Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47440 * 2 1 4 4 H 1.09000 * 109.46967 * 54.99528 * 3 2 1 5 5 O 1.42904 * 109.46539 * 295.00101 * 3 2 1 6 6 C 1.42900 * 113.99758 * 149.99687 * 5 3 2 7 7 C 1.50699 * 109.47264 * 175.00113 * 3 2 1 8 8 N 1.29950 * 126.28648 * 75.02875 * 7 3 2 9 9 O 1.21302 * 110.24922 * 179.97438 * 8 7 3 10 10 C 1.33643 * 109.80919 * 359.97438 * 9 8 7 11 11 C 1.50702 * 126.54819 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46986 * 269.97595 * 11 10 9 13 13 H 1.09000 * 109.47347 * 55.00313 * 12 11 10 14 14 C 1.52999 * 109.47510 * 295.00003 * 12 11 10 15 15 C 1.50708 * 109.47070 * 175.00002 * 12 11 10 16 16 H 1.07996 * 119.99426 * 35.01206 * 15 12 11 17 17 C 1.37873 * 119.99995 * 215.01232 * 15 12 11 18 18 N 1.31517 * 120.00160 * 184.87755 * 17 15 12 19 19 Si 1.86800 * 120.00081 * 4.88255 * 17 15 12 20 20 H 1.48501 * 109.47236 * 84.75912 * 19 17 15 21 21 H 1.48495 * 109.47227 * 204.76070 * 19 17 15 22 22 H 1.48502 * 109.46905 * 324.75983 * 19 17 15 23 23 N 1.31129 * 106.90247 * 359.77148 * 10 9 8 24 24 H 1.09000 * 109.46877 * 299.99727 * 1 2 3 25 25 H 1.09000 * 109.47572 * 60.00167 * 1 2 3 26 26 H 1.09010 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47126 * 239.99531 * 2 1 3 28 28 H 1.09000 * 109.47572 * 119.99833 * 2 1 3 29 29 H 1.09005 * 109.47272 * 179.97438 * 6 5 3 30 30 H 1.08995 * 109.47312 * 300.00390 * 6 5 3 31 31 H 1.09007 * 109.47146 * 60.00299 * 6 5 3 32 32 H 1.08994 * 109.47228 * 29.97746 * 11 10 9 33 33 H 1.08996 * 109.46926 * 149.98172 * 11 10 9 34 34 H 1.09001 * 109.46741 * 55.27011 * 14 12 11 35 35 H 1.08998 * 109.47243 * 175.27392 * 14 12 11 36 36 H 1.09005 * 109.47112 * 295.28016 * 14 12 11 37 37 H 0.96993 * 120.00117 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 1.4558 3.4902 -1.1004 7 6 3.5419 1.4442 0.1238 8 7 4.3912 1.1453 -0.8132 9 8 5.5266 1.2430 -0.3976 10 6 5.5088 1.6258 0.8827 11 6 6.7071 1.8622 1.7654 12 6 7.0809 0.5605 2.4773 13 1 7.2336 -0.2266 1.7389 14 6 5.9518 0.1563 3.4274 15 6 8.3502 0.7645 3.2637 16 1 8.5460 1.7161 3.7354 17 6 9.2614 -0.2636 3.3809 18 7 10.3219 -0.1185 4.1451 19 14 8.9897 -1.8626 2.4541 20 1 9.5221 -1.7315 1.0741 21 1 9.6948 -2.9663 3.1539 22 1 7.5361 -2.1611 2.3976 23 7 4.2496 1.7618 1.2225 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.1722 3.9003 -2.0697 30 1 0.6618 3.6807 -0.3784 31 1 2.3769 3.9644 -0.7611 32 1 7.5466 2.1972 1.1563 33 1 6.4680 2.6255 2.5059 34 1 5.0160 0.0905 2.8723 35 1 6.1799 -0.8127 3.8714 36 1 5.8550 0.9033 4.2153 37 1 10.9626 -0.8419 4.2278 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234048966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -16.921693 kcal Electronic energy + Delta-G solvation = -19071.857875 eV Core-core repulsion = 16044.532123 eV Total energy + Delta-G solvation = -3027.325751 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.62535 -39.68669 -37.63264 -36.52634 -34.72913 -34.11326 -32.74762 -28.95641 -28.53873 -27.28704 -27.11189 -24.68063 -23.61446 -22.26100 -21.10908 -19.38716 -18.94939 -18.53129 -17.74599 -16.86070 -16.43597 -16.29523 -15.91777 -15.08840 -14.85580 -14.67925 -14.49171 -14.19161 -14.06244 -13.59298 -13.22005 -13.02684 -12.91121 -12.62607 -12.57569 -12.52533 -12.26169 -12.12575 -12.02192 -11.81275 -11.75265 -11.62418 -11.13603 -11.06771 -10.86078 -10.67207 -8.27843 -6.31730 0.10327 1.11850 1.36009 1.39394 1.46720 1.84476 2.32405 2.35396 2.69330 3.08855 3.17042 3.73085 3.83720 4.06708 4.20619 4.29712 4.35417 4.39535 4.44315 4.46219 4.57222 4.70646 4.72845 4.79118 4.85698 4.93718 4.95575 5.03612 5.08785 5.13160 5.35630 5.36547 5.59305 5.67160 5.94174 6.29296 6.75970 7.12154 7.34438 8.88120 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.034312 B = 0.004984 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.854303 B = 5617.065596 C = 5863.203912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.109 0.891 5 O -0.381 6.381 6 C 0.022 3.978 7 C 0.136 3.864 8 N -0.391 5.391 9 O 0.060 5.940 10 C 0.207 3.793 11 C -0.013 4.013 12 C 0.015 3.985 13 H 0.031 0.969 14 C -0.133 4.133 15 C -0.509 4.509 16 H 0.051 0.949 17 C 0.023 3.977 18 N -0.942 5.942 19 Si 0.927 3.073 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.255 1.255 23 N -0.493 5.493 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.053 0.947 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.983 3.474 -8.809 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C 0.124 3.876 4 H 0.127 0.873 5 O -0.298 6.298 6 C -0.074 4.074 7 C -0.138 4.138 8 N -0.102 5.102 9 O 0.005 5.995 10 C -0.012 4.012 11 C -0.052 4.052 12 C -0.005 4.005 13 H 0.049 0.951 14 C -0.190 4.190 15 C -0.547 4.547 16 H 0.069 0.931 17 C -0.175 4.175 18 N -0.582 5.582 19 Si 0.752 3.248 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.179 1.179 23 N -0.228 5.228 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.443 3.173 -9.480 21.862 hybrid contribution 0.914 -0.545 0.143 1.074 sum -18.529 2.628 -9.336 20.914 Atomic orbital electron populations 1.21668 0.92037 1.03091 1.02904 1.21624 0.98920 0.91954 1.02845 1.20547 0.80468 0.97256 0.89294 0.87288 1.87987 1.87856 1.22477 1.31477 1.23070 1.00033 0.79772 1.04481 1.27103 1.01919 0.99467 0.85305 1.74590 0.90042 1.21687 1.23898 1.85302 1.24640 1.62752 1.26817 1.29506 0.96458 0.91712 0.83566 1.20595 0.88407 1.01224 0.94999 1.19117 0.94463 0.92667 0.94299 0.95094 1.21916 0.96971 1.00393 0.99756 1.21053 1.02336 0.99685 1.31602 0.93066 1.25729 0.94684 1.01514 0.95555 1.70010 1.13576 1.34636 1.39994 0.86036 0.79227 0.79958 0.79541 1.18965 1.21508 1.17891 1.71943 1.01497 1.22589 1.26763 0.91361 0.91820 0.91068 0.91921 0.90376 0.87503 0.91199 0.95480 0.87206 0.86818 0.94176 0.94765 0.92787 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.81 71.98 0.71 -1.44 16 2 C -0.12 -2.47 5.62 30.59 0.17 -2.30 16 3 C 0.18 4.50 2.66 29.85 0.08 4.58 16 4 H 0.11 2.26 7.79 -2.39 -0.02 2.24 16 5 O -0.38 -9.17 9.87 -148.98 -1.47 -10.64 16 6 C 0.02 0.39 10.81 113.37 1.23 1.62 16 7 C 0.14 4.33 7.06 138.46 0.98 5.31 16 8 N -0.39 -13.82 12.16 -60.31 -0.73 -14.56 16 9 O 0.06 2.17 11.31 74.83 0.85 3.01 16 10 C 0.21 7.19 6.97 88.38 0.62 7.80 16 11 C -0.01 -0.46 5.30 29.85 0.16 -0.31 16 12 C 0.01 0.63 1.95 -11.54 -0.02 0.60 16 13 H 0.03 1.35 5.30 -2.39 -0.01 1.34 16 14 C -0.13 -5.33 9.06 71.98 0.65 -4.68 16 15 C -0.51 -26.50 8.86 25.60 0.23 -26.27 16 16 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 17 C 0.02 1.28 5.47 84.65 0.46 1.74 16 18 N -0.94 -56.09 13.96 21.45 0.30 -55.79 16 19 Si 0.93 42.67 26.99 68.60 1.85 44.52 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.25 -11.16 6.82 99.48 0.68 -10.48 16 23 N -0.49 -16.66 10.75 -303.19 -3.26 -19.92 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.99 7.82 -2.39 -0.02 0.97 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.03 0.54 8.14 -2.38 -0.02 0.53 16 32 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 33 H 0.11 3.75 8.14 -2.39 -0.02 3.74 16 34 H 0.04 1.48 6.62 -2.39 -0.02 1.47 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -62.86 313.02 3.81 -59.06 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 5.25 Total: -13.33 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -3.69 Total: -90.27 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.62 Total: -7.63 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.85 Total: 44.52 kcal Total: -62.86 3.81 -59.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234048966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.135 kcal (2) G-P(sol) polarization free energy of solvation -62.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds