Wall clock time and date at job start Mon Mar 30 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46441 * 2 1 4 4 C 1.53008 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47404 * 299.99818 * 3 2 1 6 6 H 1.07993 * 120.00178 * 120.00501 * 5 3 2 7 7 C 1.37884 * 120.00136 * 300.00571 * 5 3 2 8 8 N 1.31513 * 119.99440 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46999 * 90.00170 * 9 7 5 11 11 H 1.48507 * 109.47068 * 209.99815 * 9 7 5 12 12 H 1.48497 * 109.47400 * 330.00022 * 9 7 5 13 13 C 1.52996 * 109.47280 * 60.00386 * 3 2 1 14 14 C 1.50691 * 109.47367 * 59.99547 * 13 3 2 15 15 N 1.31138 * 126.55417 * 90.00159 * 14 13 3 16 16 C 1.34495 * 105.61509 * 179.97438 * 15 14 13 17 17 C 1.50700 * 126.28274 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.46823 * 90.00383 * 17 16 15 19 19 C 1.42900 * 114.00043 * 179.97438 * 18 17 16 20 20 N 1.29942 * 107.42747 * 359.97438 * 16 15 14 21 21 O 1.21306 * 110.25137 * 0.02562 * 20 16 15 22 22 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47353 * 299.99597 * 1 2 3 24 24 H 1.08996 * 109.47145 * 60.00189 * 1 2 3 25 25 H 1.08996 * 109.46841 * 240.00297 * 2 1 3 26 26 H 1.08996 * 109.47145 * 119.99810 * 2 1 3 27 27 H 1.09005 * 109.46621 * 299.99831 * 4 3 2 28 28 H 1.08993 * 109.47045 * 59.99547 * 4 3 2 29 29 H 1.09000 * 109.46802 * 180.02562 * 4 3 2 30 30 H 0.97000 * 119.99435 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47188 * 299.99194 * 13 3 2 32 32 H 1.09000 * 109.47308 * 179.97438 * 13 3 2 33 33 H 1.08999 * 109.46936 * 209.99626 * 17 16 15 34 34 H 1.09000 * 109.47331 * 330.00375 * 17 16 15 35 35 H 1.09003 * 109.46863 * 299.99955 * 19 18 17 36 36 H 1.09004 * 109.47449 * 59.99219 * 19 18 17 37 37 H 1.08995 * 109.47493 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 1.5376 2.1530 -1.2305 6 1 0.9167 3.0310 -1.1314 7 6 1.8707 1.6819 -2.4828 8 7 2.6272 0.6129 -2.6034 9 14 1.2474 2.5621 -4.0079 10 1 2.2251 3.6041 -4.4124 11 1 1.0826 1.5827 -5.1121 12 1 -0.0610 3.1991 -3.7120 13 6 1.5299 2.1637 1.2492 14 6 2.0323 1.4534 2.4796 15 7 3.1527 1.6935 3.1173 16 6 3.1788 0.8242 4.1433 17 6 4.2674 0.6979 5.1777 18 8 3.9769 1.5567 6.2823 19 6 4.9525 1.5121 7.3255 20 7 2.0929 0.1135 4.0788 21 8 1.4206 0.4590 3.1300 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9337 0.9287 0.8892 28 1 3.9329 0.9289 -0.8908 29 1 3.9332 2.4703 -0.0002 30 1 2.8618 0.2818 -3.4844 31 1 0.4399 2.1638 1.2493 32 1 1.8935 3.1913 1.2495 33 1 4.3212 -0.3342 5.5243 34 1 5.2225 0.9834 4.7368 35 1 5.0201 0.4969 7.7165 36 1 5.9221 1.8142 6.9294 37 1 4.6593 2.1907 8.1264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233947294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:22 Heat of formation + Delta-G solvation = 13.466419 kcal Electronic energy + Delta-G solvation = -19489.881333 eV Core-core repulsion = 16463.873309 eV Total energy + Delta-G solvation = -3026.008024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.11031 -38.10573 -37.06558 -35.23952 -32.73882 -31.31123 -29.26039 -28.59329 -26.79362 -26.00338 -25.25172 -23.08635 -22.19881 -21.28456 -18.75950 -17.78287 -16.94591 -16.43558 -15.84212 -15.81341 -15.45984 -14.78736 -14.07848 -13.61057 -13.38651 -12.88956 -12.59203 -12.42852 -12.10987 -11.86408 -11.80210 -11.49070 -11.05586 -11.00931 -10.87779 -10.67221 -10.58740 -10.40984 -10.19331 -10.02686 -9.94425 -9.57888 -9.37799 -9.05867 -8.70928 -8.36776 -6.02036 -4.12420 1.60478 2.51721 3.27739 3.35295 3.36263 3.40782 3.58563 4.26828 4.37913 4.41128 4.98614 5.10790 5.17336 5.24480 5.27534 5.44476 5.64522 5.98931 6.09511 6.14128 6.34882 6.45610 6.49673 6.55630 6.70009 6.85644 6.93865 6.99776 7.14677 7.31950 7.44028 7.62580 7.70480 7.97476 8.12681 8.36059 8.62406 8.86099 9.52229 10.99201 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.005094 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.380502 B = 5495.449673 C = 5742.622624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.079 3.921 4 C -0.132 4.132 5 C -0.503 4.503 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.028 4.028 14 C 0.224 3.776 15 N -0.483 5.483 16 C 0.158 3.842 17 C 0.161 3.839 18 O -0.385 6.385 19 C 0.033 3.967 20 N -0.384 5.384 21 O 0.076 5.924 22 H 0.025 0.975 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 0.051 11.672 11.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.077 3.923 4 C -0.189 4.189 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 C 0.005 3.995 15 N -0.217 5.217 16 C -0.115 4.115 17 C 0.083 3.917 18 O -0.303 6.303 19 C -0.063 4.063 20 N -0.094 5.094 21 O 0.017 5.983 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.239 -0.368 12.222 12.431 hybrid contribution -0.058 0.276 -0.893 0.937 sum 2.181 -0.092 11.329 11.537 Atomic orbital electron populations 1.21676 0.97724 0.98642 1.01096 1.21598 0.94416 0.98475 1.00468 1.18203 0.92962 0.92114 0.89001 1.21846 0.97273 0.99519 1.00301 1.20891 1.31642 1.12057 0.89513 0.92241 1.24852 0.94850 0.94842 0.98754 1.69808 1.36371 1.22618 1.23268 0.86603 0.79282 0.79400 0.82772 1.20758 1.21331 1.19861 1.20962 1.01509 0.98408 0.85792 1.29449 0.87048 0.87044 0.95945 1.71934 1.18914 1.24197 1.06693 1.25188 0.96067 0.93094 0.97183 1.20315 0.92763 0.94734 0.83885 1.87941 1.48221 1.64830 1.29297 1.22777 0.91965 1.01445 0.90124 1.74531 1.06395 1.22743 1.05767 1.85303 1.41770 1.41937 1.29286 0.95578 0.94784 0.91710 0.88602 0.97206 0.97273 0.89720 0.95110 0.92944 0.88920 0.88397 0.90677 0.89959 0.93800 0.93570 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.31 37.16 0.35 -2.36 16 2 C -0.11 -2.51 4.52 -26.73 -0.12 -2.63 16 3 C 0.08 1.77 0.30 -155.66 -0.05 1.72 16 4 C -0.13 -3.08 7.98 37.16 0.30 -2.79 16 5 C -0.50 -12.25 6.75 -34.44 -0.23 -12.49 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 8 N -0.88 -23.02 9.35 55.43 0.52 -22.50 16 9 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C -0.03 -0.54 4.50 -27.89 -0.13 -0.66 16 14 C 0.22 4.41 5.75 -13.05 -0.08 4.33 16 15 N -0.48 -9.63 10.80 -9.87 -0.11 -9.74 16 16 C 0.16 2.90 7.85 -156.38 -1.23 1.67 16 17 C 0.16 2.27 6.56 36.01 0.24 2.50 16 18 O -0.39 -5.47 10.69 -35.23 -0.38 -5.85 16 19 C 0.03 0.30 11.01 101.05 1.11 1.42 16 20 N -0.38 -7.41 12.16 30.90 0.38 -7.03 16 21 O 0.08 1.50 10.70 18.09 0.19 1.69 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.03 0.62 6.43 -51.93 -0.33 0.29 16 24 H 0.06 1.38 7.22 -51.93 -0.37 1.00 16 25 H 0.10 2.42 6.07 -51.93 -0.32 2.10 16 26 H 0.01 0.21 6.75 -51.93 -0.35 -0.14 16 27 H 0.01 0.19 6.68 -51.93 -0.35 -0.16 16 28 H 0.08 2.17 6.07 -51.93 -0.31 1.86 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.09 1.66 6.43 -51.93 -0.33 1.33 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -27.74 301.05 -5.10 -32.84 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.29 Total: -1.18 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 0.07 Total: -7.65 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.79 Total: -39.27 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.18 Total: -4.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.74 -5.10 -32.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233947294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.307 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds