Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00145 * 2 1 4 4 H 1.09001 * 109.47513 * 330.00983 * 3 2 1 5 5 C 1.53008 * 109.46805 * 90.00071 * 3 2 1 6 6 C 1.52992 * 109.47687 * 209.99967 * 3 2 1 7 7 C 1.50703 * 109.47034 * 65.00218 * 6 3 2 8 8 N 1.29946 * 126.28637 * 269.98048 * 7 6 3 9 9 O 1.21309 * 110.24780 * 179.72237 * 8 7 6 10 10 C 1.33636 * 109.81011 * 0.46891 * 9 8 7 11 11 C 1.50706 * 126.55139 * 179.80311 * 10 9 8 12 12 H 1.09000 * 109.47161 * 179.68577 * 11 10 9 13 13 C 1.52997 * 109.47103 * 59.68543 * 11 10 9 14 14 C 1.53002 * 109.46925 * 299.68713 * 11 10 9 15 15 C 1.50700 * 109.47081 * 185.00085 * 14 11 10 16 16 H 1.07993 * 119.99743 * 0.02562 * 15 14 11 17 17 C 1.37876 * 119.99703 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00162 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47128 * 59.99701 * 19 17 15 21 21 H 1.48494 * 109.47350 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47081 * 300.00306 * 19 17 15 23 23 N 1.31131 * 106.89971 * 359.53471 * 10 9 8 24 24 H 1.08991 * 109.46934 * 299.99429 * 1 2 3 25 25 H 1.09000 * 109.47037 * 59.99338 * 1 2 3 26 26 H 1.08996 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47010 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.46954 * 300.00419 * 5 3 2 29 29 H 1.09001 * 109.47249 * 60.00155 * 5 3 2 30 30 H 1.08999 * 109.47317 * 305.00509 * 6 3 2 31 31 H 1.08994 * 109.47842 * 185.00461 * 6 3 2 32 32 H 1.09002 * 109.46777 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47140 * 300.00046 * 13 11 10 34 34 H 1.08992 * 109.47280 * 59.99899 * 13 11 10 35 35 H 1.09005 * 109.46847 * 304.99964 * 14 11 10 36 36 H 1.08999 * 109.47369 * 64.99731 * 14 11 10 37 37 H 0.96999 * 119.99643 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7712 1.4426 6 6 3.3589 1.2633 -0.7212 7 6 3.1416 0.9237 -2.1733 8 7 3.1197 -0.2687 -2.6893 9 8 2.9177 -0.2056 -3.8838 10 6 2.7979 1.0723 -4.2560 11 6 2.5464 1.5807 -5.6522 12 1 2.4926 2.6693 -5.6384 13 6 1.2248 1.0114 -6.1719 14 6 3.6881 1.1380 -6.5695 15 6 3.5008 1.7478 -7.9348 16 1 2.6526 2.3874 -8.1287 17 6 4.4130 1.4899 -8.9360 18 7 5.4469 0.7122 -8.6993 19 14 4.1805 2.2452 -10.6286 20 1 4.1821 3.7259 -10.5144 21 1 5.2894 1.8167 -11.5185 22 1 2.8855 1.7941 -11.1983 23 7 2.9352 1.7992 -3.1732 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 2.6607 2.7671 1.4426 28 1 1.2569 1.8012 1.9564 29 1 2.8830 1.0773 1.9564 30 1 3.9931 0.5052 -0.2618 31 1 3.8427 2.2369 -0.6442 32 1 1.0431 1.3787 -7.1819 33 1 1.2785 -0.0772 -6.1857 34 1 0.4114 1.3267 -5.5185 35 1 4.6390 1.4684 -6.1513 36 1 3.6862 0.0513 -6.6535 37 1 6.0888 0.5311 -9.4036 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234740927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -2.733704 kcal Electronic energy + Delta-G solvation = -18799.482689 eV Core-core repulsion = 15772.772175 eV Total energy + Delta-G solvation = -3026.710514 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.03404 -38.58872 -35.86798 -35.40784 -33.09335 -32.33095 -30.74572 -27.95546 -27.12360 -26.72447 -24.58527 -23.18584 -22.40885 -21.43748 -19.51357 -17.51256 -17.03037 -16.73932 -16.40189 -15.45149 -15.40130 -14.62237 -14.50821 -14.06288 -13.36390 -13.19894 -12.94652 -12.62069 -12.50467 -12.26422 -11.91287 -11.87588 -11.74054 -11.35648 -11.17184 -10.98932 -10.89364 -10.83292 -10.54051 -10.52651 -10.13464 -9.92782 -9.72351 -9.25793 -9.11678 -8.43532 -6.07564 -4.11754 1.71338 2.66953 3.30469 3.35592 3.36789 3.45884 3.58405 3.94355 4.38166 4.48769 4.68523 4.90416 4.95883 5.12999 5.22256 5.28525 5.34877 5.40132 5.51575 5.54811 5.65009 5.71832 5.81242 5.85581 5.91532 6.07660 6.30996 6.40617 6.58152 6.69619 6.83654 7.02915 7.49465 7.57949 7.87657 8.23998 8.69887 8.92424 9.52596 11.03706 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.046404 B = 0.004080 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.249416 B = 6861.471220 C = 7010.465122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.378 6.378 3 C 0.089 3.911 4 H 0.066 0.934 5 C -0.171 4.171 6 C -0.022 4.022 7 C 0.161 3.839 8 N -0.382 5.382 9 O 0.075 5.925 10 C 0.216 3.784 11 C -0.001 4.001 12 H 0.104 0.896 13 C -0.135 4.135 14 C 0.029 3.971 15 C -0.522 4.522 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.504 5.504 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.022 0.978 36 H 0.029 0.971 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.410 1.667 15.794 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.297 6.297 3 C 0.030 3.970 4 H 0.084 0.916 5 C -0.229 4.229 6 C -0.061 4.061 7 C -0.112 4.112 8 N -0.091 5.091 9 O 0.018 5.982 10 C -0.004 4.004 11 C -0.021 4.021 12 H 0.122 0.878 13 C -0.193 4.193 14 C -0.009 4.009 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.238 5.238 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.992 1.059 16.432 18.304 hybrid contribution -0.169 0.611 -1.063 1.238 sum -8.161 1.670 15.369 17.481 Atomic orbital electron populations 1.22751 0.81249 1.02703 0.99657 1.87988 1.19477 1.27176 1.95015 1.22078 0.94125 0.85368 0.95445 0.91587 1.22254 1.02623 1.01911 0.96103 1.20025 0.97441 1.04134 0.84520 1.25481 1.01891 0.85100 0.98761 1.74616 1.20338 1.23082 0.91097 1.85295 1.64033 1.30874 1.17984 1.29544 0.92252 0.79431 0.99150 1.20326 0.99761 1.00753 0.81293 0.87755 1.21774 0.93960 1.01411 1.02120 1.19236 0.90966 0.97757 0.92926 1.21022 1.09794 1.30205 0.95006 0.92018 1.25002 0.95068 0.95095 0.99031 1.69960 1.12769 1.36610 1.33625 0.86603 0.77760 0.79614 0.83720 1.20154 1.21299 1.20086 1.71898 1.22110 1.31883 0.97910 0.94174 0.94279 0.89658 0.91160 0.92182 0.91448 0.88531 0.87517 0.89691 0.92319 0.94203 0.96009 0.95266 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 101.05 1.09 1.44 16 2 O -0.38 -5.06 10.10 -35.23 -0.36 -5.41 16 3 C 0.09 1.03 2.71 -26.73 -0.07 0.95 16 4 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 5 C -0.17 -1.44 9.53 37.16 0.35 -1.09 16 6 C -0.02 -0.29 5.55 -27.89 -0.15 -0.45 16 7 C 0.16 2.85 7.24 -156.37 -1.13 1.71 16 8 N -0.38 -7.50 12.16 30.90 0.38 -7.13 16 9 O 0.08 1.54 11.31 18.12 0.20 1.74 16 10 C 0.22 4.28 7.02 -13.05 -0.09 4.19 16 11 C 0.00 -0.02 2.81 -91.77 -0.26 -0.27 16 12 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 13 C -0.13 -2.34 8.99 37.16 0.33 -2.00 16 14 C 0.03 0.72 4.43 -27.88 -0.12 0.59 16 15 C -0.52 -13.73 8.41 -34.44 -0.29 -14.02 16 16 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 19 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 N -0.50 -9.66 11.55 -9.87 -0.11 -9.78 16 24 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 25 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -30.60 317.56 -5.56 -36.16 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -5.74 Total: -3.46 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.44 Total: -7.39 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 1.00 Total: -42.15 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.15 Total: -3.67 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.60 -5.56 -36.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234740927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.423 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds