Wall clock time and date at job start Mon Mar 30 2020 06:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00046 * 2 1 4 4 H 1.08997 * 109.46485 * 329.99568 * 3 2 1 5 5 C 1.52996 * 109.47163 * 89.99685 * 3 2 1 6 6 C 1.53002 * 109.46797 * 210.00013 * 3 2 1 7 7 C 1.50695 * 109.47197 * 64.99988 * 6 3 2 8 8 N 1.29946 * 126.29059 * 89.97414 * 7 6 3 9 9 O 1.21304 * 110.25017 * 179.97438 * 8 7 6 10 10 C 1.33644 * 109.81172 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.54726 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.46977 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47043 * 300.01166 * 11 10 9 14 14 C 1.52997 * 109.47721 * 60.01632 * 11 10 9 15 15 C 1.50701 * 109.47212 * 174.99887 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 N 1.31128 * 106.90081 * 0.21548 * 10 9 8 24 24 H 1.08998 * 109.47090 * 300.00305 * 1 2 3 25 25 H 1.08992 * 109.47090 * 60.00216 * 1 2 3 26 26 H 1.09006 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46922 * 60.00317 * 5 3 2 28 28 H 1.08999 * 109.46870 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47453 * 300.00013 * 5 3 2 30 30 H 1.09007 * 109.47168 * 304.99675 * 6 3 2 31 31 H 1.08999 * 109.46786 * 185.00159 * 6 3 2 32 32 H 1.08998 * 109.47430 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.47271 * 300.01083 * 13 11 10 34 34 H 1.09008 * 109.46731 * 60.00465 * 13 11 10 35 35 H 1.09002 * 109.47153 * 54.99889 * 14 11 10 36 36 H 1.09001 * 109.46832 * 295.00079 * 14 11 10 37 37 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1416 0.9235 -2.1733 8 7 2.9418 1.7692 -3.1394 9 8 2.8026 1.1803 -4.1908 10 6 2.9030 -0.1369 -3.9889 11 6 2.7895 -1.2163 -5.0344 12 1 2.9151 -2.1919 -4.5646 13 6 1.4118 -1.1427 -5.6959 14 6 3.8752 -1.0166 -6.0937 15 6 3.8404 -2.1632 -7.0711 16 1 3.1161 -2.9549 -6.9491 17 6 4.7327 -2.2009 -8.1216 18 7 4.7020 -3.2013 -8.9747 19 14 5.9850 -0.8311 -8.3328 20 1 7.2252 -1.1757 -7.5921 21 1 6.2996 -0.6662 -9.7747 22 1 5.4262 0.4372 -7.7998 23 7 3.1139 -0.3111 -2.7064 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.8829 1.0775 1.9563 28 1 2.6614 2.7670 1.4424 29 1 1.2568 1.8015 1.9563 30 1 3.9932 0.5050 -0.2617 31 1 3.8427 2.2369 -0.6443 32 1 1.3295 -1.9236 -6.4518 33 1 0.6384 -1.2849 -4.9412 34 1 1.2861 -0.1671 -6.1657 35 1 4.8517 -0.9803 -5.6108 36 1 3.6974 -0.0813 -6.6244 37 1 5.3299 -3.2280 -9.7136 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234740726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:03 Heat of formation + Delta-G solvation = 1.868466 kcal Electronic energy + Delta-G solvation = -18908.199710 eV Core-core repulsion = 15881.688761 eV Total energy + Delta-G solvation = -3026.510949 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.16129 -38.61580 -35.98704 -35.50580 -33.17191 -32.33268 -30.89753 -28.06123 -27.70632 -26.71978 -24.57413 -23.23410 -22.29185 -21.38682 -19.48011 -17.64115 -17.20262 -17.03899 -16.57091 -15.49608 -15.44375 -14.74726 -14.22378 -14.07898 -13.63562 -13.22568 -12.98958 -12.80882 -12.58848 -12.29686 -12.20028 -11.98996 -11.77531 -11.52308 -11.21391 -11.13386 -10.94208 -10.84373 -10.57843 -10.30423 -10.15321 -9.85599 -9.81652 -9.34506 -9.27194 -8.60456 -6.11152 -4.10914 1.54978 2.59202 3.28686 3.31659 3.36658 3.40622 3.55688 3.85125 4.35159 4.40292 4.62341 4.80414 4.90005 5.11296 5.19460 5.22052 5.24631 5.38002 5.43394 5.50171 5.56759 5.64705 5.74362 5.78430 5.86707 5.99146 6.23119 6.31936 6.49940 6.54242 6.82502 7.01840 7.01996 7.19090 7.64362 8.41366 8.55932 8.91040 9.49884 11.01305 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.037293 B = 0.004672 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.636991 B = 5991.895725 C = 6380.864799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.172 4.172 6 C -0.024 4.024 7 C 0.168 3.832 8 N -0.403 5.403 9 O 0.071 5.929 10 C 0.210 3.790 11 C 0.010 3.990 12 H 0.111 0.889 13 C -0.136 4.136 14 C -0.008 4.008 15 C -0.520 4.520 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.264 1.264 23 N -0.482 5.482 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 9.474 17.070 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.080 0.920 5 C -0.230 4.230 6 C -0.063 4.063 7 C -0.105 4.105 8 N -0.114 5.114 9 O 0.015 5.985 10 C -0.010 4.010 11 C -0.011 4.011 12 H 0.129 0.871 13 C -0.194 4.194 14 C -0.046 4.046 15 C -0.558 4.558 16 H 0.098 0.902 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.700 3.300 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.189 1.189 23 N -0.215 5.215 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.464 9.869 17.402 21.024 hybrid contribution 0.575 0.830 -0.334 1.063 sum -5.889 10.699 17.068 20.987 Atomic orbital electron populations 1.22755 0.81299 1.02850 0.99460 1.88035 1.19357 1.26670 1.94952 1.22054 0.93881 0.85578 0.95417 0.92034 1.22259 1.02720 1.01824 0.96148 1.20058 0.97744 1.03851 0.84670 1.25556 1.01038 0.85241 0.98680 1.74562 1.22071 1.21860 0.92866 1.85252 1.65033 1.19850 1.28358 1.29653 0.92329 0.85462 0.93533 1.20099 0.99308 0.91081 0.90599 0.87070 1.21789 0.93229 1.03822 1.00549 1.19718 0.92541 0.99067 0.93284 1.20929 1.18904 1.06897 1.09059 0.90196 1.24935 0.97024 0.95496 0.95482 1.69889 1.37425 1.30919 1.15343 0.86874 0.82218 0.83428 0.77433 1.20217 1.21169 1.18875 1.71985 1.20994 1.23329 1.05184 0.94286 0.94430 0.89472 0.91272 0.91335 0.92111 0.87849 0.88021 0.89178 0.93889 0.92451 0.96460 0.95386 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.43 16 2 O -0.37 -4.87 10.10 -35.23 -0.36 -5.23 16 3 C 0.09 0.99 2.71 -26.73 -0.07 0.92 16 4 H 0.06 0.69 7.79 -51.93 -0.40 0.28 16 5 C -0.17 -1.37 9.53 37.16 0.35 -1.01 16 6 C -0.02 -0.30 5.55 -27.88 -0.15 -0.45 16 7 C 0.17 2.82 7.24 -156.36 -1.13 1.69 16 8 N -0.40 -7.24 12.16 30.90 0.38 -6.87 16 9 O 0.07 1.35 11.31 18.10 0.20 1.56 16 10 C 0.21 4.00 7.02 -13.06 -0.09 3.90 16 11 C 0.01 0.18 2.81 -91.77 -0.26 -0.07 16 12 H 0.11 2.15 8.14 -51.92 -0.42 1.73 16 13 C -0.14 -2.33 8.98 37.16 0.33 -2.00 16 14 C -0.01 -0.18 3.50 -27.88 -0.10 -0.28 16 15 C -0.52 -13.86 8.96 -34.44 -0.31 -14.17 16 16 H 0.08 2.23 7.30 -52.49 -0.38 1.85 16 17 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 19 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 23 N -0.48 -9.09 11.55 -9.87 -0.11 -9.21 16 24 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 25 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.63 6.95 -51.93 -0.36 1.27 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -30.83 313.96 -5.19 -36.02 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.70 Total: -3.57 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.43 Total: -8.11 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 1.04 Total: -41.95 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.15 Total: -3.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.83 -5.19 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234740726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.885 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds