Wall clock time and date at job start Mon Mar 30 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52997 * 109.47264 * 300.00074 * 3 2 1 5 5 C 1.52992 * 109.46980 * 60.00515 * 3 2 1 6 6 C 1.50708 * 109.46840 * 180.02562 * 3 2 1 7 7 N 1.29941 * 126.28546 * 125.03110 * 6 3 2 8 8 O 1.21295 * 110.25238 * 179.97438 * 7 6 3 9 9 C 1.33646 * 109.81180 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.55461 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.46915 * 269.97401 * 10 9 8 12 12 H 1.08998 * 109.47270 * 304.99731 * 11 10 9 13 13 C 1.53000 * 109.47209 * 65.00008 * 11 10 9 14 14 C 1.50707 * 109.46780 * 184.99742 * 11 10 9 15 15 H 1.08000 * 119.99840 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99683 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99722 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 120.00175 * 0.02562 * 16 14 11 19 19 H 1.48498 * 109.47499 * 89.99456 * 18 16 14 20 20 H 1.48500 * 109.46878 * 209.99943 * 18 16 14 21 21 H 1.48507 * 109.46821 * 329.99516 * 18 16 14 22 22 N 1.31130 * 106.89500 * 359.76977 * 9 8 7 23 23 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.09002 * 109.47153 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46832 * 60.00108 * 4 3 2 28 28 H 1.09004 * 109.47261 * 300.00089 * 4 3 2 29 29 H 1.09001 * 109.47066 * 299.99861 * 5 3 2 30 30 H 1.08996 * 109.47747 * 59.99527 * 5 3 2 31 31 H 1.09002 * 109.47103 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.46578 * 29.97600 * 10 9 8 33 33 H 1.09000 * 109.46824 * 149.97434 * 10 9 8 34 34 H 1.09007 * 109.47178 * 59.99433 * 13 11 10 35 35 H 1.09001 * 109.47148 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47172 * 299.99963 * 13 11 10 37 37 H 0.96995 * 119.99972 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 -1.2492 5 6 1.5588 2.0647 1.2493 6 6 3.5126 1.1865 -0.0006 7 7 4.3263 1.7253 -0.8585 8 8 5.4734 1.4419 -0.5845 9 6 5.5012 0.6724 0.5079 10 6 6.7277 0.1066 1.1761 11 6 7.0497 -1.2632 0.5753 12 1 6.1751 -1.9090 0.6536 13 6 7.4311 -1.0973 -0.8971 14 6 8.2005 -1.8828 1.3256 15 1 8.6563 -1.3528 2.1488 16 6 8.6708 -3.1268 0.9616 17 7 9.6747 -3.6677 1.6166 18 14 7.8820 -4.0437 -0.4619 19 1 8.5748 -3.6862 -1.7258 20 1 7.9951 -5.5064 -0.2319 21 1 6.4487 -3.6674 -0.5596 22 7 4.2577 0.5085 0.8904 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.0017 3.0608 -1.2490 27 1 0.4721 2.1508 -1.2491 28 1 1.8803 1.5239 -2.1392 29 1 0.4722 2.1507 1.2493 30 1 1.8804 1.5238 2.1392 31 1 2.0025 3.0603 1.2495 32 1 7.5705 0.7797 1.0186 33 1 6.5426 0.0001 2.2450 34 1 8.3057 -0.4515 -0.9754 35 1 7.6609 -2.0731 -1.3250 36 1 6.5988 -0.6491 -1.4397 37 1 10.0058 -4.5427 1.3603 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234576791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:41 Heat of formation + Delta-G solvation = -3.563771 kcal Electronic energy + Delta-G solvation = -19298.493000 eV Core-core repulsion = 16271.746492 eV Total energy + Delta-G solvation = -3026.746508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.64663 -40.14183 -37.65664 -36.68006 -34.69114 -33.64811 -32.26945 -29.03515 -28.30928 -28.19332 -27.13682 -25.39023 -23.97602 -21.93370 -20.94564 -19.22258 -19.07650 -18.54142 -17.34105 -16.89180 -16.81890 -16.26777 -15.64257 -15.45194 -14.83021 -14.58508 -14.29040 -14.22868 -13.83379 -13.49874 -13.40464 -13.08409 -13.07000 -12.97318 -12.82269 -12.50573 -12.44167 -12.29712 -12.05780 -11.84400 -11.80113 -11.43424 -11.13824 -10.91102 -10.72253 -10.65247 -8.29655 -6.32895 0.05731 1.08587 1.29296 1.36896 1.44745 1.80315 2.29981 2.31737 2.71013 3.06616 3.25333 3.61979 3.77112 4.01927 4.16001 4.31421 4.37698 4.41900 4.42785 4.52809 4.54940 4.58988 4.69076 4.77124 4.80377 4.81152 4.84066 4.94478 5.03055 5.07880 5.16564 5.27285 5.56595 5.62600 6.09086 6.26576 6.73838 7.08832 7.32641 8.86158 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.005351 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.862526 B = 5231.533887 C = 5519.747588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.403 6.403 3 C 0.200 3.800 4 C -0.166 4.166 5 C -0.166 4.166 6 C 0.170 3.830 7 N -0.390 5.390 8 O 0.072 5.928 9 C 0.208 3.792 10 C -0.007 4.007 11 C 0.015 3.985 12 H 0.018 0.982 13 C -0.149 4.149 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.024 3.976 17 N -0.941 5.941 18 Si 0.937 3.063 19 H -0.265 1.265 20 H -0.298 1.298 21 H -0.263 1.263 22 N -0.498 5.498 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.040 0.960 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.202 12.537 -4.579 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.323 6.323 3 C 0.159 3.841 4 C -0.223 4.223 5 C -0.224 4.224 6 C -0.103 4.103 7 N -0.100 5.100 8 O 0.015 5.985 9 C -0.011 4.011 10 C -0.045 4.045 11 C -0.005 4.005 12 H 0.037 0.963 13 C -0.206 4.206 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.174 4.174 17 N -0.581 5.581 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.226 1.226 21 H -0.188 1.188 22 N -0.231 5.231 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.595 12.573 -4.971 22.991 hybrid contribution 0.221 -0.864 -0.462 1.005 sum -18.374 11.709 -5.434 22.455 Atomic orbital electron populations 1.23129 0.78299 1.04301 1.02027 1.88026 1.22574 1.26260 1.95411 1.19598 0.80917 0.85041 0.98500 1.22317 1.03902 1.00753 0.95375 1.22343 1.03977 1.00399 0.95689 1.25867 0.99991 0.95417 0.89045 1.74508 0.89969 1.23280 1.22292 1.85279 1.23335 1.51218 1.38705 1.29443 0.96842 0.89762 0.85100 1.20416 0.88063 0.96737 0.99332 1.19084 0.96002 0.92217 0.93194 0.96348 1.22179 1.01121 1.00208 0.97126 1.21126 1.15107 1.02398 1.16246 0.92448 1.25632 0.94967 0.98194 0.98643 1.69991 1.27456 1.17879 1.42772 0.86025 0.80046 0.76797 0.80554 1.19109 1.22629 1.18819 1.71933 1.01048 1.22412 1.27718 0.88603 0.91652 0.91709 0.90286 0.87842 0.92693 0.87762 0.92161 0.90545 0.86229 0.87079 0.90854 0.95161 0.94123 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.21 113.37 1.16 1.45 16 2 O -0.40 -11.24 10.33 -148.98 -1.54 -12.78 16 3 C 0.20 5.11 1.10 -11.54 -0.01 5.10 16 4 C -0.17 -3.25 7.75 71.98 0.56 -2.69 16 5 C -0.17 -3.26 8.23 71.98 0.59 -2.67 16 6 C 0.17 5.71 6.78 138.47 0.94 6.65 16 7 N -0.39 -13.23 11.48 -60.34 -0.69 -13.92 16 8 O 0.07 2.47 10.75 74.81 0.80 3.28 16 9 C 0.21 7.47 6.92 88.38 0.61 8.08 16 10 C -0.01 -0.24 5.26 29.85 0.16 -0.08 16 11 C 0.02 0.67 1.88 -11.54 -0.02 0.65 16 12 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 13 C -0.15 -6.15 8.49 71.98 0.61 -5.54 16 14 C -0.51 -27.31 9.14 25.60 0.23 -27.08 16 15 H 0.06 3.26 7.99 -2.91 -0.02 3.24 16 16 C 0.02 1.34 5.45 84.65 0.46 1.80 16 17 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 18 Si 0.94 45.21 24.37 68.60 1.67 46.88 16 19 H -0.27 -12.13 6.87 99.48 0.68 -11.45 16 20 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 21 H -0.26 -12.44 6.53 99.48 0.65 -11.79 16 22 N -0.50 -18.69 11.55 -303.22 -3.50 -22.20 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 0.83 6.42 -2.39 -0.02 0.81 16 25 H 0.06 0.80 6.42 -2.39 -0.02 0.78 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 1.31 6.54 -2.39 -0.02 1.30 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.10 1.33 6.54 -2.39 -0.02 1.32 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 34 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 35 H 0.03 1.31 3.27 -2.39 -0.01 1.31 16 36 H 0.04 1.53 6.93 -2.39 -0.02 1.51 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -67.17 298.91 3.31 -63.86 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.99 Total: 5.90 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 5.29 Total: -14.34 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -3.90 Total: -92.81 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.73 Total: -9.50 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.67 Total: 46.88 kcal Total: -67.17 3.31 -63.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234576791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.296 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds