Wall clock time and date at job start Mon Mar 30 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 O 1.42899 * 109.47478 * 295.00066 * 3 2 1 6 6 C 1.42895 * 114.00431 * 149.99361 * 5 3 2 7 7 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 8 8 N 1.29947 * 126.28425 * 75.02763 * 7 3 2 9 9 O 1.21307 * 110.24781 * 179.97438 * 8 7 3 10 10 C 1.33632 * 109.81167 * 359.97438 * 9 8 7 11 11 C 1.50708 * 126.55053 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47097 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47358 * 60.01782 * 11 10 9 14 14 C 1.53009 * 109.46574 * 300.01836 * 11 10 9 15 15 C 1.50699 * 109.46750 * 185.00034 * 14 11 10 16 16 H 1.07998 * 120.00194 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99672 * 180.02562 * 15 14 11 18 18 N 1.31521 * 119.99855 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00225 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47168 * 90.00003 * 19 17 15 21 21 H 1.48507 * 109.47145 * 210.00126 * 19 17 15 22 22 H 1.48502 * 109.47146 * 329.99984 * 19 17 15 23 23 N 1.31130 * 106.89964 * 359.76625 * 10 9 8 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 1.09004 * 109.46966 * 60.00146 * 6 5 3 30 30 H 1.09002 * 109.47388 * 180.02562 * 6 5 3 31 31 H 1.08995 * 109.47561 * 300.00634 * 6 5 3 32 32 H 1.09002 * 109.47389 * 300.00277 * 13 11 10 33 33 H 1.08995 * 109.46928 * 60.00500 * 13 11 10 34 34 H 1.09000 * 109.47089 * 180.02562 * 13 11 10 35 35 H 1.08996 * 109.47285 * 305.00169 * 14 11 10 36 36 H 1.08996 * 109.46681 * 65.00114 * 14 11 10 37 37 H 0.96991 * 120.00158 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 1.4560 3.4902 -1.1002 7 6 3.5419 1.4442 0.1239 8 7 4.3912 1.1452 -0.8131 9 8 5.5266 1.2430 -0.3975 10 6 5.5089 1.6258 0.8827 11 6 6.7072 1.8623 1.7655 12 1 6.3733 2.1658 2.7577 13 6 7.5768 2.9660 1.1602 14 6 7.5229 0.5723 1.8743 15 6 8.6513 0.7726 2.8528 16 1 8.7742 1.7245 3.3479 17 6 9.5268 -0.2595 3.1160 18 7 10.5114 -0.0849 3.9704 19 14 9.3147 -1.9057 2.2592 20 1 10.0856 -1.9061 0.9900 21 1 9.8135 -2.9910 3.1417 22 1 7.8764 -2.1289 1.9648 23 7 4.2497 1.7619 1.2225 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.3770 3.9643 -0.7608 30 1 1.1716 3.9003 -2.0693 31 1 0.6619 3.6808 -0.3783 32 1 7.9107 2.6624 0.1679 33 1 6.9957 3.8849 1.0827 34 1 8.4437 3.1366 1.7984 35 1 6.8796 -0.2360 2.2219 36 1 7.9309 0.3170 0.8964 37 1 11.1275 -0.8107 4.1553 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234049235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:13 Heat of formation + Delta-G solvation = -18.362582 kcal Electronic energy + Delta-G solvation = -18943.224811 eV Core-core repulsion = 15915.836578 eV Total energy + Delta-G solvation = -3027.388233 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.67869 -39.71018 -37.63670 -36.64140 -34.74260 -34.30355 -32.48821 -29.56103 -28.85571 -27.21582 -26.19147 -24.71761 -23.94721 -22.62683 -21.02650 -19.20990 -19.07145 -18.46758 -17.74637 -16.89494 -16.50417 -16.31667 -15.97298 -15.34989 -15.02895 -14.73174 -14.56580 -13.97065 -13.81201 -13.52212 -13.20181 -13.09647 -12.97888 -12.69917 -12.63372 -12.53918 -12.23437 -12.18369 -11.95259 -11.90274 -11.78808 -11.73764 -11.35521 -11.10296 -10.90441 -10.74965 -8.26956 -6.30228 0.05212 1.06080 1.36407 1.39309 1.47923 1.77928 2.27330 2.36285 2.65600 3.07839 3.09180 3.67875 3.81698 3.99997 4.10662 4.17579 4.28689 4.32912 4.38779 4.42974 4.51602 4.70002 4.72198 4.77251 4.78350 4.92428 5.00397 5.03049 5.08109 5.17125 5.29933 5.35128 5.44361 5.60268 5.92527 6.26489 6.76280 7.06516 7.33660 8.88378 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.031288 B = 0.004906 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.687349 B = 5706.028606 C = 6199.100201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.110 0.890 5 O -0.380 6.380 6 C 0.022 3.978 7 C 0.137 3.863 8 N -0.389 5.389 9 O 0.066 5.934 10 C 0.210 3.790 11 C 0.017 3.983 12 H 0.113 0.887 13 C -0.131 4.131 14 C -0.004 4.004 15 C -0.517 4.517 16 H 0.057 0.943 17 C 0.018 3.982 18 N -0.942 5.942 19 Si 0.932 3.068 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.258 1.258 23 N -0.500 5.500 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.016 0.984 36 H 0.028 0.972 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.018 4.298 -8.757 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C 0.124 3.876 4 H 0.128 0.872 5 O -0.297 6.297 6 C -0.074 4.074 7 C -0.137 4.137 8 N -0.100 5.100 9 O 0.010 5.990 10 C -0.010 4.010 11 C -0.004 4.004 12 H 0.131 0.869 13 C -0.189 4.189 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.180 4.180 18 N -0.583 5.583 19 Si 0.756 3.244 20 H -0.191 1.191 21 H -0.210 1.210 22 H -0.182 1.182 23 N -0.235 5.235 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.047 0.953 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.506 3.991 -9.416 22.025 hybrid contribution 0.852 -0.622 0.225 1.078 sum -18.654 3.369 -9.191 21.067 Atomic orbital electron populations 1.21669 0.91937 1.03135 1.02941 1.21632 0.98997 0.91867 1.02885 1.20566 0.80248 0.97369 0.89383 0.87206 1.87987 1.87816 1.22507 1.31408 1.23079 1.00039 0.79736 1.04553 1.27135 1.02022 0.99400 0.85182 1.74603 0.90001 1.21515 1.23850 1.85290 1.24574 1.62482 1.26632 1.29468 0.96092 0.91597 0.83831 1.19938 0.86290 0.98993 0.95158 0.86899 1.21746 0.99651 0.95956 1.01577 1.19604 0.94606 0.92794 0.97258 1.21182 1.10637 0.99716 1.23969 0.92480 1.25722 0.94684 1.02164 0.95461 1.70010 1.17523 1.34286 1.36434 0.85937 0.79464 0.79929 0.79040 1.19056 1.21017 1.18194 1.71924 1.01506 1.22797 1.27236 0.91791 0.91322 0.91019 0.90365 0.91873 0.95504 0.87430 0.91138 0.91891 0.91369 0.90457 0.96611 0.95325 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.81 71.98 0.71 -1.41 16 2 C -0.12 -2.48 5.62 30.59 0.17 -2.31 16 3 C 0.18 4.52 2.66 29.85 0.08 4.60 16 4 H 0.11 2.27 7.79 -2.39 -0.02 2.25 16 5 O -0.38 -9.16 9.87 -148.98 -1.47 -10.63 16 6 C 0.02 0.38 10.81 113.37 1.23 1.61 16 7 C 0.14 4.43 7.06 138.46 0.98 5.41 16 8 N -0.39 -13.99 12.16 -60.32 -0.73 -14.72 16 9 O 0.07 2.42 11.31 74.93 0.85 3.27 16 10 C 0.21 7.55 7.02 88.38 0.62 8.17 16 11 C 0.02 0.61 2.81 -11.54 -0.03 0.58 16 12 H 0.11 4.11 8.14 -2.39 -0.02 4.10 16 13 C -0.13 -4.26 8.99 71.98 0.65 -3.62 16 14 C 0.00 -0.19 3.50 29.85 0.10 -0.09 16 15 C -0.52 -27.37 8.96 25.60 0.23 -27.14 16 16 H 0.06 3.22 7.30 -2.91 -0.02 3.19 16 17 C 0.02 0.98 5.47 84.65 0.46 1.45 16 18 N -0.94 -56.33 13.96 21.45 0.30 -56.03 16 19 Si 0.93 43.09 27.47 68.60 1.88 44.97 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.26 -11.45 6.54 99.48 0.65 -10.80 16 23 N -0.50 -17.45 11.55 -303.20 -3.50 -20.96 16 24 H 0.06 0.98 7.82 -2.39 -0.02 0.96 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.73 6.95 -2.39 -0.02 2.71 16 35 H 0.02 0.71 7.20 -2.39 -0.02 0.70 16 36 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -63.58 314.06 3.51 -60.08 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.99 Total: 6.76 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.19 Total: -12.74 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.94 Total: -91.70 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.62 Total: -7.36 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -63.58 3.51 -60.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234049235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.714 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds