Wall clock time and date at job start Mon Mar 30 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42905 * 109.47461 * 2 1 4 4 C 1.42894 * 114.00071 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47239 * 29.99963 * 4 3 2 6 6 C 1.52998 * 109.47126 * 269.99657 * 4 3 2 7 7 C 1.50707 * 109.46933 * 149.99736 * 4 3 2 8 8 N 1.29938 * 126.28626 * 44.97438 * 7 4 3 9 9 O 1.21303 * 110.25257 * 179.97438 * 8 7 4 10 10 C 1.33641 * 109.80859 * 0.02562 * 9 8 7 11 11 C 1.50703 * 126.55383 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47644 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47218 * 300.03142 * 11 10 9 14 14 C 1.53001 * 109.46625 * 60.02620 * 11 10 9 15 15 C 1.50706 * 109.46941 * 175.00098 * 14 11 10 16 16 H 1.07996 * 119.99778 * 0.02562 * 15 14 11 17 17 C 1.37873 * 119.99842 * 180.02562 * 15 14 11 18 18 N 1.31519 * 120.00561 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47298 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47339 * 119.99901 * 19 17 15 22 22 H 1.48506 * 109.47130 * 239.99558 * 19 17 15 23 23 N 1.31134 * 106.89776 * 359.97438 * 10 9 8 24 24 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47041 * 300.00265 * 1 2 3 26 26 H 1.09005 * 109.46884 * 60.00395 * 1 2 3 27 27 H 1.08997 * 109.47492 * 239.99633 * 2 1 3 28 28 H 1.09005 * 109.46884 * 119.99605 * 2 1 3 29 29 H 1.09007 * 109.47045 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.47081 * 299.99761 * 6 4 3 31 31 H 1.08994 * 109.47115 * 60.00497 * 6 4 3 32 32 H 1.09001 * 109.47165 * 179.97438 * 13 11 10 33 33 H 1.09004 * 109.46821 * 299.99378 * 13 11 10 34 34 H 1.09000 * 109.47276 * 59.99207 * 13 11 10 35 35 H 1.08996 * 109.47625 * 295.00009 * 14 11 10 36 36 H 1.09000 * 109.47445 * 55.00085 * 14 11 10 37 37 H 0.96996 * 120.00469 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9387 1.5006 1.4433 7 6 3.8348 2.7262 -0.7099 8 7 3.2982 3.8995 -0.5553 9 8 3.8486 4.7105 -1.2700 10 6 4.8177 4.1132 -1.9701 11 6 5.7358 4.7671 -2.9704 12 1 6.4204 4.0223 -3.3764 13 6 4.9064 5.3702 -4.1058 14 6 6.5365 5.8734 -2.2805 15 6 7.5409 6.4445 -3.2481 16 1 7.6017 6.0574 -4.2545 17 6 8.3821 7.4611 -2.8485 18 7 8.3077 7.9329 -1.6230 19 14 9.6266 8.1696 -4.0480 20 1 9.5089 7.4714 -5.3532 21 1 9.3635 9.6189 -4.2359 22 1 10.9972 7.9813 -3.5081 23 7 4.8170 2.8494 -1.6204 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.0254 1.5862 1.4437 30 1 3.5061 2.3593 1.9567 31 1 3.6466 0.5848 1.9571 32 1 5.5704 5.8435 -4.8291 33 1 4.3360 4.5820 -4.5973 34 1 4.2218 6.1149 -3.6998 35 1 5.8591 6.6617 -1.9526 36 1 7.0580 5.4601 -1.4172 37 1 8.8998 8.6479 -1.3418 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233767251.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:06 Heat of formation + Delta-G solvation = -20.892391 kcal Electronic energy + Delta-G solvation = -18657.371523 eV Core-core repulsion = 15629.873590 eV Total energy + Delta-G solvation = -3027.497934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.64762 -39.65129 -37.55924 -36.74622 -34.61982 -33.48649 -32.02344 -31.01366 -28.99890 -26.36071 -26.13453 -24.66592 -23.79740 -23.18328 -21.04719 -19.14075 -18.63798 -18.35272 -17.80298 -16.74646 -16.54605 -16.44307 -16.12033 -15.10264 -14.57868 -14.42675 -14.33333 -13.85291 -13.68433 -13.60406 -13.10210 -13.00147 -12.90397 -12.79444 -12.73114 -12.64123 -12.32932 -12.26610 -12.22858 -12.00757 -11.88069 -11.62295 -11.22876 -10.89341 -10.71708 -10.55060 -8.17136 -6.27775 0.08672 1.06759 1.46803 1.48007 1.60416 1.83203 2.09650 2.45852 2.86826 3.10826 3.18566 3.68165 3.89860 4.07329 4.15426 4.20968 4.27983 4.28688 4.41519 4.45290 4.52512 4.66271 4.77012 4.79758 4.89017 4.97790 5.04218 5.07293 5.08772 5.23881 5.36777 5.41887 5.58767 5.80917 6.06041 6.17036 6.86650 7.08551 7.41652 8.95689 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.048518 B = 0.003935 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.972449 B = 7113.564210 C = 7339.850009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.399 6.399 4 C 0.184 3.816 5 H 0.111 0.889 6 C -0.163 4.163 7 C 0.161 3.839 8 N -0.392 5.392 9 O 0.062 5.938 10 C 0.213 3.787 11 C 0.009 3.991 12 H 0.116 0.884 13 C -0.129 4.129 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.080 0.920 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.253 1.253 21 H -0.283 1.283 22 H -0.285 1.285 23 N -0.502 5.502 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.004 0.996 36 H -0.011 1.011 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 -15.666 0.892 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.318 6.318 4 C 0.125 3.875 5 H 0.129 0.871 6 C -0.221 4.221 7 C -0.113 4.113 8 N -0.103 5.103 9 O 0.007 5.993 10 C -0.006 4.006 11 C -0.011 4.011 12 H 0.134 0.866 13 C -0.187 4.187 14 C -0.002 4.002 15 C -0.564 4.564 16 H 0.098 0.902 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.177 1.177 21 H -0.209 1.209 22 H -0.211 1.211 23 N -0.237 5.237 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.007 0.993 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.497 -15.675 1.546 19.501 hybrid contribution 0.974 0.781 -0.136 1.255 sum -10.523 -14.895 1.410 18.292 Atomic orbital electron populations 1.21772 0.92700 1.03692 1.02458 1.22893 0.96497 0.81710 1.01849 1.87983 1.19052 1.29559 1.95201 1.20142 0.82746 0.89185 0.95469 0.87084 1.22230 1.01848 1.04369 0.93639 1.26206 0.92259 0.96341 0.96464 1.74594 1.19949 1.01548 1.14223 1.85294 1.37618 1.35970 1.40396 1.29601 0.89750 0.87023 0.94254 1.20184 0.92308 0.98007 0.90636 0.86625 1.21745 0.99587 1.00625 0.96752 1.19047 0.94147 0.91852 0.95168 1.21534 1.17654 1.18292 0.98940 0.90209 1.25961 0.99672 0.97269 0.96878 1.70123 1.39946 1.28243 1.19292 0.85373 0.78056 0.78045 0.79428 1.17670 1.20861 1.21089 1.71872 1.20784 1.16301 1.14705 0.88281 0.92245 0.93067 0.92106 0.90805 0.91000 0.92831 0.87778 0.89498 0.91326 0.92692 0.97745 0.99306 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.78 6.47 71.98 0.47 1.25 16 3 O -0.40 -10.58 9.97 -148.98 -1.49 -12.07 16 4 C 0.18 4.89 3.27 29.85 0.10 4.99 16 5 H 0.11 2.44 7.79 -2.39 -0.02 2.42 16 6 C -0.16 -3.65 9.51 71.98 0.68 -2.97 16 7 C 0.16 5.79 7.10 138.47 0.98 6.78 16 8 N -0.39 -15.74 12.16 -60.33 -0.73 -16.48 16 9 O 0.06 2.58 11.31 74.85 0.85 3.42 16 10 C 0.21 8.50 7.02 88.38 0.62 9.12 16 11 C 0.01 0.35 2.81 -11.54 -0.03 0.32 16 12 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 13 C -0.13 -4.31 8.99 71.98 0.65 -3.66 16 14 C 0.04 1.80 4.43 29.85 0.13 1.93 16 15 C -0.53 -27.47 8.41 25.60 0.22 -27.25 16 16 H 0.08 3.82 7.05 -2.91 -0.02 3.80 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.94 -55.56 13.29 21.45 0.28 -55.27 16 19 Si 0.97 42.20 29.54 68.60 2.03 44.23 16 20 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 N -0.50 -19.18 11.55 -303.21 -3.50 -22.69 16 24 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 28 H 0.07 0.92 7.87 -2.38 -0.02 0.91 16 29 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.60 7.87 -2.39 -0.02 1.58 16 32 H 0.09 2.88 6.95 -2.39 -0.02 2.86 16 33 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 36 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -65.97 318.22 3.49 -62.47 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.04 Total: 6.86 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.02 Total: -10.48 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.95 Total: -94.44 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.64 Total: -8.64 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -65.97 3.49 -62.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233767251.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.582 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds