Wall clock time and date at job start Mon Mar 30 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99957 * 2 1 4 4 C 1.53008 * 109.46818 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47070 * 179.97438 * 5 4 3 7 7 N 1.29946 * 126.29198 * 270.02327 * 6 5 4 8 8 O 1.21298 * 110.25505 * 179.68388 * 7 6 5 9 9 C 1.33643 * 109.80846 * 0.46943 * 8 7 6 10 10 C 1.50699 * 126.54930 * 179.80105 * 9 8 7 11 11 H 1.09004 * 109.46963 * 179.68504 * 10 9 8 12 12 C 1.53004 * 109.47110 * 59.69075 * 10 9 8 13 13 C 1.52997 * 109.47337 * 299.68812 * 10 9 8 14 14 C 1.50701 * 109.47212 * 184.99952 * 13 10 9 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 10 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 N 1.31130 * 106.89670 * 359.53964 * 9 8 7 23 23 H 1.08996 * 109.47327 * 59.99276 * 1 2 3 24 24 H 1.09002 * 109.47465 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47097 * 299.99849 * 1 2 3 26 26 H 1.09000 * 109.46715 * 60.00838 * 3 2 1 27 27 H 1.08998 * 109.47484 * 300.00335 * 3 2 1 28 28 H 1.08991 * 109.47032 * 60.00050 * 4 3 2 29 29 H 1.09003 * 109.46798 * 299.99479 * 4 3 2 30 30 H 1.09001 * 109.47224 * 59.99529 * 5 4 3 31 31 H 1.08998 * 109.47246 * 299.99765 * 5 4 3 32 32 H 1.09000 * 109.47403 * 59.99699 * 12 10 9 33 33 H 1.09001 * 109.46917 * 180.02562 * 12 10 9 34 34 H 1.09004 * 109.46741 * 299.99564 * 12 10 9 35 35 H 1.09002 * 109.47153 * 64.99954 * 13 10 9 36 36 H 1.09001 * 109.46832 * 305.00144 * 13 10 9 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 0.0000 7 7 6.4267 2.4016 1.0474 8 8 7.5884 2.3036 0.7123 9 6 7.6766 2.3033 -0.6212 10 6 8.9397 2.2034 -1.4370 11 1 8.6897 2.2239 -2.4978 12 6 9.6573 0.8929 -1.1076 13 6 9.8554 3.3835 -1.1059 14 6 11.0619 3.3518 -2.0084 15 1 11.1651 2.5686 -2.7448 16 6 12.0336 4.3234 -1.8946 17 7 11.9077 5.2775 -0.9983 18 14 13.5287 4.2845 -3.0137 19 1 13.4323 3.1185 -3.9284 20 1 13.5824 5.5358 -3.8117 21 1 14.7597 4.1686 -2.1913 22 7 6.4536 2.4009 -1.0841 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8462 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8567 0.6438 -0.8908 29 1 3.8574 0.6435 0.8892 30 1 3.8364 3.1227 0.8904 31 1 3.8359 3.1237 -0.8895 32 1 9.0050 0.0521 -1.3435 33 1 10.5712 0.8209 -1.6973 34 1 9.9074 0.8724 -0.0468 35 1 10.1770 3.3135 -0.0668 36 1 9.3135 4.3172 -1.2564 37 1 12.5915 5.9608 -0.9180 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234605339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:00 Heat of formation + Delta-G solvation = -7.054454 kcal Electronic energy + Delta-G solvation = -18168.514236 eV Core-core repulsion = 15141.616360 eV Total energy + Delta-G solvation = -3026.897876 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.11313 -38.30536 -36.08247 -35.77116 -33.64364 -32.42344 -30.75354 -28.00193 -27.13804 -25.96541 -24.62074 -23.20032 -22.52426 -21.60114 -19.50623 -17.56509 -16.97601 -16.61129 -16.54376 -16.29975 -15.40305 -14.79003 -14.57139 -14.21046 -13.95632 -13.29833 -12.85687 -12.64074 -12.60668 -12.09281 -12.00332 -11.88241 -11.39912 -11.32562 -11.12341 -11.05250 -10.97969 -10.89206 -10.57873 -10.52522 -10.16456 -9.96862 -9.88067 -9.24877 -9.17898 -8.45594 -6.09220 -4.13084 1.61837 2.59057 3.27690 3.34858 3.36946 3.38713 3.43740 3.99401 4.33300 4.42000 4.73338 4.81352 4.96894 5.02116 5.07468 5.20554 5.24615 5.27447 5.34276 5.38925 5.59050 5.73127 5.84061 5.93039 5.96545 6.04501 6.27266 6.35910 6.56580 6.67708 6.83067 6.85347 7.47800 7.55905 7.86480 8.22508 8.60686 8.91562 9.51466 11.02170 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.054530 B = 0.003307 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.351729 B = 8464.868577 C = 8572.753167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.064 3.936 4 C -0.113 4.113 5 C -0.020 4.020 6 C 0.162 3.838 7 N -0.397 5.397 8 O 0.076 5.924 9 C 0.220 3.780 10 C -0.002 4.002 11 H 0.106 0.894 12 C -0.135 4.135 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 N -0.501 5.501 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.374 -7.618 1.580 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.013 4.013 4 C -0.152 4.152 5 C -0.059 4.059 6 C -0.111 4.111 7 N -0.107 5.107 8 O 0.019 5.981 9 C 0.001 3.999 10 C -0.022 4.022 11 H 0.124 0.876 12 C -0.193 4.193 13 C -0.010 4.010 14 C -0.558 4.558 15 H 0.081 0.919 16 C -0.143 4.143 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.234 5.234 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.806 -7.571 2.162 19.469 hybrid contribution 0.729 0.467 -0.565 1.034 sum -17.077 -7.104 1.597 18.564 Atomic orbital electron populations 1.22742 0.80966 1.02777 0.99997 1.87881 1.19748 1.28069 1.95440 1.22503 0.93589 0.84704 1.00488 1.21439 0.93020 0.96424 1.04319 1.19713 0.83656 0.97952 1.04596 1.25559 0.99573 1.01604 0.84364 1.74563 0.89975 1.21882 1.24264 1.85274 1.22007 1.65333 1.25449 1.29606 0.97148 0.91556 0.81579 1.20357 0.85066 1.00363 0.96416 0.87629 1.21785 1.00886 0.93882 1.02780 1.19252 0.93044 0.90352 0.98327 1.21096 1.04496 1.11443 1.18794 0.91876 1.25010 0.98443 0.95311 0.95530 1.69976 1.34761 1.14117 1.34132 0.86485 0.82609 0.78045 0.80570 1.19566 1.21011 1.20958 1.71920 1.00031 1.22349 1.29129 0.94001 0.89628 0.94072 0.93015 0.92851 0.90285 0.90713 0.89186 0.88607 0.94060 0.89637 0.92310 0.95247 0.95997 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.25 10.70 -35.23 -0.38 -4.63 16 3 C 0.06 0.59 5.94 37.16 0.22 0.81 16 4 C -0.11 -1.27 5.57 -26.73 -0.15 -1.42 16 5 C -0.02 -0.24 5.84 -27.89 -0.16 -0.41 16 6 C 0.16 2.76 7.47 -156.37 -1.17 1.59 16 7 N -0.40 -7.43 12.16 30.90 0.38 -7.06 16 8 O 0.08 1.50 11.31 18.10 0.20 1.71 16 9 C 0.22 4.31 7.02 -13.06 -0.09 4.22 16 10 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 11 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 12 C -0.14 -2.33 8.99 37.16 0.33 -2.00 16 13 C 0.03 0.69 4.43 -27.88 -0.12 0.56 16 14 C -0.52 -13.61 8.41 -34.44 -0.29 -13.90 16 15 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 N -0.50 -9.48 11.55 -9.87 -0.11 -9.60 16 23 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -30.38 319.10 -5.84 -36.22 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.78 Total: -4.05 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.67 Total: -7.96 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 1.00 Total: -41.80 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -0.17 Total: -2.92 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.38 -5.84 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234605339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.169 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds