Wall clock time and date at job start Mon Mar 30 2020 06:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47440 * 2 1 4 4 H 1.09000 * 109.46967 * 54.99528 * 3 2 1 5 5 O 1.42904 * 109.46539 * 295.00101 * 3 2 1 6 6 C 1.42900 * 113.99758 * 149.99687 * 5 3 2 7 7 C 1.50699 * 109.47264 * 175.00113 * 3 2 1 8 8 N 1.29950 * 126.28648 * 75.02875 * 7 3 2 9 9 O 1.21302 * 110.24922 * 179.97438 * 8 7 3 10 10 C 1.33643 * 109.80919 * 359.97438 * 9 8 7 11 11 C 1.50702 * 126.54819 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46986 * 269.97595 * 11 10 9 13 13 H 1.09000 * 109.47347 * 55.00313 * 12 11 10 14 14 C 1.52999 * 109.47510 * 295.00003 * 12 11 10 15 15 C 1.50708 * 109.47070 * 175.00002 * 12 11 10 16 16 H 1.07996 * 119.99426 * 35.01206 * 15 12 11 17 17 C 1.37873 * 119.99995 * 215.01232 * 15 12 11 18 18 N 1.31517 * 120.00160 * 184.87755 * 17 15 12 19 19 Si 1.86800 * 120.00081 * 4.88255 * 17 15 12 20 20 H 1.48501 * 109.47236 * 84.75912 * 19 17 15 21 21 H 1.48495 * 109.47227 * 204.76070 * 19 17 15 22 22 H 1.48502 * 109.46905 * 324.75983 * 19 17 15 23 23 N 1.31129 * 106.90247 * 359.77148 * 10 9 8 24 24 H 1.09000 * 109.46877 * 299.99727 * 1 2 3 25 25 H 1.09000 * 109.47572 * 60.00167 * 1 2 3 26 26 H 1.09010 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47126 * 239.99531 * 2 1 3 28 28 H 1.09000 * 109.47572 * 119.99833 * 2 1 3 29 29 H 1.09005 * 109.47272 * 179.97438 * 6 5 3 30 30 H 1.08995 * 109.47312 * 300.00390 * 6 5 3 31 31 H 1.09007 * 109.47146 * 60.00299 * 6 5 3 32 32 H 1.08994 * 109.47228 * 29.97746 * 11 10 9 33 33 H 1.08996 * 109.46926 * 149.98172 * 11 10 9 34 34 H 1.09001 * 109.46741 * 55.27011 * 14 12 11 35 35 H 1.08998 * 109.47243 * 175.27392 * 14 12 11 36 36 H 1.09005 * 109.47112 * 295.28016 * 14 12 11 37 37 H 0.96993 * 120.00117 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 1.4558 3.4902 -1.1004 7 6 3.5419 1.4442 0.1238 8 7 4.3912 1.1453 -0.8132 9 8 5.5266 1.2430 -0.3976 10 6 5.5088 1.6258 0.8827 11 6 6.7071 1.8622 1.7654 12 6 7.0809 0.5605 2.4773 13 1 7.2336 -0.2266 1.7389 14 6 5.9518 0.1563 3.4274 15 6 8.3502 0.7645 3.2637 16 1 8.5460 1.7161 3.7354 17 6 9.2614 -0.2636 3.3809 18 7 10.3219 -0.1185 4.1451 19 14 8.9897 -1.8626 2.4541 20 1 9.5221 -1.7315 1.0741 21 1 9.6948 -2.9663 3.1539 22 1 7.5361 -2.1611 2.3976 23 7 4.2496 1.7618 1.2225 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.1722 3.9003 -2.0697 30 1 0.6618 3.6807 -0.3784 31 1 2.3769 3.9644 -0.7611 32 1 7.5466 2.1972 1.1563 33 1 6.4680 2.6255 2.5059 34 1 5.0160 0.0905 2.8723 35 1 6.1799 -0.8127 3.8714 36 1 5.8550 0.9033 4.2153 37 1 10.9626 -0.8419 4.2278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234048966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:03 Heat of formation + Delta-G solvation = 2.868202 kcal Electronic energy + Delta-G solvation = -19070.999720 eV Core-core repulsion = 16044.532123 eV Total energy + Delta-G solvation = -3026.467597 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.23771 -38.71164 -36.02546 -35.12236 -33.64186 -32.41730 -31.12031 -27.98520 -27.02985 -26.28170 -25.25596 -23.35919 -22.46096 -20.97556 -19.52050 -17.82108 -17.34333 -17.06203 -16.69290 -15.75422 -15.38781 -14.49956 -14.30929 -14.18901 -13.78894 -13.20244 -12.89854 -12.82910 -12.43522 -12.32801 -12.11931 -11.72764 -11.64278 -11.54031 -11.18548 -11.01561 -10.93604 -10.75567 -10.64401 -10.48222 -10.17488 -9.96354 -9.80988 -9.35575 -9.16217 -8.62249 -6.17235 -4.18464 1.50743 2.46456 3.24557 3.26549 3.33645 3.35758 3.35946 3.82061 4.34902 4.43584 4.72536 4.77715 5.05291 5.08224 5.15834 5.16706 5.30500 5.42489 5.47593 5.57543 5.76399 5.80013 5.87317 5.94624 6.03221 6.08106 6.26958 6.32647 6.50125 6.68082 6.78859 6.85521 7.09342 7.31950 7.62401 8.37965 8.50547 8.85871 9.44625 10.95362 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034312 B = 0.004984 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.854303 B = 5617.065596 C = 5863.203912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.187 3.813 4 H 0.092 0.908 5 O -0.368 6.368 6 C 0.028 3.972 7 C 0.131 3.869 8 N -0.373 5.373 9 O 0.070 5.930 10 C 0.209 3.791 11 C -0.022 4.022 12 C 0.016 3.984 13 H 0.035 0.965 14 C -0.140 4.140 15 C -0.515 4.515 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.895 5.895 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.266 1.266 23 N -0.489 5.489 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.025 0.975 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.744 3.594 -7.978 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.127 3.873 4 H 0.110 0.890 5 O -0.284 6.284 6 C -0.068 4.068 7 C -0.143 4.143 8 N -0.083 5.083 9 O 0.012 5.988 10 C -0.010 4.010 11 C -0.061 4.061 12 C -0.004 4.004 13 H 0.053 0.947 14 C -0.198 4.198 15 C -0.553 4.553 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.700 3.300 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.191 1.191 23 N -0.224 5.224 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.198 3.282 -8.634 19.521 hybrid contribution 0.279 -0.692 -0.117 0.756 sum -16.918 2.590 -8.751 19.223 Atomic orbital electron populations 1.21707 0.94300 1.02119 1.02291 1.21615 0.97011 0.93132 1.03725 1.20261 0.82600 0.96008 0.88455 0.89022 1.87996 1.88102 1.20919 1.31420 1.22862 0.99914 0.81363 1.02682 1.26387 1.00484 1.01248 0.86204 1.74585 0.89910 1.20591 1.23197 1.85314 1.24280 1.62476 1.26739 1.29677 0.96431 0.91426 0.83492 1.20830 0.87644 1.02962 0.94668 1.19189 0.95891 0.90896 0.94409 0.94663 1.22035 0.96929 1.00896 0.99911 1.20817 1.01038 1.01104 1.32305 0.90318 1.24999 0.94772 0.98212 0.94629 1.69883 1.12155 1.33394 1.37756 0.86922 0.78812 0.83717 0.80533 1.19845 1.21390 1.19056 1.71929 1.01570 1.22574 1.26296 0.92633 0.91821 0.92171 0.90486 0.90053 0.89259 0.93504 0.94110 0.88299 0.87917 0.95570 0.93795 0.93072 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.15 0.36 -0.96 16 2 C -0.12 -1.37 5.62 -26.73 -0.15 -1.52 16 3 C 0.19 2.48 2.66 -27.88 -0.07 2.41 16 4 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 5 O -0.37 -4.82 9.87 -35.23 -0.35 -5.16 16 6 C 0.03 0.28 10.81 101.05 1.09 1.38 16 7 C 0.13 2.19 7.06 -156.37 -1.10 1.09 16 8 N -0.37 -6.84 12.16 30.90 0.38 -6.47 16 9 O 0.07 1.30 11.31 18.10 0.20 1.51 16 10 C 0.21 3.79 6.97 -13.06 -0.09 3.70 16 11 C -0.02 -0.40 5.30 -27.88 -0.15 -0.55 16 12 C 0.02 0.36 1.95 -91.77 -0.18 0.18 16 13 H 0.04 0.80 5.30 -51.93 -0.28 0.53 16 14 C -0.14 -2.92 9.06 37.16 0.34 -2.59 16 15 C -0.52 -13.39 8.86 -34.44 -0.31 -13.70 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 17 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 19 Si 0.87 20.88 26.99 -169.99 -4.59 16.29 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.19 6.82 56.52 0.39 -5.81 16 23 N -0.49 -8.74 10.75 -9.87 -0.11 -8.84 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 26 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.03 0.51 6.62 -51.93 -0.34 0.16 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 313.02 15.07 4.72 4.72 Total: -1.00 -29.72 313.02 -4.97 -34.70 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.65 Total: -2.78 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.35 Total: -8.56 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 1.04 Total: -40.71 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.14 Total: -3.66 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.59 Total: 16.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.72 -4.97 -34.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234048966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.568 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds