Wall clock time and date at job start Mon Mar 30 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47260 * 2 1 4 4 C 1.42908 * 113.99719 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47298 * 329.99696 * 4 3 2 6 6 C 1.53000 * 109.47021 * 90.00001 * 4 3 2 7 7 C 1.50700 * 109.46649 * 209.99835 * 4 3 2 8 8 N 1.29942 * 126.28978 * 314.97557 * 7 4 3 9 9 O 1.21306 * 110.25137 * 180.02562 * 8 7 4 10 10 C 1.33645 * 109.81154 * 359.97438 * 9 8 7 11 11 C 1.50691 * 126.55129 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47367 * 269.95883 * 11 10 9 13 13 H 1.09000 * 109.47318 * 55.00068 * 12 11 10 14 14 C 1.53004 * 109.47155 * 294.99914 * 12 11 10 15 15 C 1.50697 * 109.47364 * 175.00075 * 12 11 10 16 16 H 1.08003 * 120.00118 * 359.97438 * 15 12 11 17 17 C 1.37886 * 120.00162 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99628 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 119.99933 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47265 * 90.00273 * 19 17 15 21 21 H 1.48505 * 109.46854 * 209.99890 * 19 17 15 22 22 H 1.48499 * 109.47331 * 329.99769 * 19 17 15 23 23 N 1.31138 * 106.89453 * 0.02562 * 10 9 8 24 24 H 1.09001 * 109.47486 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.47004 * 300.00224 * 1 2 3 26 26 H 1.08996 * 109.47201 * 59.99956 * 1 2 3 27 27 H 1.09000 * 109.47242 * 239.99340 * 2 1 3 28 28 H 1.09008 * 109.47012 * 119.99693 * 2 1 3 29 29 H 1.08998 * 109.47183 * 299.99839 * 6 4 3 30 30 H 1.09002 * 109.47334 * 59.99717 * 6 4 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.47255 * 29.96194 * 11 10 9 33 33 H 1.09000 * 109.47143 * 149.95492 * 11 10 9 34 34 H 1.08998 * 109.46822 * 60.00095 * 14 12 11 35 35 H 1.09001 * 109.47563 * 179.97438 * 14 12 11 36 36 H 1.09000 * 109.47133 * 300.00267 * 14 12 11 37 37 H 0.96996 * 119.99346 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8636 0.6014 0.5130 6 6 3.9387 1.5004 -1.4433 7 6 3.8348 2.7262 0.7098 8 7 3.2989 3.8997 0.5545 9 8 3.8491 4.7106 1.2694 10 6 4.8174 4.1131 1.9704 11 6 5.7350 4.7669 2.9712 12 6 6.9878 5.2777 2.2568 13 1 6.6964 5.9368 1.4390 14 6 7.7766 4.0911 1.6993 15 6 7.8477 6.0384 3.2329 16 1 7.5320 6.1471 4.2601 17 6 9.0375 6.5958 2.8148 18 7 9.4222 6.4630 1.5641 19 14 10.1037 7.5381 4.0249 20 1 11.0570 6.6042 4.6763 21 1 10.8596 8.5924 3.3020 22 1 9.2424 8.1669 5.0583 23 7 4.8165 2.8491 1.6210 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.6466 0.5846 -1.9571 30 1 3.5061 2.3590 -1.9569 31 1 5.0253 1.5869 -1.4438 32 1 5.2200 5.6030 3.4442 33 1 6.0210 4.0397 3.7311 34 1 7.1546 3.5409 0.9933 35 1 8.6689 4.4550 1.1900 36 1 8.0679 3.4321 2.5172 37 1 10.2593 6.8548 1.2701 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233772733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:03 Heat of formation + Delta-G solvation = -15.190581 kcal Electronic energy + Delta-G solvation = -18776.982213 eV Core-core repulsion = 15749.731528 eV Total energy + Delta-G solvation = -3027.250685 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.58990 -39.63199 -37.54772 -36.63114 -34.54593 -33.21601 -32.09661 -31.01901 -28.33172 -27.21455 -26.12988 -24.38986 -23.74677 -22.62523 -21.19891 -19.22998 -18.47193 -18.25851 -17.79505 -16.73576 -16.56425 -16.47621 -15.87429 -14.93680 -14.66239 -14.41959 -14.27340 -13.91820 -13.67334 -13.44342 -13.04951 -13.00583 -12.87600 -12.81939 -12.65785 -12.48872 -12.30425 -12.19579 -12.09612 -11.93815 -11.74155 -11.71567 -10.93255 -10.81339 -10.68679 -10.43387 -8.07743 -6.22442 0.14391 1.13677 1.48617 1.49750 1.59440 1.88650 2.14825 2.48367 2.90132 3.19636 3.22404 3.72271 3.92303 4.15129 4.17103 4.29262 4.41723 4.44670 4.49136 4.53594 4.57318 4.73482 4.82841 4.88056 4.95172 4.98153 5.05618 5.08926 5.17548 5.24036 5.34755 5.62357 5.85837 6.06088 6.06793 6.30001 6.88431 7.14963 7.46896 8.98082 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.053833 B = 0.003986 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.999076 B = 7022.827336 C = 7212.845482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 O -0.398 6.398 4 C 0.184 3.816 5 H 0.108 0.892 6 C -0.162 4.162 7 C 0.160 3.840 8 N -0.392 5.392 9 O 0.060 5.940 10 C 0.212 3.788 11 C -0.015 4.015 12 C 0.048 3.952 13 H 0.000 1.000 14 C -0.124 4.124 15 C -0.529 4.529 16 H 0.072 0.928 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.262 1.262 23 N -0.497 5.497 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.015 0.985 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.566 -12.374 -1.959 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.317 6.317 4 C 0.124 3.876 5 H 0.126 0.874 6 C -0.220 4.220 7 C -0.114 4.114 8 N -0.103 5.103 9 O 0.005 5.995 10 C -0.007 4.007 11 C -0.054 4.054 12 C 0.029 3.971 13 H 0.018 0.982 14 C -0.182 4.182 15 C -0.567 4.567 16 H 0.090 0.910 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.186 1.186 23 N -0.232 5.232 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.110 -12.445 -2.615 18.265 hybrid contribution 1.034 0.676 0.354 1.285 sum -12.076 -11.770 -2.261 17.014 Atomic orbital electron populations 1.21768 0.92631 1.03678 1.02486 1.22884 0.96534 0.81779 1.01767 1.87977 1.19059 1.29463 1.95201 1.20110 0.82668 0.89377 0.95413 0.87386 1.22218 1.01744 1.04319 0.93752 1.26146 0.92373 0.96239 0.96645 1.74565 1.19954 1.01518 1.14305 1.85287 1.37686 1.36012 1.40516 1.29529 0.89442 0.87185 0.94553 1.20658 0.91798 1.00499 0.92475 1.18618 0.90301 0.93412 0.94815 0.98181 1.21645 1.00784 0.96940 0.98786 1.21451 1.05045 1.33326 0.96831 0.90955 1.25779 0.99138 0.97148 0.96706 1.70048 1.22977 1.45814 1.17147 0.85523 0.78766 0.78168 0.78998 1.20242 1.21613 1.18560 1.71900 1.20142 1.16639 1.14478 0.88335 0.93025 0.92192 0.90913 0.92213 0.87927 0.92717 0.91216 0.87085 0.86849 0.96586 0.92771 0.94630 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.80 6.47 71.98 0.47 1.26 16 3 O -0.40 -10.61 9.97 -148.98 -1.49 -12.10 16 4 C 0.18 4.97 3.27 29.85 0.10 5.07 16 5 H 0.11 2.48 7.79 -2.39 -0.02 2.47 16 6 C -0.16 -3.75 9.51 71.98 0.68 -3.07 16 7 C 0.16 5.70 7.10 138.46 0.98 6.68 16 8 N -0.39 -15.28 12.16 -60.30 -0.73 -16.02 16 9 O 0.06 2.38 11.31 74.81 0.85 3.23 16 10 C 0.21 8.16 6.97 88.38 0.62 8.78 16 11 C -0.02 -0.58 5.25 29.84 0.16 -0.43 16 12 C 0.05 2.30 2.29 -11.54 -0.03 2.28 16 13 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 14 C -0.12 -5.96 8.78 71.98 0.63 -5.33 16 15 C -0.53 -27.02 8.56 25.60 0.22 -26.80 16 16 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 17 C 0.01 0.58 5.30 84.66 0.45 1.03 16 18 N -0.92 -52.20 11.32 21.45 0.24 -51.96 16 19 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 23 N -0.50 -18.88 10.87 -303.18 -3.30 -22.18 16 24 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.95 7.87 -2.39 -0.02 0.93 16 28 H 0.06 0.93 8.09 -2.38 -0.02 0.91 16 29 H 0.10 1.66 7.87 -2.39 -0.02 1.64 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 33 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 34 H 0.02 0.71 6.85 -2.39 -0.02 0.69 16 35 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 36 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -62.77 314.14 3.66 -59.11 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.05 Total: 8.14 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.02 Total: -11.98 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -3.79 Total: -90.16 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.64 Total: -8.87 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -62.77 3.66 -59.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233772733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.916 kcal (2) G-P(sol) polarization free energy of solvation -62.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds