Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 O 1.42899 * 109.47478 * 295.00066 * 3 2 1 6 6 C 1.42895 * 114.00431 * 149.99361 * 5 3 2 7 7 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 8 8 N 1.29947 * 126.28425 * 75.02763 * 7 3 2 9 9 O 1.21307 * 110.24781 * 179.97438 * 8 7 3 10 10 C 1.33632 * 109.81167 * 359.97438 * 9 8 7 11 11 C 1.50708 * 126.55053 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47097 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47358 * 60.01782 * 11 10 9 14 14 C 1.53009 * 109.46574 * 300.01836 * 11 10 9 15 15 C 1.50699 * 109.46750 * 185.00034 * 14 11 10 16 16 H 1.07998 * 120.00194 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99672 * 180.02562 * 15 14 11 18 18 N 1.31521 * 119.99855 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00225 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47168 * 90.00003 * 19 17 15 21 21 H 1.48507 * 109.47145 * 210.00126 * 19 17 15 22 22 H 1.48502 * 109.47146 * 329.99984 * 19 17 15 23 23 N 1.31130 * 106.89964 * 359.76625 * 10 9 8 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09004 * 109.46966 * 60.00146 * 6 5 3 30 30 H 1.09002 * 109.47388 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47561 * 300.00634 * 6 5 3 32 32 H 1.09002 * 109.47389 * 300.00277 * 13 11 10 33 33 H 1.08995 * 109.46928 * 60.00500 * 13 11 10 34 34 H 1.09000 * 109.47089 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47285 * 305.00169 * 14 11 10 36 36 H 1.08996 * 109.46681 * 65.00114 * 14 11 10 37 37 H 0.96991 * 120.00158 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 1.4560 3.4902 -1.1002 7 6 3.5419 1.4442 0.1239 8 7 4.3912 1.1452 -0.8131 9 8 5.5266 1.2430 -0.3975 10 6 5.5089 1.6258 0.8827 11 6 6.7072 1.8623 1.7655 12 1 6.3733 2.1658 2.7577 13 6 7.5768 2.9660 1.1602 14 6 7.5229 0.5723 1.8743 15 6 8.6513 0.7726 2.8528 16 1 8.7742 1.7245 3.3479 17 6 9.5268 -0.2595 3.1160 18 7 10.5114 -0.0849 3.9704 19 14 9.3147 -1.9057 2.2592 20 1 10.0856 -1.9061 0.9900 21 1 9.8135 -2.9910 3.1417 22 1 7.8764 -2.1289 1.9648 23 7 4.2497 1.7619 1.2225 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.3770 3.9643 -0.7608 30 1 1.1716 3.9003 -2.0693 31 1 0.6619 3.6808 -0.3783 32 1 7.9107 2.6624 0.1679 33 1 6.9957 3.8849 1.0827 34 1 8.4437 3.1366 1.7984 35 1 6.8796 -0.2360 2.2219 36 1 7.9309 0.3170 0.8964 37 1 11.1275 -0.8107 4.1553 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234049235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = 1.859598 kcal Electronic energy + Delta-G solvation = -18942.347911 eV Core-core repulsion = 15915.836578 eV Total energy + Delta-G solvation = -3026.511333 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.27146 -38.73213 -36.05834 -35.27225 -33.64592 -32.49466 -30.99278 -27.95942 -27.74075 -26.30648 -24.63450 -23.35771 -22.51819 -21.39438 -19.60239 -17.72063 -17.32175 -17.06123 -16.62368 -15.77547 -15.40316 -14.76832 -14.26112 -14.11203 -13.81457 -13.62734 -12.92783 -12.83445 -12.31263 -12.19584 -12.09281 -11.77607 -11.58913 -11.54106 -11.25084 -11.18142 -10.98610 -10.93686 -10.71865 -10.30758 -10.23138 -10.15568 -9.91007 -9.43315 -9.31442 -8.63192 -6.13926 -4.14076 1.48158 2.42354 3.23048 3.26901 3.32963 3.34907 3.38397 3.78216 4.37556 4.38582 4.69720 4.74952 5.03279 5.06772 5.15624 5.19229 5.28497 5.38317 5.44450 5.55721 5.60911 5.69083 5.74226 5.84270 5.87985 6.06572 6.13387 6.18516 6.43087 6.48420 6.78590 6.83530 6.99218 7.13305 7.60934 8.38002 8.47349 8.87840 9.46940 10.98463 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.004906 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.687349 B = 5706.028606 C = 6199.100201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.187 3.813 4 H 0.092 0.908 5 O -0.367 6.367 6 C 0.028 3.972 7 C 0.130 3.870 8 N -0.372 5.372 9 O 0.077 5.923 10 C 0.213 3.787 11 C 0.009 3.991 12 H 0.112 0.888 13 C -0.137 4.137 14 C -0.008 4.008 15 C -0.521 4.521 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.267 1.267 23 N -0.495 5.495 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.959 4.362 -7.825 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.127 3.873 4 H 0.110 0.890 5 O -0.284 6.284 6 C -0.068 4.068 7 C -0.144 4.144 8 N -0.081 5.081 9 O 0.018 5.982 10 C -0.007 4.007 11 C -0.011 4.011 12 H 0.130 0.870 13 C -0.195 4.195 14 C -0.046 4.046 15 C -0.559 4.559 16 H 0.098 0.902 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.191 1.191 23 N -0.229 5.229 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.449 4.044 -8.469 19.813 hybrid contribution 0.269 -0.737 -0.074 0.788 sum -17.181 3.307 -8.544 19.471 Atomic orbital electron populations 1.21708 0.94264 1.02140 1.02307 1.21618 0.97040 0.93092 1.03749 1.20265 0.82499 0.96056 0.88502 0.89007 1.87995 1.88083 1.20935 1.31377 1.22865 0.99914 0.81343 1.02722 1.26383 1.00526 1.01293 0.86162 1.74604 0.89908 1.20366 1.23177 1.85304 1.24136 1.62108 1.26625 1.29647 0.96046 0.91221 0.83766 1.20137 0.86204 1.00219 0.94569 0.87023 1.21801 1.00204 0.95531 1.01951 1.19722 0.95509 0.91003 0.98378 1.20914 1.09995 1.00814 1.24171 0.90190 1.24933 0.94789 0.98538 0.94638 1.69886 1.16183 1.33041 1.34393 0.86863 0.79064 0.84068 0.79870 1.19983 1.21190 1.19132 1.71909 1.01591 1.22678 1.26710 0.91804 0.92627 0.92145 0.90056 0.90440 0.94108 0.89216 0.93492 0.92344 0.93873 0.89081 0.95999 0.95759 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.81 37.16 0.36 -0.94 16 2 C -0.12 -1.36 5.62 -26.74 -0.15 -1.51 16 3 C 0.19 2.48 2.66 -27.89 -0.07 2.40 16 4 H 0.09 1.08 7.79 -51.93 -0.40 0.67 16 5 O -0.37 -4.80 9.87 -35.23 -0.35 -5.15 16 6 C 0.03 0.28 10.81 101.05 1.09 1.37 16 7 C 0.13 2.21 7.06 -156.38 -1.10 1.10 16 8 N -0.37 -6.89 12.16 30.90 0.38 -6.52 16 9 O 0.08 1.46 11.31 18.13 0.20 1.66 16 10 C 0.21 3.96 7.02 -13.05 -0.09 3.86 16 11 C 0.01 0.17 2.81 -91.77 -0.26 -0.09 16 12 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 13 C -0.14 -2.29 8.99 37.15 0.33 -1.96 16 14 C -0.01 -0.18 3.50 -27.88 -0.10 -0.27 16 15 C -0.52 -13.71 8.96 -34.44 -0.31 -14.01 16 16 H 0.08 2.20 7.30 -52.49 -0.38 1.82 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -26.39 13.96 55.43 0.77 -25.62 16 19 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 N -0.49 -9.00 11.55 -9.87 -0.11 -9.11 16 24 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.62 6.95 -51.93 -0.36 1.25 16 35 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 36 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -30.02 314.06 -5.15 -35.17 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.71 Total: -3.44 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.39 Total: -8.11 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.04 Total: -41.25 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.14 Total: -3.49 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.02 -5.15 -35.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234049235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.029 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds