Wall clock time and date at job start Mon Mar 30 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46664 * 2 1 4 4 H 1.09001 * 109.47488 * 56.39473 * 3 2 1 5 5 C 1.50704 * 109.46788 * 176.39481 * 3 2 1 6 6 H 1.07996 * 120.00182 * 120.00127 * 5 3 2 7 7 C 1.37880 * 119.99975 * 299.99536 * 5 3 2 8 8 N 1.31521 * 119.99729 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00180 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47335 * 59.99991 * 9 7 5 11 11 H 1.48500 * 109.47305 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46976 * 300.00250 * 9 7 5 13 13 N 1.46899 * 109.47356 * 296.39150 * 3 2 1 14 14 C 1.46898 * 111.00056 * 137.23930 * 13 3 2 15 15 C 1.52998 * 109.47260 * 56.31920 * 14 13 3 16 16 C 1.52998 * 109.47130 * 296.32268 * 14 13 3 17 17 C 1.50697 * 109.47182 * 176.32190 * 14 13 3 18 18 N 1.29032 * 124.91664 * 304.69631 * 17 14 13 19 19 C 1.31774 * 117.12364 * 180.26417 * 18 17 14 20 20 C 1.33640 * 114.50293 * 0.02562 * 19 18 17 21 21 S 1.70979 * 124.91514 * 124.99824 * 17 14 13 22 22 H 1.08997 * 109.47585 * 305.12353 * 1 2 3 23 23 H 1.09005 * 109.46739 * 65.12682 * 1 2 3 24 24 H 1.09004 * 109.46780 * 185.12055 * 1 2 3 25 25 H 1.08994 * 109.47549 * 240.00217 * 2 1 3 26 26 H 1.08999 * 109.47030 * 119.99411 * 2 1 3 27 27 H 0.96996 * 119.99523 * 179.97438 * 8 7 5 28 28 H 1.00906 * 111.00098 * 261.19653 * 13 3 2 29 29 H 1.09001 * 109.47346 * 175.15885 * 15 14 13 30 30 H 1.09001 * 109.47416 * 295.16336 * 15 14 13 31 31 H 1.09007 * 109.46796 * 55.16050 * 15 14 13 32 32 H 1.09006 * 109.47331 * 305.33735 * 16 14 13 33 33 H 1.08998 * 109.47384 * 65.33387 * 16 14 13 34 34 H 1.09000 * 109.47577 * 185.33466 * 16 14 13 35 35 H 1.08000 * 122.74834 * 180.02562 * 19 18 17 36 36 H 1.08003 * 126.04032 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6247 1.9747 0.8559 5 6 3.5443 1.4435 0.0893 6 1 4.1316 1.8945 -0.6968 7 6 4.1708 0.8688 1.1748 8 7 3.4555 0.3193 2.1320 9 14 6.0355 0.8706 1.2860 10 1 6.5300 2.2708 1.2863 11 1 6.4573 0.1959 2.5398 12 1 6.6015 0.1460 0.1199 13 7 1.6227 2.1095 -1.2406 14 6 1.1438 3.4717 -0.9707 15 6 2.2350 4.2615 -0.2452 16 6 -0.1081 3.4077 -0.0934 17 6 0.8107 4.1543 -2.2723 18 7 1.6245 4.2901 -3.2644 19 6 1.1726 4.9197 -4.3301 20 6 -0.0925 5.3387 -4.2315 21 16 -0.6979 4.8672 -2.6454 22 1 -0.3634 0.5912 0.8405 23 1 -0.3633 0.4323 -0.9324 24 1 -0.3633 -1.0236 0.0917 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.8962 -0.0853 2.8954 28 1 2.3716 2.1168 -1.9168 29 1 1.9136 5.2957 -0.1213 30 1 2.4153 3.8173 0.7337 31 1 3.1537 4.2343 -0.8313 32 1 -0.8515 2.7666 -0.5672 33 1 0.1531 3.0006 0.8834 34 1 -0.5179 4.4104 0.0287 35 1 1.7754 5.0836 -5.2112 36 1 -0.6462 5.8721 -4.9901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233868846.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:39 Heat of formation + Delta-G solvation = 21.140699 kcal Electronic energy + Delta-G solvation = -17435.393117 eV Core-core repulsion = 14852.470745 eV Total energy + Delta-G solvation = -2582.922371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 254.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78499 -38.91430 -35.60432 -33.44307 -31.18885 -30.41447 -28.26801 -27.85677 -26.24176 -24.61049 -22.41803 -20.90366 -20.06932 -19.06348 -18.28153 -16.84487 -16.71659 -16.06962 -15.47426 -15.33348 -14.90236 -14.55534 -14.46932 -13.93234 -13.62894 -13.35836 -13.14622 -13.08992 -12.98713 -12.66498 -12.50114 -12.37220 -12.18945 -12.09289 -11.91809 -11.41728 -11.39276 -10.85753 -10.43583 -10.38221 -10.25186 -9.77155 -8.99500 -8.03191 -6.19296 -0.13592 0.52619 0.93278 1.39506 1.40993 1.47643 2.00302 2.43055 3.19231 3.24367 3.70887 3.94172 4.26615 4.32091 4.46625 4.64505 4.67753 4.70860 4.77872 4.82648 4.93371 4.96114 5.02227 5.20053 5.28132 5.31504 5.47102 5.49062 5.60851 5.71638 5.82312 6.13941 6.26811 6.45658 6.81401 6.95617 7.06153 7.49527 8.95493 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.027642 B = 0.006753 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.720326 B = 4145.341506 C = 4671.623394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.226 3.774 4 H 0.021 0.979 5 C -0.545 4.545 6 H 0.044 0.956 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.667 5.667 14 C 0.187 3.813 15 C -0.147 4.147 16 C -0.140 4.140 17 C 0.053 3.947 18 N -0.506 5.506 19 C 0.018 3.982 20 C -0.262 4.262 21 S 0.157 5.843 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.018 0.982 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.191 0.809 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.546 9.693 -8.448 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.039 0.961 5 C -0.584 4.584 6 H 0.062 0.938 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.768 3.232 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.297 5.297 14 C 0.092 3.908 15 C -0.208 4.208 16 C -0.198 4.198 17 C -0.225 4.225 18 N -0.221 5.221 19 C -0.132 4.132 20 C -0.401 4.401 21 S 0.411 5.589 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.037 0.963 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.208 0.792 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.590 9.220 -7.706 16.017 hybrid contribution 2.878 0.291 -0.386 2.918 sum -7.712 9.511 -8.092 14.677 Atomic orbital electron populations 1.21579 0.96351 0.99499 1.00628 1.21391 0.94450 0.98786 0.99547 1.18990 0.91476 0.91128 0.86669 0.96096 1.22025 0.93801 1.37045 1.05498 0.93824 1.25507 1.01349 0.95043 0.95620 1.69973 1.36125 1.38617 1.10034 0.85885 0.82097 0.78027 0.77214 1.20281 1.20842 1.20310 1.60996 1.41477 1.13890 1.13354 1.19395 0.95777 0.88505 0.87098 1.22290 0.98169 0.99542 1.00795 1.21980 0.95675 1.02501 0.99614 1.27099 0.94192 1.02154 0.99038 1.66165 1.36962 1.17740 1.01232 1.22163 0.94785 0.98588 0.97702 1.27522 0.99850 1.10647 1.02044 1.83623 1.15417 1.49827 1.09983 0.94190 0.92769 0.94154 0.96303 0.92033 0.92979 0.85202 0.92227 0.92505 0.94144 0.91017 0.91941 0.90441 0.79189 0.77407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.72 71.98 0.70 -4.16 16 2 C -0.10 -4.93 5.44 30.59 0.17 -4.77 16 3 C 0.23 10.91 1.17 44.17 0.05 10.96 16 4 H 0.02 1.09 4.96 -2.39 -0.01 1.08 16 5 C -0.54 -29.32 7.53 25.60 0.19 -29.13 16 6 H 0.04 2.40 7.48 -2.91 -0.02 2.38 16 7 C 0.02 1.35 5.30 84.65 0.45 1.80 16 8 N -0.91 -51.07 11.30 21.45 0.24 -50.82 16 9 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.67 -28.29 5.44 -455.78 -2.48 -30.77 16 14 C 0.19 6.80 0.92 2.78 0.00 6.80 16 15 C -0.15 -5.69 7.62 71.98 0.55 -5.14 16 16 C -0.14 -4.44 7.48 71.98 0.54 -3.90 16 17 C 0.05 1.72 6.03 88.52 0.53 2.25 16 18 N -0.51 -17.04 10.36 -191.45 -1.98 -19.03 16 19 C 0.02 0.46 11.35 83.66 0.95 1.41 16 20 C -0.26 -5.38 11.37 66.78 0.76 -4.62 16 21 S 0.16 3.74 21.51 -56.49 -1.22 2.53 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.05 2.03 7.86 -2.38 -0.02 2.01 16 24 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 3.31 5.98 -2.39 -0.01 3.29 16 27 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.33 15.19 7.81 -89.69 -0.70 14.49 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 2.46 6.48 -2.39 -0.02 2.44 16 31 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.06 2.21 6.44 -2.39 -0.02 2.19 16 34 H 0.08 2.01 7.55 -2.39 -0.02 1.99 16 35 H 0.19 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -59.82 301.22 1.85 -57.97 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.37 Total: 22.70 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.89 Total: -28.49 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.22 Total: -100.62 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.22 Total: 2.53 kcal Total: -59.82 1.85 -57.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233868846.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.113 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds