Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46997 * 2 1 4 4 C 1.42897 * 113.99715 * 184.75127 * 3 2 1 5 5 H 1.09005 * 109.47366 * 327.01379 * 4 3 2 6 6 C 1.50702 * 109.47476 * 87.01294 * 4 3 2 7 7 N 1.30449 * 126.06993 * 44.97253 * 6 4 3 8 8 O 1.21279 * 110.68317 * 180.02562 * 7 6 4 9 9 C 1.34749 * 109.53401 * 0.02562 * 8 7 6 10 10 C 1.40342 * 126.79728 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00375 * 186.32889 * 10 9 8 12 12 C 1.40459 * 119.99619 * 6.33732 * 10 9 8 13 13 N 1.30511 * 120.00158 * 6.59527 * 12 10 9 14 14 Si 1.86799 * 120.00068 * 186.59786 * 12 10 9 15 15 H 1.48497 * 109.47283 * 94.98115 * 14 12 10 16 16 H 1.48499 * 109.47232 * 214.98364 * 14 12 10 17 17 H 1.48505 * 109.46849 * 334.98104 * 14 12 10 18 18 N 1.33335 * 106.41258 * 359.97438 * 9 8 7 19 19 C 1.53003 * 109.47046 * 207.01341 * 4 3 2 20 20 C 1.52991 * 109.46921 * 303.84111 * 19 4 3 21 21 C 1.53002 * 109.46839 * 63.84026 * 19 4 3 22 22 C 1.52997 * 109.47248 * 183.83447 * 19 4 3 23 23 H 1.08998 * 109.47333 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47277 * 299.99681 * 1 2 3 25 25 H 1.08999 * 109.47037 * 60.00064 * 1 2 3 26 26 H 1.09003 * 109.46862 * 239.99992 * 2 1 3 27 27 H 1.08994 * 109.47338 * 120.00309 * 2 1 3 28 28 H 0.97004 * 120.00039 * 180.02562 * 13 12 10 29 29 H 1.09001 * 109.47488 * 59.99888 * 20 19 4 30 30 H 1.09009 * 109.47096 * 179.97438 * 20 19 4 31 31 H 1.09000 * 109.47209 * 299.99569 * 20 19 4 32 32 H 1.08995 * 109.47585 * 55.19599 * 21 19 4 33 33 H 1.08996 * 109.46917 * 175.20125 * 21 19 4 34 34 H 1.09004 * 109.47105 * 295.19177 * 21 19 4 35 35 H 1.09009 * 109.46909 * 60.00294 * 22 19 4 36 36 H 1.08996 * 109.47195 * 179.97438 * 22 19 4 37 37 H 1.08999 * 109.47504 * 300.00564 * 22 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4266 1.4616 -0.1081 5 1 3.8984 0.6163 0.3929 6 6 3.8209 1.4672 -1.5626 7 7 3.2437 2.1503 -2.5123 8 8 3.7868 1.9467 -3.5774 9 6 4.8036 1.0792 -3.4060 10 6 5.6707 0.5940 -4.3971 11 1 6.3865 -0.1784 -4.1575 12 6 5.6078 1.1132 -5.7007 13 7 4.8356 2.1328 -5.9605 14 14 6.6291 0.3442 -7.0627 15 1 5.8058 -0.6487 -7.7985 16 1 7.0822 1.4033 -7.9998 17 1 7.8114 -0.3333 -6.4724 18 7 4.8228 0.7728 -2.1085 19 6 3.8849 2.7648 0.5495 20 6 3.1503 3.9446 -0.0901 21 6 3.5703 2.7189 2.0461 22 6 5.3924 2.9340 0.3503 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.7919 2.4911 -6.8608 29 1 2.0763 3.8241 0.0518 30 1 3.4765 4.8731 0.3787 31 1 3.3745 3.9773 -1.1563 32 1 4.0237 1.8306 2.4857 33 1 3.9725 3.6093 2.5294 34 1 2.4902 2.6844 2.1895 35 1 5.6166 2.9667 -0.7159 36 1 5.7188 3.8626 0.8184 37 1 5.9157 2.0934 0.8060 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233763207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -16.004924 kcal Electronic energy + Delta-G solvation = -19808.964668 eV Core-core repulsion = 16781.678670 eV Total energy + Delta-G solvation = -3027.285997 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.02326 -38.59705 -35.74282 -34.08767 -33.32265 -30.99692 -30.23312 -26.97118 -26.88097 -26.39480 -25.91034 -22.54737 -21.58485 -20.86798 -18.77460 -17.68252 -16.14364 -15.81998 -15.60669 -15.35132 -14.87558 -14.48665 -13.77445 -13.44686 -13.43276 -13.06034 -12.41496 -12.28347 -11.88469 -11.73822 -11.69305 -11.64670 -11.42267 -11.23243 -11.17767 -10.96053 -10.58189 -10.47726 -10.32480 -10.21729 -9.96531 -9.88673 -9.45417 -9.27273 -8.87161 -8.22241 -7.07391 -4.99045 2.79562 2.96514 3.02527 3.29713 3.74167 3.82624 4.06903 4.93083 5.02236 5.19837 5.27308 5.31191 5.43325 5.45485 5.54545 5.63871 5.75056 5.83669 5.94079 6.01971 6.07837 6.15105 6.16635 6.27483 6.29413 6.40274 6.49971 6.54986 6.56143 6.82302 6.86449 6.96537 7.40359 7.63264 7.92830 8.13662 8.34909 8.49223 9.92223 10.43129 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.026941 B = 0.006271 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.050526 B = 4463.912955 C = 4953.223622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 O -0.367 6.367 4 C 0.204 3.796 5 H 0.072 0.928 6 C 0.138 3.862 7 N -0.443 5.443 8 O 0.043 5.957 9 C 0.302 3.698 10 C -0.420 4.420 11 H 0.111 0.889 12 C 0.072 3.928 13 N -0.764 5.764 14 Si 0.934 3.066 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.256 1.256 18 N -0.611 5.611 19 C -0.056 4.056 20 C -0.136 4.136 21 C -0.134 4.134 22 C -0.135 4.135 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.291 0.709 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -0.962 7.708 8.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.285 6.285 4 C 0.144 3.856 5 H 0.089 0.911 6 C -0.136 4.136 7 N -0.171 5.171 8 O -0.005 6.005 9 C 0.111 3.889 10 C -0.458 4.458 11 H 0.129 0.871 12 C -0.152 4.152 13 N -0.392 5.392 14 Si 0.757 3.243 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.180 1.180 18 N -0.357 5.357 19 C -0.057 4.057 20 C -0.193 4.193 21 C -0.192 4.192 22 C -0.192 4.192 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.806 -0.354 8.049 8.531 hybrid contribution 0.697 -0.612 -0.978 1.348 sum -2.109 -0.966 7.071 7.442 Atomic orbital electron populations 1.21697 0.94079 1.01693 1.02868 1.22434 0.95210 0.84477 0.99859 1.87911 1.20863 1.25769 1.93915 1.19968 0.80939 0.97813 0.86878 0.91054 1.25276 0.94079 0.96257 0.98012 1.74335 1.23502 1.26355 0.92910 1.85546 1.37117 1.52047 1.25815 1.24209 0.87874 0.86172 0.90633 1.18533 1.16076 1.20268 0.90903 0.87089 1.26165 0.95103 0.93662 1.00318 1.69641 1.29213 1.16862 1.23442 0.85863 0.80101 0.79422 0.78952 1.18974 1.19729 1.17993 1.72233 1.25259 1.33039 1.05132 1.20513 0.95932 0.94248 0.94970 1.21797 1.00301 0.95299 1.01946 1.21807 1.01879 1.01130 0.94366 1.21779 0.93740 1.00879 1.02842 0.91571 0.92167 0.91852 0.93493 0.93792 0.89755 0.92188 0.93816 0.91125 0.93105 0.92738 0.92081 0.91922 0.92769 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 37.16 0.38 -1.61 16 2 C 0.06 0.95 6.44 37.16 0.24 1.19 16 3 O -0.37 -7.09 8.72 -35.23 -0.31 -7.40 16 4 C 0.20 4.12 1.93 -27.88 -0.05 4.06 16 5 H 0.07 1.39 7.87 -51.93 -0.41 0.98 16 6 C 0.14 3.44 4.99 -156.79 -0.78 2.66 16 7 N -0.44 -12.03 10.48 31.51 0.33 -11.70 16 8 O 0.04 1.25 9.82 15.14 0.15 1.40 16 9 C 0.30 8.56 7.79 -16.35 -0.13 8.43 16 10 C -0.42 -11.09 9.47 -37.95 -0.36 -11.44 16 11 H 0.11 2.77 7.86 -52.49 -0.41 2.36 16 12 C 0.07 1.76 5.49 -17.28 -0.09 1.66 16 13 N -0.76 -19.53 12.13 55.57 0.67 -18.86 16 14 Si 0.93 17.65 29.57 -169.99 -5.03 12.62 16 15 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 16 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 18 N -0.61 -16.53 11.60 -11.51 -0.13 -16.66 16 19 C -0.06 -0.98 0.63 -154.51 -0.10 -1.08 16 20 C -0.14 -2.51 8.01 37.15 0.30 -2.21 16 21 C -0.13 -1.89 8.31 37.16 0.31 -1.58 16 22 C -0.13 -2.38 8.17 37.16 0.30 -2.08 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 29 H 0.06 1.10 7.59 -51.93 -0.39 0.71 16 30 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.07 1.54 6.19 -51.93 -0.32 1.22 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.85 7.92 -51.93 -0.41 0.44 16 35 H 0.06 1.34 7.10 -51.92 -0.37 0.97 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -29.65 309.27 -5.31 -34.96 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.67 Total: 2.97 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.02 Total: -2.00 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.87 Total: -47.21 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.16 Total: -6.00 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.65 -5.31 -34.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233763207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.955 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds