Wall clock time and date at job start Mon Mar 30 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46441 * 2 1 4 4 C 1.53008 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47404 * 299.99818 * 3 2 1 6 6 H 1.07993 * 120.00178 * 120.00501 * 5 3 2 7 7 C 1.37884 * 120.00136 * 300.00571 * 5 3 2 8 8 N 1.31513 * 119.99440 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99969 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46999 * 90.00170 * 9 7 5 11 11 H 1.48507 * 109.47068 * 209.99815 * 9 7 5 12 12 H 1.48497 * 109.47400 * 330.00022 * 9 7 5 13 13 C 1.52996 * 109.47280 * 60.00386 * 3 2 1 14 14 C 1.50691 * 109.47367 * 59.99547 * 13 3 2 15 15 N 1.31138 * 126.55417 * 90.00159 * 14 13 3 16 16 C 1.34495 * 105.61509 * 179.97438 * 15 14 13 17 17 C 1.50700 * 126.28274 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.46823 * 90.00383 * 17 16 15 19 19 C 1.42900 * 114.00043 * 179.97438 * 18 17 16 20 20 N 1.29942 * 107.42747 * 359.97438 * 16 15 14 21 21 O 1.21306 * 110.25137 * 0.02562 * 20 16 15 22 22 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47353 * 299.99597 * 1 2 3 24 24 H 1.08996 * 109.47145 * 60.00189 * 1 2 3 25 25 H 1.08996 * 109.46841 * 240.00297 * 2 1 3 26 26 H 1.08996 * 109.47145 * 119.99810 * 2 1 3 27 27 H 1.09005 * 109.46621 * 299.99831 * 4 3 2 28 28 H 1.08993 * 109.47045 * 59.99547 * 4 3 2 29 29 H 1.09000 * 109.46802 * 180.02562 * 4 3 2 30 30 H 0.97000 * 119.99435 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47188 * 299.99194 * 13 3 2 32 32 H 1.09000 * 109.47308 * 179.97438 * 13 3 2 33 33 H 1.08999 * 109.46936 * 209.99626 * 17 16 15 34 34 H 1.09000 * 109.47331 * 330.00375 * 17 16 15 35 35 H 1.09003 * 109.46863 * 299.99955 * 19 18 17 36 36 H 1.09004 * 109.47449 * 59.99219 * 19 18 17 37 37 H 1.08995 * 109.47493 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 1.5376 2.1530 -1.2305 6 1 0.9167 3.0310 -1.1314 7 6 1.8707 1.6819 -2.4828 8 7 2.6272 0.6129 -2.6034 9 14 1.2474 2.5621 -4.0079 10 1 2.2251 3.6041 -4.4124 11 1 1.0826 1.5827 -5.1121 12 1 -0.0610 3.1991 -3.7120 13 6 1.5299 2.1637 1.2492 14 6 2.0323 1.4534 2.4796 15 7 3.1527 1.6935 3.1173 16 6 3.1788 0.8242 4.1433 17 6 4.2674 0.6979 5.1777 18 8 3.9769 1.5567 6.2823 19 6 4.9525 1.5121 7.3255 20 7 2.0929 0.1135 4.0788 21 8 1.4206 0.4590 3.1300 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.9337 0.9287 0.8892 28 1 3.9329 0.9289 -0.8908 29 1 3.9332 2.4703 -0.0002 30 1 2.8618 0.2818 -3.4844 31 1 0.4399 2.1638 1.2493 32 1 1.8935 3.1913 1.2495 33 1 4.3212 -0.3342 5.5243 34 1 5.2225 0.9834 4.7368 35 1 5.0201 0.4969 7.7165 36 1 5.9221 1.8142 6.9294 37 1 4.6593 2.1907 8.1264 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233947294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:21 Heat of formation + Delta-G solvation = -4.095368 kcal Electronic energy + Delta-G solvation = -19490.642869 eV Core-core repulsion = 16463.873309 eV Total energy + Delta-G solvation = -3026.769560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.58398 -39.09744 -38.80888 -36.68410 -34.39041 -33.02835 -30.96691 -29.67813 -28.44913 -27.17196 -26.87968 -24.55026 -23.94918 -22.75658 -20.49059 -19.24457 -18.37753 -17.69980 -17.38735 -16.85062 -16.62496 -16.57527 -15.66340 -15.20614 -15.05514 -14.25046 -13.95182 -13.86892 -13.44810 -13.32771 -13.31126 -12.87492 -12.71510 -12.66740 -12.43620 -12.27680 -12.21831 -12.11746 -11.98902 -11.75160 -11.27500 -11.15315 -10.84915 -10.75823 -10.49632 -10.28162 -7.93119 -6.07943 0.13032 1.10212 1.50220 1.54237 1.60728 1.90079 2.40096 2.54126 2.97502 3.25616 3.32250 3.90530 4.09642 4.31826 4.41188 4.47573 4.49225 4.55556 4.57322 4.73008 4.82636 4.82878 4.93681 4.96510 5.03678 5.11146 5.27029 5.30635 5.52031 5.69485 5.76614 5.83409 5.98127 6.08801 6.25384 6.46940 6.96480 7.14268 7.58841 9.06543 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.005094 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.380502 B = 5495.449673 C = 5742.622624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.074 3.926 4 C -0.120 4.120 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.943 3.057 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.266 1.266 13 C -0.021 4.021 14 C 0.221 3.779 15 N -0.500 5.500 16 C 0.157 3.843 17 C 0.160 3.840 18 O -0.414 6.414 19 C 0.026 3.974 20 N -0.395 5.395 21 O 0.069 5.931 22 H 0.037 0.963 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.256 0.744 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 0.551 12.816 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.073 3.927 4 C -0.177 4.177 5 C -0.545 4.545 6 H 0.083 0.917 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.771 3.229 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.190 1.190 13 C -0.060 4.060 14 C 0.002 3.998 15 N -0.234 5.234 16 C -0.117 4.117 17 C 0.083 3.917 18 O -0.332 6.332 19 C -0.069 4.069 20 N -0.108 5.108 21 O 0.012 5.988 22 H 0.056 0.944 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.025 0.975 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.958 0.139 13.373 13.516 hybrid contribution 0.090 0.113 -1.169 1.177 sum 2.048 0.251 12.204 12.377 Atomic orbital electron populations 1.21591 0.95887 0.99611 1.01361 1.21460 0.96004 0.98076 0.98757 1.18171 0.92163 0.92379 0.90025 1.21698 0.98269 0.98790 0.98988 1.21171 1.31151 1.12017 0.90155 0.91745 1.25451 0.95227 0.95412 1.01062 1.69953 1.37444 1.23751 1.23309 0.85783 0.78981 0.78200 0.79981 1.21007 1.21907 1.18994 1.20824 1.02551 0.98238 0.84375 1.29409 0.87212 0.87162 0.96054 1.71944 1.19085 1.24957 1.07418 1.25981 0.96465 0.91886 0.97348 1.20528 0.91644 0.96122 0.83452 1.87888 1.50191 1.65051 1.30108 1.23048 0.91631 1.03005 0.89226 1.74518 1.06972 1.23320 1.05950 1.85278 1.42028 1.41950 1.29516 0.94362 0.92841 0.92953 0.91649 0.97465 0.97156 0.92297 0.95424 0.93404 0.87119 0.87659 0.88514 0.88531 0.92123 0.92244 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 9.31 71.98 0.67 -4.30 16 2 C -0.10 -4.68 4.52 30.60 0.14 -4.55 16 3 C 0.07 3.29 0.30 -52.93 -0.02 3.27 16 4 C -0.12 -5.62 7.98 71.98 0.57 -5.04 16 5 C -0.51 -24.29 6.75 25.60 0.17 -24.11 16 6 H 0.06 2.98 7.74 -2.91 -0.02 2.95 16 7 C 0.03 1.39 5.15 84.66 0.44 1.82 16 8 N -0.91 -47.83 9.35 21.45 0.20 -47.63 16 9 Si 0.94 40.55 29.54 68.60 2.03 42.58 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 13 C -0.02 -0.79 4.50 29.84 0.13 -0.66 16 14 C 0.22 8.42 5.75 88.38 0.51 8.92 16 15 N -0.50 -19.33 10.80 -303.18 -3.28 -22.61 16 16 C 0.16 5.54 7.85 138.46 1.09 6.62 16 17 C 0.16 4.19 6.56 71.24 0.47 4.66 16 18 O -0.41 -10.93 10.69 -148.98 -1.59 -12.53 16 19 C 0.03 0.41 11.01 113.37 1.25 1.66 16 20 N -0.40 -14.78 12.16 -60.30 -0.73 -15.51 16 21 O 0.07 2.63 10.70 74.81 0.80 3.43 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 1.85 6.43 -2.39 -0.02 1.83 16 24 H 0.05 2.16 7.22 -2.39 -0.02 2.14 16 25 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 26 H 0.01 0.30 6.75 -2.39 -0.02 0.28 16 27 H 0.01 0.44 6.68 -2.38 -0.02 0.42 16 28 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 31 H 0.11 3.72 6.43 -2.39 -0.02 3.70 16 32 H 0.11 3.78 8.14 -2.39 -0.02 3.77 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -58.23 301.05 3.91 -54.32 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.06 Total: 9.65 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 5.42 Total: -11.70 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.81 Total: -85.75 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.79 Total: -9.10 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -58.23 3.91 -54.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233947294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.221 kcal (2) G-P(sol) polarization free energy of solvation -58.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds