Wall clock time and date at job start Mon Mar 30 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52997 * 109.47264 * 300.00074 * 3 2 1 5 5 C 1.52992 * 109.46980 * 60.00515 * 3 2 1 6 6 C 1.50708 * 109.46840 * 180.02562 * 3 2 1 7 7 N 1.29941 * 126.28546 * 125.03110 * 6 3 2 8 8 O 1.21295 * 110.25238 * 179.97438 * 7 6 3 9 9 C 1.33646 * 109.81180 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.55461 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46915 * 269.97401 * 10 9 8 12 12 H 1.08998 * 109.47270 * 304.99731 * 11 10 9 13 13 C 1.53000 * 109.47209 * 65.00008 * 11 10 9 14 14 C 1.50707 * 109.46780 * 184.99742 * 11 10 9 15 15 H 1.08000 * 119.99840 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99683 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99722 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00175 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47499 * 89.99456 * 18 16 14 20 20 H 1.48500 * 109.46878 * 209.99943 * 18 16 14 21 21 H 1.48507 * 109.46821 * 329.99516 * 18 16 14 22 22 N 1.31130 * 106.89500 * 359.76977 * 9 8 7 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46832 * 60.00108 * 4 3 2 28 28 H 1.09004 * 109.47261 * 300.00089 * 4 3 2 29 29 H 1.09001 * 109.47066 * 299.99861 * 5 3 2 30 30 H 1.08996 * 109.47747 * 59.99527 * 5 3 2 31 31 H 1.09002 * 109.47103 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.46578 * 29.97600 * 10 9 8 33 33 H 1.09000 * 109.46824 * 149.97434 * 10 9 8 34 34 H 1.09007 * 109.47178 * 59.99433 * 13 11 10 35 35 H 1.09001 * 109.47148 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47172 * 299.99963 * 13 11 10 37 37 H 0.96995 * 119.99972 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 -1.2492 5 6 1.5588 2.0647 1.2493 6 6 3.5126 1.1865 -0.0006 7 7 4.3263 1.7253 -0.8585 8 8 5.4734 1.4419 -0.5845 9 6 5.5012 0.6724 0.5079 10 6 6.7277 0.1066 1.1761 11 6 7.0497 -1.2632 0.5753 12 1 6.1751 -1.9090 0.6536 13 6 7.4311 -1.0973 -0.8971 14 6 8.2005 -1.8828 1.3256 15 1 8.6563 -1.3528 2.1488 16 6 8.6708 -3.1268 0.9616 17 7 9.6747 -3.6677 1.6166 18 14 7.8820 -4.0437 -0.4619 19 1 8.5748 -3.6862 -1.7258 20 1 7.9951 -5.5064 -0.2319 21 1 6.4487 -3.6674 -0.5596 22 7 4.2577 0.5085 0.8904 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.0017 3.0608 -1.2490 27 1 0.4721 2.1508 -1.2491 28 1 1.8803 1.5239 -2.1392 29 1 0.4722 2.1507 1.2493 30 1 1.8804 1.5238 2.1392 31 1 2.0025 3.0603 1.2495 32 1 7.5705 0.7797 1.0186 33 1 6.5426 0.0001 2.2450 34 1 8.3057 -0.4515 -0.9754 35 1 7.6609 -2.0731 -1.3250 36 1 6.5988 -0.6491 -1.4397 37 1 10.0058 -4.5427 1.3603 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234576791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:41 Heat of formation + Delta-G solvation = 19.319411 kcal Electronic energy + Delta-G solvation = -19297.500711 eV Core-core repulsion = 16271.746492 eV Total energy + Delta-G solvation = -3025.754219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.26444 -39.17907 -35.97710 -35.29517 -33.22692 -31.97913 -30.82904 -27.86415 -27.40958 -27.02941 -25.14971 -24.11918 -22.58694 -20.43091 -19.55289 -17.81835 -17.67915 -16.68616 -16.21252 -15.85569 -15.39674 -14.87543 -14.12419 -13.77009 -13.64835 -13.41165 -12.87439 -12.77282 -12.52533 -12.26767 -12.25386 -11.97759 -11.80976 -11.66213 -11.46551 -11.20760 -10.93246 -10.71501 -10.54683 -10.36749 -10.04414 -9.84279 -9.61929 -9.27040 -9.12594 -8.59730 -6.12614 -4.13715 1.45457 2.43476 3.21818 3.27059 3.39063 3.40082 3.41549 3.86587 4.33653 4.38474 4.54681 4.83181 5.05147 5.11244 5.20568 5.21625 5.29643 5.32256 5.47542 5.52232 5.58615 5.81063 5.83159 5.91125 5.96321 6.04214 6.24714 6.31852 6.42169 6.59077 6.70922 6.95277 7.01075 7.36239 7.64836 8.40756 8.47829 8.88462 9.48852 10.99937 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.005351 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.862526 B = 5231.533887 C = 5519.747588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.210 3.790 4 C -0.172 4.172 5 C -0.172 4.172 6 C 0.175 3.825 7 N -0.386 5.386 8 O 0.074 5.926 9 C 0.210 3.790 10 C -0.015 4.015 11 C 0.015 3.985 12 H 0.037 0.963 13 C -0.153 4.153 14 C -0.516 4.516 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.896 5.896 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.266 1.266 22 N -0.476 5.476 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.024 0.976 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 11.295 -3.525 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.285 6.285 3 C 0.169 3.831 4 C -0.230 4.230 5 C -0.230 4.230 6 C -0.099 4.099 7 N -0.096 5.096 8 O 0.015 5.985 9 C -0.010 4.010 10 C -0.054 4.054 11 C -0.005 4.005 12 H 0.055 0.945 13 C -0.210 4.210 14 C -0.554 4.554 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.224 1.224 21 H -0.191 1.191 22 N -0.209 5.209 23 H 0.108 0.892 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.556 11.311 -3.904 20.428 hybrid contribution -0.351 -0.520 -0.846 1.054 sum -16.907 10.791 -4.751 20.612 Atomic orbital electron populations 1.22863 0.80745 1.03187 1.00256 1.88089 1.19818 1.25508 1.95042 1.19236 0.83058 0.84628 0.96223 1.22339 1.01830 1.01415 0.97439 1.22361 1.01910 1.00899 0.97834 1.25061 0.98150 0.96610 0.90055 1.74520 0.90062 1.22846 1.22138 1.85295 1.22972 1.51252 1.38963 1.29636 0.97069 0.89425 0.84846 1.20608 0.86973 0.98425 0.99436 1.19213 0.98444 0.90485 0.92396 0.94541 1.22261 0.99913 1.00491 0.98336 1.20836 1.14806 1.02731 1.17044 0.90212 1.24931 0.94428 0.97051 0.96310 1.69875 1.25569 1.17195 1.40756 0.86870 0.80681 0.78162 0.82679 1.20522 1.22384 1.19147 1.71922 1.00515 1.21768 1.26717 0.89200 0.93409 0.93635 0.90648 0.91063 0.91103 0.90963 0.90353 0.91204 0.88513 0.87418 0.92224 0.93903 0.95668 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.21 101.05 1.03 1.28 16 2 O -0.37 -5.42 10.33 -35.23 -0.36 -5.78 16 3 C 0.21 2.89 1.10 -91.77 -0.10 2.79 16 4 C -0.17 -1.92 7.75 37.16 0.29 -1.63 16 5 C -0.17 -1.90 8.23 37.15 0.31 -1.59 16 6 C 0.17 3.04 6.78 -156.37 -1.06 1.98 16 7 N -0.39 -6.81 11.48 30.90 0.35 -6.46 16 8 O 0.07 1.33 10.75 18.09 0.19 1.52 16 9 C 0.21 3.88 6.92 -13.06 -0.09 3.79 16 10 C -0.02 -0.29 5.26 -27.88 -0.15 -0.43 16 11 C 0.01 0.33 1.88 -91.77 -0.17 0.16 16 12 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 13 C -0.15 -3.29 8.49 37.16 0.32 -2.97 16 14 C -0.52 -13.76 9.14 -34.44 -0.31 -14.07 16 15 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.08 2.11 5.45 -17.82 -0.10 2.02 16 17 N -0.90 -26.73 13.96 55.43 0.77 -25.95 16 18 Si 0.89 22.00 24.37 -169.99 -4.14 17.85 16 19 H -0.28 -6.72 6.87 56.52 0.39 -6.33 16 20 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 22 N -0.48 -9.15 11.55 -9.87 -0.11 -9.26 16 23 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.38 6.42 -51.93 -0.33 0.05 16 25 H 0.05 0.36 6.42 -51.93 -0.33 0.03 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.59 6.54 -51.93 -0.34 0.25 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 36 H 0.02 0.49 6.93 -51.93 -0.36 0.13 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -31.23 298.91 -4.07 -35.30 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.23 Total: -3.03 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.04 Total: -8.69 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 1.01 Total: -41.67 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.17 Total: -4.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.23 -4.07 -35.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234576791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.616 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds