Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47122 * 2 1 4 4 H 1.08994 * 109.47035 * 54.69526 * 3 2 1 5 5 O 1.42899 * 109.47089 * 294.69388 * 3 2 1 6 6 C 1.42900 * 114.00189 * 152.27310 * 5 3 2 7 7 C 1.50705 * 109.47199 * 174.69723 * 3 2 1 8 8 N 1.29946 * 126.28855 * 74.97167 * 7 3 2 9 9 O 1.21304 * 110.24902 * 179.73017 * 8 7 3 10 10 C 1.33649 * 109.81112 * 0.46712 * 9 8 7 11 11 C 1.50698 * 126.55174 * 179.80419 * 10 9 8 12 12 C 1.52999 * 109.47080 * 269.69252 * 11 10 9 13 13 H 1.09009 * 109.46747 * 304.99362 * 12 11 10 14 14 C 1.52993 * 109.47433 * 64.99423 * 12 11 10 15 15 C 1.50701 * 109.46853 * 185.00294 * 12 11 10 16 16 H 1.07994 * 120.00035 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99748 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99854 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00129 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46815 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46876 * 119.99671 * 19 17 15 22 22 H 1.48497 * 109.47374 * 239.99893 * 19 17 15 23 23 N 1.31130 * 106.89522 * 359.53889 * 10 9 8 24 24 H 1.09006 * 109.46959 * 65.19494 * 1 2 3 25 25 H 1.09002 * 109.47115 * 185.19508 * 1 2 3 26 26 H 1.08996 * 109.47456 * 305.19244 * 1 2 3 27 27 H 1.08997 * 109.47591 * 239.99530 * 2 1 3 28 28 H 1.09002 * 109.46993 * 119.99673 * 2 1 3 29 29 H 1.08995 * 109.46802 * 300.36922 * 6 5 3 30 30 H 1.08998 * 109.47261 * 60.37041 * 6 5 3 31 31 H 1.08996 * 109.47005 * 180.37112 * 6 5 3 32 32 H 1.09001 * 109.46950 * 149.68463 * 11 10 9 33 33 H 1.08998 * 109.47251 * 29.68866 * 11 10 9 34 34 H 1.08994 * 109.47727 * 300.00534 * 14 12 11 35 35 H 1.08998 * 109.46704 * 60.00776 * 14 12 11 36 36 H 1.09004 * 109.47095 * 179.97438 * 14 12 11 37 37 H 0.97005 * 119.99286 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6011 1.9830 0.8386 5 8 1.6681 2.0792 -1.2241 6 6 1.5114 3.4957 -1.1183 7 6 3.5413 1.4446 0.1313 8 7 4.3952 1.1430 -0.8006 9 8 5.5286 1.2465 -0.3809 10 6 5.5043 1.6260 0.9003 11 6 6.6981 1.8629 1.7890 12 6 7.0673 0.5620 2.5046 13 1 6.1966 0.1814 3.0388 14 6 7.5273 -0.4731 1.4761 15 6 8.1815 0.8264 3.4843 16 1 8.5861 1.8225 3.5860 17 6 8.6844 -0.2035 4.2508 18 7 8.1913 -1.4165 4.1272 19 14 10.0659 0.1240 5.4646 20 1 10.4399 1.5602 5.4132 21 1 9.6118 -0.2200 6.8360 22 1 11.2439 -0.7077 5.1101 23 7 4.2433 1.7584 1.2347 24 1 -0.3633 0.4312 -0.9329 25 1 -0.3633 -1.0235 0.0931 26 1 -0.3634 0.5922 0.8398 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.7381 3.7218 -0.3842 30 1 2.4540 3.9429 -0.8027 31 1 1.2226 3.9026 -2.0873 32 1 6.4557 2.6275 2.5270 33 1 7.5411 2.1965 1.1838 34 1 6.7214 -0.6643 0.7676 35 1 8.3980 -0.0926 0.9422 36 1 7.7907 -1.3998 1.9861 37 1 8.5449 -2.1410 4.6668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234048862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = 1.039608 kcal Electronic energy + Delta-G solvation = -18981.361210 eV Core-core repulsion = 15954.814319 eV Total energy + Delta-G solvation = -3026.546891 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.11659 -38.63072 -35.77592 -35.08729 -33.59754 -32.41304 -30.64290 -27.85217 -26.64654 -26.17794 -25.24246 -23.30186 -22.37740 -20.86983 -19.66388 -17.68958 -17.26863 -16.73534 -16.25931 -15.65728 -15.30715 -14.65083 -14.15137 -13.93981 -13.70446 -13.42261 -12.85445 -12.74504 -12.15257 -11.92099 -11.77304 -11.61029 -11.48569 -11.26882 -11.11479 -10.98273 -10.84254 -10.71372 -10.53577 -10.23904 -10.09613 -10.00839 -9.91730 -9.14671 -8.97175 -8.43078 -6.07628 -4.16041 1.63161 2.58211 3.26320 3.33949 3.36533 3.40041 3.44882 3.91420 4.37245 4.54474 4.81270 4.87367 5.13460 5.15737 5.22860 5.24189 5.39015 5.48730 5.57852 5.66190 5.85716 5.94774 5.97737 6.10546 6.16468 6.18450 6.40950 6.52568 6.81558 6.92689 7.02299 7.19068 7.61379 7.82135 8.01834 8.27192 8.62371 8.86738 9.49764 10.98660 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.037140 B = 0.004444 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.726232 B = 6298.891582 C = 6553.758106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.187 3.813 4 H 0.091 0.909 5 O -0.368 6.368 6 C 0.029 3.971 7 C 0.130 3.870 8 N -0.375 5.375 9 O 0.072 5.928 10 C 0.216 3.784 11 C -0.027 4.027 12 C 0.050 3.950 13 H 0.035 0.965 14 C -0.141 4.141 15 C -0.517 4.517 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.494 5.494 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.004 0.996 35 H 0.032 0.968 36 H 0.086 0.914 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 6.120 -7.367 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.127 3.873 4 H 0.109 0.891 5 O -0.284 6.284 6 C -0.068 4.068 7 C -0.144 4.144 8 N -0.084 5.084 9 O 0.013 5.987 10 C -0.003 4.003 11 C -0.066 4.066 12 C 0.030 3.970 13 H 0.053 0.947 14 C -0.199 4.199 15 C -0.555 4.555 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.229 5.229 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.023 0.977 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.168 5.708 -8.025 15.653 hybrid contribution 1.042 0.270 0.959 1.441 sum -11.125 5.977 -7.066 14.472 Atomic orbital electron populations 1.21701 0.94342 1.02002 1.02278 1.21609 0.96943 0.93061 1.03835 1.20278 0.82677 0.96040 0.88273 0.89101 1.87991 1.88514 1.20173 1.31764 1.22842 1.00082 0.81246 1.02614 1.26365 1.00470 1.01296 0.86275 1.74562 0.90021 1.20464 1.23377 1.85321 1.24272 1.62404 1.26658 1.29550 0.96206 0.91011 0.83498 1.20851 0.87740 1.03652 0.94355 1.18745 0.97375 0.87810 0.93023 0.94725 1.21885 0.97496 1.03399 0.97105 1.21059 1.18343 0.95392 1.20715 0.92053 1.24953 0.96876 0.95041 0.96981 1.69909 1.42071 1.00335 1.40188 0.86479 0.81846 0.78427 0.80905 1.19641 1.20999 1.20980 1.71898 1.01780 1.22999 1.26210 0.91928 0.92181 0.92654 0.90452 0.89927 0.93546 0.94185 0.89305 0.88262 0.89201 0.97703 0.94893 0.89522 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.76 37.15 0.36 -1.07 16 2 C -0.12 -1.48 5.62 -26.73 -0.15 -1.63 16 3 C 0.19 2.67 2.65 -27.88 -0.07 2.59 16 4 H 0.09 1.16 7.81 -51.93 -0.41 0.76 16 5 O -0.37 -5.07 9.98 -35.23 -0.35 -5.42 16 6 C 0.03 0.31 10.80 101.05 1.09 1.40 16 7 C 0.13 2.33 6.99 -156.37 -1.09 1.23 16 8 N -0.37 -7.22 12.16 30.90 0.38 -6.84 16 9 O 0.07 1.40 10.77 18.08 0.19 1.59 16 10 C 0.22 4.20 6.91 -13.05 -0.09 4.11 16 11 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 12 C 0.05 1.19 2.29 -91.78 -0.21 0.98 16 13 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 14 C -0.14 -3.33 8.78 37.15 0.33 -3.00 16 15 C -0.52 -13.33 8.56 -34.44 -0.29 -13.62 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.70 11.32 55.43 0.63 -24.07 16 19 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.49 -9.59 11.55 -9.86 -0.11 -9.70 16 24 H 0.06 0.61 7.97 -51.93 -0.41 0.19 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.00 0.09 6.94 -51.93 -0.36 -0.27 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -29.06 313.88 -5.61 -34.67 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.68 Total: -2.29 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.37 Total: -8.09 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.89 Total: -40.61 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.16 Total: -3.83 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.06 -5.61 -34.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234048862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.713 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds