Wall clock time and date at job start Mon Mar 30 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.34945 * 126.03962 * 125.00101 * 3 2 1 5 5 C 1.35313 * 107.74543 * 179.97438 * 4 3 2 6 6 C 1.50705 * 126.03476 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46827 * 219.99418 * 6 5 4 8 8 Si 1.63097 * 114.00087 * 150.00032 * 7 6 5 9 9 C 1.86299 * 109.47111 * 59.99900 * 8 7 6 10 10 C 1.86299 * 109.47423 * 180.02562 * 8 7 6 11 11 C 1.86303 * 109.47083 * 300.00137 * 8 7 6 12 12 C 1.50696 * 109.47285 * 99.99999 * 6 5 4 13 13 N 1.27943 * 119.99770 * 235.00009 * 12 6 5 14 14 Si 1.86806 * 120.00434 * 54.99500 * 12 6 5 15 15 H 1.48500 * 109.46751 * 0.02562 * 14 12 6 16 16 H 1.48489 * 109.47069 * 120.00077 * 14 12 6 17 17 H 1.48492 * 109.46978 * 240.00458 * 14 12 6 18 18 C 1.39865 * 107.92444 * 359.97438 * 5 4 3 19 19 N 1.30838 * 108.20161 * 359.74520 * 18 5 4 20 20 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 21 21 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 22 22 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 24 24 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 25 25 H 1.07997 * 126.12194 * 359.95555 * 4 3 2 26 26 H 1.09001 * 109.47237 * 339.99273 * 6 5 4 27 27 H 1.09003 * 109.47085 * 60.00425 * 9 8 7 28 28 H 1.09006 * 109.47387 * 180.02562 * 9 8 7 29 29 H 1.09004 * 109.47192 * 300.00362 * 9 8 7 30 30 H 1.09000 * 109.46898 * 59.99833 * 10 8 7 31 31 H 1.09000 * 109.46818 * 179.97438 * 10 8 7 32 32 H 1.08998 * 109.46676 * 299.99996 * 10 8 7 33 33 H 1.09004 * 109.47004 * 59.99770 * 11 8 7 34 34 H 1.09000 * 109.47397 * 179.97438 * 11 8 7 35 35 H 1.09000 * 109.47186 * 300.00134 * 11 8 7 36 36 H 0.97007 * 120.00253 * 179.97438 * 13 12 6 37 37 H 1.07999 * 125.90205 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9212 0.8938 5 6 3.0721 3.2135 0.5456 6 6 3.9560 4.1995 1.2650 7 8 3.3140 5.4758 1.3022 8 14 3.7002 6.3748 2.6070 9 6 5.5375 6.6828 2.6273 10 6 2.7979 8.0028 2.5287 11 6 3.2060 5.4655 4.1561 12 6 5.2704 4.3195 0.5379 13 7 6.3683 4.1203 1.1640 14 14 5.2970 4.7590 -1.2775 15 1 3.9054 4.9375 -1.7640 16 1 6.0540 6.0219 -1.4700 17 1 5.9527 3.6675 -2.0415 18 6 2.3134 3.4721 -0.6006 19 7 1.6859 2.3729 -0.9320 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 3.3183 1.4129 1.7363 26 1 4.1341 3.8526 2.2829 27 1 5.8267 7.2149 1.7210 28 1 5.7957 7.2833 3.4996 29 1 6.0651 5.7301 2.6733 30 1 1.7230 7.8222 2.5171 31 1 3.0557 8.6034 3.4010 32 1 3.0867 8.5350 1.6224 33 1 3.7336 4.5128 4.2022 34 1 3.4645 6.0661 5.0282 35 1 2.1310 5.2852 4.1443 36 1 7.2145 4.1972 0.6959 37 1 2.2583 4.4151 -1.1242 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234227853.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:36 Heat of formation + Delta-G solvation = 30.318118 kcal Electronic energy + Delta-G solvation = -17537.297149 eV Core-core repulsion = 14861.570578 eV Total energy + Delta-G solvation = -2675.726571 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.22977 -38.82717 -35.78101 -35.26064 -31.78501 -30.85450 -29.41902 -28.43682 -28.26928 -27.02971 -24.66593 -22.20254 -21.75381 -20.56462 -18.25570 -18.07065 -16.84495 -16.38586 -16.09671 -15.77821 -15.28980 -14.71161 -14.47877 -14.19046 -13.97618 -13.72214 -13.64796 -13.58477 -13.17427 -13.14580 -13.07607 -12.98225 -12.94880 -12.85049 -12.33761 -12.30397 -11.87656 -11.78408 -11.60341 -11.20651 -10.60214 -10.37292 -10.33754 -9.95362 -9.35270 0.58588 0.98767 1.12330 1.42602 1.46781 1.62046 1.84405 1.84601 1.95001 2.03350 2.19642 2.60594 3.54024 3.69143 3.99218 4.11659 4.18386 4.31204 4.34328 4.42174 4.68921 4.78580 4.82413 4.82804 4.83331 4.86285 4.88173 4.88832 4.96517 4.99338 5.01422 5.25049 5.46285 5.63390 5.69204 5.70859 5.75088 6.15342 6.76667 6.79336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 N -0.374 5.374 4 C 0.081 3.919 5 C -0.259 4.259 6 C 0.234 3.766 7 O -0.620 6.620 8 Si 1.293 2.707 9 C -0.526 4.526 10 C -0.479 4.479 11 C -0.513 4.513 12 C -0.018 4.018 13 N -0.619 5.619 14 Si 0.931 3.069 15 H -0.215 1.215 16 H -0.250 1.250 17 H -0.262 1.262 18 C 0.061 3.939 19 N -0.334 5.334 20 H 0.054 0.946 21 H 0.048 0.952 22 H 0.094 0.906 23 H 0.129 0.871 24 H 0.089 0.911 25 H 0.210 0.790 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.347 0.653 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -2.874 2.163 3.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.002 3.998 3 N -0.156 5.156 4 C -0.067 4.067 5 C -0.271 4.271 6 C 0.175 3.825 7 O -0.577 6.577 8 Si 1.428 2.572 9 C -0.627 4.627 10 C -0.584 4.584 11 C -0.615 4.615 12 C -0.268 4.268 13 N -0.235 5.235 14 Si 0.749 3.251 15 H -0.137 1.137 16 H -0.174 1.174 17 H -0.186 1.186 18 C -0.125 4.125 19 N -0.155 5.155 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.113 0.887 23 H 0.147 0.853 24 H 0.107 0.893 25 H 0.227 0.773 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.394 -3.661 1.195 3.872 hybrid contribution 1.090 0.820 0.322 1.402 sum 0.696 -2.841 1.517 3.295 Atomic orbital electron populations 1.22010 0.93961 1.03757 1.02171 1.22035 0.95998 0.76069 1.05676 1.49037 1.35100 1.11026 1.20451 1.22853 0.93599 0.94044 0.96235 1.19783 1.09919 0.95101 1.02344 1.18467 0.85024 0.81173 0.97864 1.85393 1.72180 1.32236 1.67907 0.76589 0.63224 0.62166 0.55239 1.27293 1.25505 1.05920 1.03976 1.26446 1.08978 1.18037 1.04957 1.27009 1.05847 1.09441 1.19167 1.30814 0.95936 0.93386 1.06636 1.68071 1.02588 1.09570 1.43240 0.85595 0.83929 0.80464 0.75160 1.13683 1.17418 1.18610 1.24155 0.94798 0.97474 0.96055 1.77359 1.25117 0.97923 1.15134 0.92711 0.93286 0.88719 0.85341 0.89298 0.77314 0.88354 0.92017 0.90994 0.89990 0.90977 0.90086 0.90988 0.90970 0.90700 0.91263 0.83494 0.79175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.50 10.10 71.98 0.73 1.23 16 2 C 0.12 -0.55 7.23 86.38 0.62 0.08 16 3 N -0.37 -0.74 3.68 -348.06 -1.28 -2.02 16 4 C 0.08 -0.08 11.36 83.54 0.95 0.87 16 5 C -0.26 -0.54 4.62 -20.14 -0.09 -0.63 16 6 C 0.23 0.08 2.29 29.10 0.07 0.14 16 7 O -0.62 -0.48 7.69 -148.98 -1.15 -1.63 16 8 Si 1.29 -2.68 12.68 68.60 0.87 -1.81 16 9 C -0.53 -0.06 8.04 113.37 0.91 0.85 16 10 C -0.48 0.42 8.65 113.37 0.98 1.40 16 11 C -0.51 0.80 8.56 113.37 0.97 1.77 16 12 C -0.02 -0.01 3.95 88.67 0.35 0.34 16 13 N -0.62 -0.29 11.80 24.11 0.28 -0.01 16 14 Si 0.93 1.86 27.41 68.60 1.88 3.74 16 15 H -0.22 -0.41 5.01 99.48 0.50 0.09 16 16 H -0.25 -0.68 7.11 99.48 0.71 0.03 16 17 H -0.26 -1.07 7.11 99.48 0.71 -0.37 16 18 C 0.06 0.34 9.81 85.23 0.84 1.18 16 19 N -0.33 -2.64 12.42 -57.03 -0.71 -3.35 16 20 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 21 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 22 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 23 H 0.13 -1.41 8.07 -2.39 -0.02 -1.43 16 24 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 25 H 0.21 -1.86 8.06 -2.91 -0.02 -1.88 16 26 H 0.10 -0.27 6.11 -2.39 -0.01 -0.29 16 27 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 28 H 0.07 -0.04 7.96 -2.38 -0.02 -0.06 16 29 H 0.08 0.10 5.71 -2.38 -0.01 0.09 16 30 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 31 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 32 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 33 H 0.07 -0.15 7.10 -2.38 -0.02 -0.17 16 34 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 35 H 0.07 -0.06 7.96 -2.39 -0.02 -0.08 16 36 H 0.35 -0.72 8.23 -92.70 -0.76 -1.48 16 37 H 0.19 0.74 6.53 -2.91 -0.02 0.72 16 Total: 0.00 -11.35 307.66 7.06 -4.29 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: 0.83 Total: -6.45 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 6.32 Total: 7.22 kcal Atomic # 7 Polarization: -3.67 SS G_CDS: -1.70 Total: -5.37 kcal Atomic # 8 Polarization: -0.48 SS G_CDS: -1.15 Total: -1.63 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.75 Total: 1.93 kcal Total: -11.35 7.06 -4.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234227853.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.611 kcal (2) G-P(sol) polarization free energy of solvation -11.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds