Wall clock time and date at job start Mon Mar 30 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00046 * 2 1 4 4 H 1.08997 * 109.46485 * 329.99568 * 3 2 1 5 5 C 1.52996 * 109.47163 * 89.99685 * 3 2 1 6 6 C 1.53002 * 109.46797 * 210.00013 * 3 2 1 7 7 C 1.50695 * 109.47197 * 64.99988 * 6 3 2 8 8 N 1.29946 * 126.29059 * 89.97414 * 7 6 3 9 9 O 1.21304 * 110.25017 * 179.97438 * 8 7 6 10 10 C 1.33644 * 109.81172 * 0.02562 * 9 8 7 11 11 C 1.50698 * 126.54726 * 179.97438 * 10 9 8 12 12 H 1.09008 * 109.46977 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47043 * 300.01166 * 11 10 9 14 14 C 1.52997 * 109.47721 * 60.01632 * 11 10 9 15 15 C 1.50701 * 109.47212 * 174.99887 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 N 1.31128 * 106.90081 * 0.21548 * 10 9 8 24 24 H 1.08998 * 109.47090 * 300.00305 * 1 2 3 25 25 H 1.08992 * 109.47090 * 60.00216 * 1 2 3 26 26 H 1.09006 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46922 * 60.00317 * 5 3 2 28 28 H 1.08999 * 109.46870 * 179.97438 * 5 3 2 29 29 H 1.08999 * 109.47453 * 300.00013 * 5 3 2 30 30 H 1.09007 * 109.47168 * 304.99675 * 6 3 2 31 31 H 1.08999 * 109.46786 * 185.00159 * 6 3 2 32 32 H 1.08998 * 109.47430 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.47271 * 300.01083 * 13 11 10 34 34 H 1.09008 * 109.46731 * 60.00465 * 13 11 10 35 35 H 1.09002 * 109.47153 * 54.99889 * 14 11 10 36 36 H 1.09001 * 109.46832 * 295.00079 * 14 11 10 37 37 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1416 0.9235 -2.1733 8 7 2.9418 1.7692 -3.1394 9 8 2.8026 1.1803 -4.1908 10 6 2.9030 -0.1369 -3.9889 11 6 2.7895 -1.2163 -5.0344 12 1 2.9151 -2.1919 -4.5646 13 6 1.4118 -1.1427 -5.6959 14 6 3.8752 -1.0166 -6.0937 15 6 3.8404 -2.1632 -7.0711 16 1 3.1161 -2.9549 -6.9491 17 6 4.7327 -2.2009 -8.1216 18 7 4.7020 -3.2013 -8.9747 19 14 5.9850 -0.8311 -8.3328 20 1 7.2252 -1.1757 -7.5921 21 1 6.2996 -0.6662 -9.7747 22 1 5.4262 0.4372 -7.7998 23 7 3.1139 -0.3111 -2.7064 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 2.8829 1.0775 1.9563 28 1 2.6614 2.7670 1.4424 29 1 1.2568 1.8015 1.9563 30 1 3.9932 0.5050 -0.2617 31 1 3.8427 2.2369 -0.6443 32 1 1.3295 -1.9236 -6.4518 33 1 0.6384 -1.2849 -4.9412 34 1 1.2861 -0.1671 -6.1657 35 1 4.8517 -0.9803 -5.6108 36 1 3.6974 -0.0813 -6.6244 37 1 5.3299 -3.2280 -9.7136 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234740726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:02 Heat of formation + Delta-G solvation = -19.179718 kcal Electronic energy + Delta-G solvation = -18909.112428 eV Core-core repulsion = 15881.688761 eV Total energy + Delta-G solvation = -3027.423667 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.56032 -39.48799 -37.59084 -36.86004 -34.68175 -33.85859 -32.29273 -29.55304 -28.93792 -27.53663 -26.17629 -24.62006 -23.79503 -22.47661 -20.95901 -19.15520 -19.02233 -18.26747 -17.70272 -16.49670 -16.47999 -16.26945 -16.00451 -15.40849 -15.01225 -14.66822 -14.06864 -14.00568 -13.77597 -13.61963 -13.23737 -13.10964 -13.00820 -12.95332 -12.68667 -12.56986 -12.32468 -12.09302 -11.98120 -11.91251 -11.72572 -11.64230 -11.33614 -10.89821 -10.74592 -10.57142 -8.26495 -6.29802 0.11333 1.22876 1.36528 1.39447 1.49090 1.83897 2.36924 2.63051 2.74476 3.05516 3.08904 3.80700 3.82857 4.07621 4.11976 4.14250 4.20263 4.38256 4.44209 4.53214 4.54352 4.68509 4.77150 4.81355 4.84129 4.89600 4.94644 4.99341 5.05129 5.16475 5.27857 5.31661 5.45136 5.61044 6.21430 6.27203 6.76518 7.14255 7.33930 8.88923 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.037293 B = 0.004672 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.636991 B = 5991.895725 C = 6380.864799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.089 3.911 4 H 0.058 0.942 5 C -0.164 4.164 6 C -0.028 4.028 7 C 0.174 3.826 8 N -0.411 5.411 9 O 0.059 5.941 10 C 0.207 3.793 11 C 0.016 3.984 12 H 0.108 0.892 13 C -0.130 4.130 14 C -0.003 4.003 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.016 3.984 18 N -0.943 5.943 19 Si 0.932 3.068 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.251 1.251 23 N -0.497 5.497 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.013 0.987 36 H 0.031 0.969 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 11.311 18.895 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C 0.030 3.970 4 H 0.076 0.924 5 C -0.221 4.221 6 C -0.067 4.067 7 C -0.099 4.099 8 N -0.124 5.124 9 O 0.006 5.994 10 C -0.013 4.013 11 C -0.004 4.004 12 H 0.126 0.874 13 C -0.188 4.188 14 C -0.042 4.042 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.182 4.182 18 N -0.583 5.583 19 Si 0.757 3.243 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.175 1.175 23 N -0.231 5.231 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.049 0.951 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.422 11.717 19.224 23.411 hybrid contribution 0.499 0.219 -0.828 0.991 sum -5.922 11.935 18.396 22.715 Atomic orbital electron populations 1.22864 0.80173 1.03431 1.00182 1.87988 1.20758 1.28048 1.95212 1.22165 0.92851 0.84852 0.97141 0.92376 1.22203 1.03425 1.02691 0.93803 1.20408 0.98984 1.05353 0.81916 1.26335 0.99116 0.84238 1.00215 1.74560 1.22998 1.21954 0.92877 1.85239 1.65497 1.19661 1.29017 1.29406 0.92818 0.85495 0.93599 1.19883 0.99267 0.91276 0.89976 0.87377 1.21725 0.92688 1.03631 1.00710 1.19594 0.93680 0.97462 0.93420 1.21191 1.17674 1.07195 1.09485 0.92646 1.25744 0.99217 0.97765 0.95428 1.70015 1.38842 1.33107 1.16356 0.85927 0.79831 0.81022 0.77559 1.19754 1.20779 1.17465 1.72007 1.21260 1.24593 1.05206 0.92030 0.95182 0.89086 0.91200 0.89465 0.91275 0.87419 0.85397 0.90581 0.91570 0.91837 0.96822 0.95084 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 113.37 1.23 1.79 16 2 O -0.40 -9.83 10.10 -148.98 -1.50 -11.34 16 3 C 0.09 1.75 2.71 30.59 0.08 1.83 16 4 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 5 C -0.16 -2.09 9.53 71.98 0.69 -1.41 16 6 C -0.03 -0.62 5.55 29.85 0.17 -0.45 16 7 C 0.17 5.54 7.24 138.46 1.00 6.55 16 8 N -0.41 -14.11 12.16 -60.30 -0.73 -14.84 16 9 O 0.06 2.15 11.31 74.82 0.85 3.00 16 10 C 0.21 7.65 7.02 88.38 0.62 8.27 16 11 C 0.02 0.62 2.81 -11.54 -0.03 0.59 16 12 H 0.11 4.17 8.14 -2.38 -0.02 4.15 16 13 C -0.13 -4.35 8.98 71.98 0.65 -3.71 16 14 C 0.00 -0.15 3.50 29.85 0.10 -0.04 16 15 C -0.52 -27.87 8.96 25.60 0.23 -27.64 16 16 H 0.06 3.19 7.30 -2.91 -0.02 3.17 16 17 C 0.02 0.92 5.47 84.66 0.46 1.38 16 18 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 19 Si 0.93 43.42 27.47 68.60 1.88 45.30 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 23 N -0.50 -18.15 11.55 -303.18 -3.50 -21.65 16 24 H 0.06 0.86 7.87 -2.39 -0.02 0.84 16 25 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 26 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 30 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.77 6.95 -2.39 -0.02 2.75 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 36 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 37 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -65.57 313.96 3.47 -62.09 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 0.99 Total: 6.94 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.20 Total: -12.84 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.94 Total: -93.16 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.66 Total: -8.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Total: -65.57 3.47 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234740726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.913 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds