0.3942 5.0437 29 1 6.4677 -0.5446 3.7168 30 1 10.2571 1.6499 5.4308 31 1 4.9030 2.9125 -0.6335 32 1 2.3158 2.6846 -2.2356 33 1 3.7410 3.6616 -2.6629 34 1 3.8486 1.8849 -2.6592 35 1 3.4220 3.9596 1.0572 36 1 3.4018 4.8788 -0.4666 37 1 2.0420 3.8058 -0.0565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233756554.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:45 Heat of formation + Delta-G solvation = 2.982040 kcal Electronic energy + Delta-G solvation = -19155.933333 eV Core-core repulsion = 16129.470673 eV Total energy + Delta-G solvation = -3026.462661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.86778 -38.87492 -35.49658 -34.82338 -33.63969 -31.97676 -31.09083 -29.06506 -27.08068 -26.99804 -23.89030 -23.01780 -22.64827 -20.96552 -19.89623 -17.66238 -17.06043 -16.71178 -16.58238 -15.77329 -15.12010 -14.58855 -14.34680 -14.08123 -13.73837 -13.07986 -12.72103 -12.59333 -12.54020 -12.38460 -12.03135 -11.77184 -11.57973 -11.57618 -11.29175 -11.02945 -10.91553 -10.76446 -10.68288 -10.64125 -10.29347 -10.23611 -9.84564 -9.69685 -9.02061 -8.76953 -6.25455 -4.29795 1.87703 2.82953 3.19046 3.26170 3.27226 3.47593 3.67139 4.09559 4.24618 4.70949 4.80760 4.92431 4.95284 5.08582 5.10494 5.13462 5.27082 5.43049 5.54671 5.65871 5.72200 5.76752 5.81978 5.89431 5.98755 6.00390 6.09112 6.32352 6.37968 6.50897 6.52183 6.60596 6.82397 7.09308 7.30836 8.22037 8.73940 8.86554 9.28675 10.86725 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.029339 B = 0.005165 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.122420 B = 5420.157065 C = 5925.569921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.194 3.806 5 H 0.088 0.912 6 C 0.130 3.870 7 N -0.377 5.377 8 O 0.065 5.935 9 C 0.240 3.760 10 C 0.070 3.930 11 C -0.528 4.528 12 H 0.077 0.923 13 C 0.080 3.920 14 N -0.887 5.887 15 Si 0.878 3.122 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 N -0.500 5.500 20 C -0.087 4.087 21 C -0.141 4.141 22 C -0.144 4.144 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.269 0.731 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 -2.972 -9.942 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.279 6.279 4 C 0.134 3.866 5 H 0.106 0.894 6 C -0.144 4.144 7 N -0.089 5.089 8 O 0.008 5.992 9 C 0.021 3.979 10 C 0.031 3.969 11 C -0.567 4.567 12 H 0.095 0.905 13 C -0.124 4.124 14 N -0.524 5.524 15 Si 0.704 3.296 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 N -0.235 5.235 20 C -0.106 4.106 21 C -0.198 4.198 22 C -0.201 4.201 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.508 -2.453 -10.304 17.963 hybrid contribution 0.561 -1.003 0.792 1.396 sum -13.947 -3.456 -9.511 17.232 Atomic orbital electron populations 1.21711 0.93551 1.02115 1.03094 1.22556 0.95657 0.83921 1.00205 1.87980 1.19282 1.26290 1.94390 1.20179 0.81088 0.99757 0.85591 0.89432 1.26266 0.93457 0.95393 0.99238 1.74542 1.17885 1.21657 0.94781 1.85288 1.33320 1.49276 1.31323 1.29441 0.89536 0.86833 0.92063 1.18556 0.89392 0.97635 0.91343 1.20617 0.98167 1.10124 1.27747 0.90459 1.24858 0.94777 0.96718 0.96068 1.69864 1.06026 1.37354 1.39166 0.86811 0.79012 0.83322 0.80505 1.19673 1.20703 1.18624 1.71902 1.17443 1.25685 1.08479 1.21209 1.00942 0.93071 0.95411 1.21770 1.02064 1.01720 0.94261 1.21762 1.01186 0.96295 1.00903 0.91849 0.91197 0.91824 0.93089 0.93599 0.92535 0.92010 0.92056 0.89645 0.91864 0.92257 0.92745 0.91925 0.92952 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.64 6.46 37.16 0.24 0.88 16 3 O -0.36 -5.24 8.71 -35.23 -0.31 -5.54 16 4 C 0.19 2.97 2.33 -27.88 -0.07 2.91 16 5 H 0.09 1.24 7.80 -51.93 -0.40 0.83 16 6 C 0.13 2.51 6.59 -156.38 -1.03 1.48 16 7 N -0.38 -7.71 10.57 30.90 0.33 -7.38 16 8 O 0.06 1.39 11.31 18.10 0.20 1.59 16 9 C 0.24 5.29 7.70 -13.05 -0.10 5.19 16 10 C 0.07 1.59 4.67 -29.03 -0.14 1.45 16 11 C -0.53 -14.38 9.65 -34.44 -0.33 -14.71 16 12 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 14 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 15 Si 0.88 19.78 27.47 -169.99 -4.67 15.11 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 19 N -0.50 -10.75 11.55 -9.87 -0.11 -10.86 16 20 C -0.09 -1.20 2.74 -90.62 -0.25 -1.45 16 21 C -0.14 -1.51 9.06 37.16 0.34 -1.17 16 22 C -0.14 -2.07 8.75 37.15 0.33 -1.74 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.52 8.05 -51.93 -0.42 0.11 16 27 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.06 1.20 7.20 -51.93 -0.37 0.82 16 29 H 0.06 1.34 7.57 -51.93 -0.39 0.95 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.67 7.94 -51.92 -0.41 0.25 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.07 6.27 -51.93 -0.33 0.74 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.91 7.54 -51.93 -0.39 0.52 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -29.76 311.79 -5.50 -35.26 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.69 Total: -1.52 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.73 Total: -6.13 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.99 Total: -43.46 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.10 Total: -3.95 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.76 -5.50 -35.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233756554.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.237 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds