Wall clock time and date at job start Mon Mar 30 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47461 * 2 1 4 4 C 1.42894 * 114.00071 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47239 * 29.99963 * 4 3 2 6 6 C 1.52998 * 109.47126 * 269.99657 * 4 3 2 7 7 C 1.50707 * 109.46933 * 149.99736 * 4 3 2 8 8 N 1.29938 * 126.28626 * 44.97438 * 7 4 3 9 9 O 1.21303 * 110.25257 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.80859 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.55383 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47644 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47218 * 300.03142 * 11 10 9 14 14 C 1.53001 * 109.46625 * 60.02620 * 11 10 9 15 15 C 1.50706 * 109.46941 * 175.00098 * 14 11 10 16 16 H 1.07996 * 119.99778 * 0.02562 * 15 14 11 17 17 C 1.37873 * 119.99842 * 180.02562 * 15 14 11 18 18 N 1.31519 * 120.00561 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47298 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47339 * 119.99901 * 19 17 15 22 22 H 1.48506 * 109.47130 * 239.99558 * 19 17 15 23 23 N 1.31134 * 106.89776 * 359.97438 * 10 9 8 24 24 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47041 * 300.00265 * 1 2 3 26 26 H 1.09005 * 109.46884 * 60.00395 * 1 2 3 27 27 H 1.08997 * 109.47492 * 239.99633 * 2 1 3 28 28 H 1.09005 * 109.46884 * 119.99605 * 2 1 3 29 29 H 1.09007 * 109.47045 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.47081 * 299.99761 * 6 4 3 31 31 H 1.08994 * 109.47115 * 60.00497 * 6 4 3 32 32 H 1.09001 * 109.47165 * 179.97438 * 13 11 10 33 33 H 1.09004 * 109.46821 * 299.99378 * 13 11 10 34 34 H 1.09000 * 109.47276 * 59.99207 * 13 11 10 35 35 H 1.08996 * 109.47625 * 295.00009 * 14 11 10 36 36 H 1.09000 * 109.47445 * 55.00085 * 14 11 10 37 37 H 0.96996 * 120.00469 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9387 1.5006 1.4433 7 6 3.8348 2.7262 -0.7099 8 7 3.2982 3.8995 -0.5553 9 8 3.8486 4.7105 -1.2700 10 6 4.8177 4.1132 -1.9701 11 6 5.7358 4.7671 -2.9704 12 1 6.4204 4.0223 -3.3764 13 6 4.9064 5.3702 -4.1058 14 6 6.5365 5.8734 -2.2805 15 6 7.5409 6.4445 -3.2481 16 1 7.6017 6.0574 -4.2545 17 6 8.3821 7.4611 -2.8485 18 7 8.3077 7.9329 -1.6230 19 14 9.6266 8.1696 -4.0480 20 1 9.5089 7.4714 -5.3532 21 1 9.3635 9.6189 -4.2359 22 1 10.9972 7.9813 -3.5081 23 7 4.8170 2.8494 -1.6204 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.0254 1.5862 1.4437 30 1 3.5061 2.3593 1.9567 31 1 3.6466 0.5848 1.9571 32 1 5.5704 5.8435 -4.8291 33 1 4.3360 4.5820 -4.5973 34 1 4.2218 6.1149 -3.6998 35 1 5.8591 6.6617 -1.9526 36 1 7.0580 5.4601 -1.4172 37 1 8.8998 8.6479 -1.3418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233767251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:06 Heat of formation + Delta-G solvation = -0.786714 kcal Electronic energy + Delta-G solvation = -18656.499676 eV Core-core repulsion = 15629.873590 eV Total energy + Delta-G solvation = -3026.626086 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.13007 -38.65693 -35.90163 -35.27922 -32.91190 -32.15863 -30.68888 -30.00727 -27.13609 -25.00061 -24.61003 -23.02836 -22.94311 -21.73040 -19.56246 -17.60443 -17.00930 -16.82568 -16.47713 -15.85967 -15.34680 -14.58311 -14.47826 -13.72452 -13.45030 -13.30819 -12.90147 -12.63222 -12.24699 -12.18323 -12.05369 -11.92393 -11.69501 -11.38292 -11.14202 -11.12140 -10.99196 -10.90869 -10.60214 -10.53742 -10.17866 -9.93541 -9.85866 -9.24829 -9.17513 -8.45242 -6.08825 -4.12807 1.62870 2.51594 3.21608 3.27859 3.35196 3.37939 3.41065 4.04324 4.37565 4.50163 4.74314 4.79088 4.95504 5.04054 5.10393 5.27659 5.31977 5.40034 5.54470 5.65038 5.66694 5.76282 5.83908 5.87713 5.96411 6.02240 6.25005 6.33541 6.56313 6.67457 6.83275 6.95372 7.48136 7.56417 7.86771 8.22726 8.61130 8.91824 9.51760 11.02527 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.048518 B = 0.003935 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.972449 B = 7113.564210 C = 7339.850009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.187 3.813 5 H 0.090 0.910 6 C -0.168 4.168 7 C 0.156 3.844 8 N -0.372 5.372 9 O 0.080 5.920 10 C 0.219 3.781 11 C -0.001 4.001 12 H 0.106 0.894 13 C -0.135 4.135 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.498 5.498 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -13.883 1.992 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.292 6.292 4 C 0.127 3.873 5 H 0.108 0.892 6 C -0.226 4.226 7 C -0.117 4.117 8 N -0.080 5.080 9 O 0.021 5.979 10 C 0.000 4.000 11 C -0.022 4.022 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.010 4.010 15 C -0.558 4.558 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.232 5.232 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.366 -13.894 2.672 18.149 hybrid contribution 1.003 0.314 -0.538 1.181 sum -10.363 -13.580 2.134 17.215 Atomic orbital electron populations 1.21734 0.93491 1.02193 1.03351 1.22573 0.95818 0.83401 1.00284 1.88006 1.19425 1.26774 1.95027 1.19867 0.82058 0.90668 0.94703 0.89210 1.22248 1.02216 1.03375 0.94804 1.25332 0.93501 0.95365 0.97527 1.74598 1.19035 1.00831 1.13531 1.85314 1.37236 1.35401 1.39938 1.29600 0.89600 0.86628 0.94162 1.20363 0.92162 0.99281 0.90354 0.87615 1.21785 0.99809 0.99963 0.97780 1.19255 0.94492 0.91194 0.96036 1.21094 1.17937 1.18681 0.98135 0.91877 1.25007 0.97403 0.96625 0.95231 1.69976 1.38599 1.27343 1.17045 0.86488 0.81106 0.78937 0.81197 1.19570 1.20961 1.21018 1.71862 1.20389 1.16628 1.14319 0.90997 0.91725 0.91796 0.93097 0.93033 0.90771 0.91078 0.91193 0.89616 0.94076 0.92269 0.95208 0.95972 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.06 0.54 6.47 37.16 0.24 0.78 16 3 O -0.37 -5.24 9.97 -35.23 -0.35 -5.59 16 4 C 0.19 2.63 3.27 -27.88 -0.09 2.54 16 5 H 0.09 1.10 7.79 -51.93 -0.40 0.70 16 6 C -0.17 -2.03 9.51 37.16 0.35 -1.67 16 7 C 0.16 2.85 7.10 -156.38 -1.11 1.74 16 8 N -0.37 -7.38 12.16 30.90 0.38 -7.01 16 9 O 0.08 1.63 11.31 18.11 0.20 1.83 16 10 C 0.22 4.35 7.02 -13.05 -0.09 4.26 16 11 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 12 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 13 C -0.14 -2.34 8.99 37.16 0.33 -2.01 16 14 C 0.03 0.69 4.43 -27.88 -0.12 0.56 16 15 C -0.52 -13.59 8.41 -34.44 -0.29 -13.88 16 16 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 19 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 N -0.50 -9.64 11.55 -9.87 -0.11 -9.76 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.64 7.87 -51.93 -0.41 0.24 16 32 H 0.09 1.49 6.95 -51.93 -0.36 1.13 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -30.29 318.22 -5.86 -36.15 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.74 Total: -3.66 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -0.75 Total: -7.31 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.00 Total: -41.88 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.15 Total: -3.76 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.29 -5.86 -36.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233767251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.361 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds