Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47122 * 2 1 4 4 H 1.08994 * 109.47035 * 54.69526 * 3 2 1 5 5 O 1.42899 * 109.47089 * 294.69388 * 3 2 1 6 6 C 1.42900 * 114.00189 * 152.27310 * 5 3 2 7 7 C 1.50705 * 109.47199 * 174.69723 * 3 2 1 8 8 N 1.29946 * 126.28855 * 74.97167 * 7 3 2 9 9 O 1.21304 * 110.24902 * 179.73017 * 8 7 3 10 10 C 1.33649 * 109.81112 * 0.46712 * 9 8 7 11 11 C 1.50698 * 126.55174 * 179.80419 * 10 9 8 12 12 C 1.52999 * 109.47080 * 269.69252 * 11 10 9 13 13 H 1.09009 * 109.46747 * 304.99362 * 12 11 10 14 14 C 1.52993 * 109.47433 * 64.99423 * 12 11 10 15 15 C 1.50701 * 109.46853 * 185.00294 * 12 11 10 16 16 H 1.07994 * 120.00035 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99748 * 179.97438 * 15 12 11 18 18 N 1.31521 * 119.99854 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00129 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46815 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46876 * 119.99671 * 19 17 15 22 22 H 1.48497 * 109.47374 * 239.99893 * 19 17 15 23 23 N 1.31130 * 106.89522 * 359.53889 * 10 9 8 24 24 H 1.09006 * 109.46959 * 65.19494 * 1 2 3 25 25 H 1.09002 * 109.47115 * 185.19508 * 1 2 3 26 26 H 1.08996 * 109.47456 * 305.19244 * 1 2 3 27 27 H 1.08997 * 109.47591 * 239.99530 * 2 1 3 28 28 H 1.09002 * 109.46993 * 119.99673 * 2 1 3 29 29 H 1.08995 * 109.46802 * 300.36922 * 6 5 3 30 30 H 1.08998 * 109.47261 * 60.37041 * 6 5 3 31 31 H 1.08996 * 109.47005 * 180.37112 * 6 5 3 32 32 H 1.09001 * 109.46950 * 149.68463 * 11 10 9 33 33 H 1.08998 * 109.47251 * 29.68866 * 11 10 9 34 34 H 1.08994 * 109.47727 * 300.00534 * 14 12 11 35 35 H 1.08998 * 109.46704 * 60.00776 * 14 12 11 36 36 H 1.09004 * 109.47095 * 179.97438 * 14 12 11 37 37 H 0.97005 * 119.99286 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6011 1.9830 0.8386 5 8 1.6681 2.0792 -1.2241 6 6 1.5114 3.4957 -1.1183 7 6 3.5413 1.4446 0.1313 8 7 4.3952 1.1430 -0.8006 9 8 5.5286 1.2465 -0.3809 10 6 5.5043 1.6260 0.9003 11 6 6.6981 1.8629 1.7890 12 6 7.0673 0.5620 2.5046 13 1 6.1966 0.1814 3.0388 14 6 7.5273 -0.4731 1.4761 15 6 8.1815 0.8264 3.4843 16 1 8.5861 1.8225 3.5860 17 6 8.6844 -0.2035 4.2508 18 7 8.1913 -1.4165 4.1272 19 14 10.0659 0.1240 5.4646 20 1 10.4399 1.5602 5.4132 21 1 9.6118 -0.2200 6.8360 22 1 11.2439 -0.7077 5.1101 23 7 4.2433 1.7584 1.2347 24 1 -0.3633 0.4312 -0.9329 25 1 -0.3633 -1.0235 0.0931 26 1 -0.3634 0.5922 0.8398 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.7381 3.7218 -0.3842 30 1 2.4540 3.9429 -0.8027 31 1 1.2226 3.9026 -2.0873 32 1 6.4557 2.6275 2.5270 33 1 7.5411 2.1965 1.1838 34 1 6.7214 -0.6643 0.7676 35 1 8.3980 -0.0926 0.9422 36 1 7.7907 -1.3998 1.9861 37 1 8.5449 -2.1410 4.6668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234048862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = -17.757969 kcal Electronic energy + Delta-G solvation = -18982.176334 eV Core-core repulsion = 15954.814319 eV Total energy + Delta-G solvation = -3027.362015 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.60275 -39.68984 -37.48622 -36.58836 -34.76233 -34.04007 -32.35859 -28.85755 -28.33969 -27.24453 -27.16046 -24.75638 -23.60507 -22.27676 -21.31512 -19.21619 -18.70106 -18.23302 -17.75421 -16.85242 -16.56259 -16.29457 -15.59978 -15.21326 -15.01169 -14.67439 -14.57267 -13.75330 -13.57257 -13.47641 -13.10132 -13.06033 -12.84207 -12.66965 -12.53558 -12.46604 -12.22644 -12.14219 -12.10163 -11.84806 -11.74602 -11.66282 -11.10204 -10.92915 -10.76269 -10.45420 -8.08873 -6.23670 0.12660 1.13059 1.46938 1.49515 1.60313 1.87575 2.33386 2.47861 2.69061 3.18185 3.21483 3.73366 3.82922 4.07987 4.29400 4.35568 4.38772 4.42756 4.45682 4.49670 4.63549 4.72097 4.78493 4.81498 4.89297 5.01580 5.04197 5.08132 5.09855 5.30838 5.34611 5.60986 5.84380 5.93325 6.04422 6.28239 6.87492 7.13714 7.46016 8.97284 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.037140 B = 0.004444 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.726232 B = 6298.891582 C = 6553.758106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.186 3.814 4 H 0.108 0.892 5 O -0.379 6.379 6 C 0.022 3.978 7 C 0.134 3.866 8 N -0.391 5.391 9 O 0.064 5.936 10 C 0.212 3.788 11 C -0.016 4.016 12 C 0.050 3.950 13 H -0.003 1.003 14 C -0.130 4.130 15 C -0.528 4.528 16 H 0.072 0.928 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.960 3.040 20 H -0.259 1.259 21 H -0.286 1.286 22 H -0.284 1.284 23 N -0.506 5.506 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.025 0.975 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.009 0.991 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 7.461 -7.412 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.126 3.874 4 H 0.126 0.874 5 O -0.296 6.296 6 C -0.074 4.074 7 C -0.140 4.140 8 N -0.102 5.102 9 O 0.008 5.992 10 C -0.007 4.007 11 C -0.055 4.055 12 C 0.030 3.970 13 H 0.016 0.984 14 C -0.188 4.188 15 C -0.566 4.566 16 H 0.091 0.909 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.786 3.214 20 H -0.183 1.183 21 H -0.212 1.212 22 H -0.210 1.210 23 N -0.241 5.241 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.662 7.069 -8.081 16.601 hybrid contribution 1.134 -0.134 0.935 1.476 sum -11.528 6.935 -7.146 15.234 Atomic orbital electron populations 1.21659 0.91798 1.03102 1.02962 1.21614 0.99096 0.91942 1.02712 1.20544 0.80443 0.97238 0.89217 0.87447 1.87982 1.88201 1.21842 1.31580 1.23067 1.00119 0.79570 1.04600 1.27108 1.02002 0.99545 0.85318 1.74551 0.90153 1.21504 1.24031 1.85300 1.24600 1.62652 1.26631 1.29523 0.96346 0.91185 0.83660 1.20664 0.88648 1.01488 0.94676 1.18609 0.95524 0.89851 0.92976 0.98435 1.21723 0.98050 1.02094 0.96908 1.21464 1.18490 0.95793 1.20805 0.90948 1.25772 0.99221 0.94868 0.98833 1.70056 1.43533 1.01218 1.41219 0.85472 0.78823 0.78805 0.78341 1.18268 1.21193 1.20974 1.71909 1.02001 1.23337 1.26902 0.91641 0.91022 0.91408 0.91821 0.90827 0.91257 0.95628 0.87266 0.87061 0.86908 0.97152 0.93766 0.92460 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.76 71.98 0.70 -1.73 16 2 C -0.12 -2.83 5.62 30.59 0.17 -2.66 16 3 C 0.19 5.06 2.65 29.85 0.08 5.14 16 4 H 0.11 2.54 7.81 -2.39 -0.02 2.52 16 5 O -0.38 -9.85 9.98 -148.98 -1.49 -11.34 16 6 C 0.02 0.43 10.80 113.37 1.22 1.65 16 7 C 0.13 4.74 6.99 138.46 0.97 5.70 16 8 N -0.39 -14.94 12.16 -60.30 -0.73 -15.68 16 9 O 0.06 2.46 10.77 74.77 0.81 3.27 16 10 C 0.21 8.12 6.91 88.38 0.61 8.74 16 11 C -0.02 -0.60 5.26 29.85 0.16 -0.44 16 12 C 0.05 2.39 2.29 -11.54 -0.03 2.36 16 13 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 14 C -0.13 -6.18 8.78 71.98 0.63 -5.55 16 15 C -0.53 -26.89 8.56 25.60 0.22 -26.67 16 16 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 17 C 0.01 0.62 5.30 84.65 0.45 1.07 16 18 N -0.92 -52.09 11.32 21.45 0.24 -51.85 16 19 Si 0.96 41.58 29.54 68.60 2.03 43.60 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 N -0.51 -19.39 11.55 -303.18 -3.50 -22.89 16 24 H 0.06 1.13 7.97 -2.38 -0.02 1.11 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.02 0.56 8.11 -2.39 -0.02 0.54 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 33 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.01 0.44 6.94 -2.39 -0.02 0.42 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 3.07 6.07 -2.38 -0.01 3.05 16 37 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -61.87 313.88 3.59 -58.29 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.05 Total: 8.98 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 5.19 Total: -12.38 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -3.99 Total: -90.42 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.68 Total: -8.07 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -61.87 3.59 -58.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234048862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.527 kcal (2) G-P(sol) polarization free energy of solvation -61.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds