Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00145 * 2 1 4 4 H 1.09001 * 109.47513 * 330.00983 * 3 2 1 5 5 C 1.53008 * 109.46805 * 90.00071 * 3 2 1 6 6 C 1.52992 * 109.47687 * 209.99967 * 3 2 1 7 7 C 1.50703 * 109.47034 * 65.00218 * 6 3 2 8 8 N 1.29946 * 126.28637 * 269.98048 * 7 6 3 9 9 O 1.21309 * 110.24780 * 179.72237 * 8 7 6 10 10 C 1.33636 * 109.81011 * 0.46891 * 9 8 7 11 11 C 1.50706 * 126.55139 * 179.80311 * 10 9 8 12 12 H 1.09000 * 109.47161 * 179.68577 * 11 10 9 13 13 C 1.52997 * 109.47103 * 59.68543 * 11 10 9 14 14 C 1.53002 * 109.46925 * 299.68713 * 11 10 9 15 15 C 1.50700 * 109.47081 * 185.00085 * 14 11 10 16 16 H 1.07993 * 119.99743 * 0.02562 * 15 14 11 17 17 C 1.37876 * 119.99703 * 179.97438 * 15 14 11 18 18 N 1.31520 * 120.00162 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99918 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47128 * 59.99701 * 19 17 15 21 21 H 1.48494 * 109.47350 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47081 * 300.00306 * 19 17 15 23 23 N 1.31131 * 106.89971 * 359.53471 * 10 9 8 24 24 H 1.08991 * 109.46934 * 299.99429 * 1 2 3 25 25 H 1.09000 * 109.47037 * 59.99338 * 1 2 3 26 26 H 1.08996 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47010 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.46954 * 300.00419 * 5 3 2 29 29 H 1.09001 * 109.47249 * 60.00155 * 5 3 2 30 30 H 1.08999 * 109.47317 * 305.00509 * 6 3 2 31 31 H 1.08994 * 109.47842 * 185.00461 * 6 3 2 32 32 H 1.09002 * 109.46777 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47140 * 300.00046 * 13 11 10 34 34 H 1.08992 * 109.47280 * 59.99899 * 13 11 10 35 35 H 1.09005 * 109.46847 * 304.99964 * 14 11 10 36 36 H 1.08999 * 109.47369 * 64.99731 * 14 11 10 37 37 H 0.96999 * 119.99643 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7712 1.4426 6 6 3.3589 1.2633 -0.7212 7 6 3.1416 0.9237 -2.1733 8 7 3.1197 -0.2687 -2.6893 9 8 2.9177 -0.2056 -3.8838 10 6 2.7979 1.0723 -4.2560 11 6 2.5464 1.5807 -5.6522 12 1 2.4926 2.6693 -5.6384 13 6 1.2248 1.0114 -6.1719 14 6 3.6881 1.1380 -6.5695 15 6 3.5008 1.7478 -7.9348 16 1 2.6526 2.3874 -8.1287 17 6 4.4130 1.4899 -8.9360 18 7 5.4469 0.7122 -8.6993 19 14 4.1805 2.2452 -10.6286 20 1 4.1821 3.7259 -10.5144 21 1 5.2894 1.8167 -11.5185 22 1 2.8855 1.7941 -11.1983 23 7 2.9352 1.7992 -3.1732 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 2.6607 2.7671 1.4426 28 1 1.2569 1.8012 1.9564 29 1 2.8830 1.0773 1.9564 30 1 3.9931 0.5052 -0.2618 31 1 3.8427 2.2369 -0.6442 32 1 1.0431 1.3787 -7.1819 33 1 1.2785 -0.0772 -6.1857 34 1 0.4114 1.3267 -5.5185 35 1 4.6390 1.4684 -6.1513 36 1 3.6862 0.0513 -6.6535 37 1 6.0888 0.5311 -9.4036 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234740927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -23.241191 kcal Electronic energy + Delta-G solvation = -18800.371961 eV Core-core repulsion = 15772.772175 eV Total energy + Delta-G solvation = -3027.599785 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.53941 -39.50654 -37.52704 -36.85948 -34.66980 -33.78329 -32.22226 -29.03997 -28.89197 -27.56755 -26.27326 -24.70546 -23.99262 -22.50272 -21.03969 -19.03949 -18.62740 -18.23882 -17.69862 -16.55650 -16.43280 -16.29463 -16.15364 -15.29575 -14.86153 -14.42158 -14.12456 -13.88154 -13.74197 -13.47316 -13.27473 -13.00028 -12.96888 -12.81788 -12.68728 -12.59182 -12.34595 -12.27872 -12.10147 -11.93539 -11.75418 -11.53738 -11.26675 -10.81160 -10.59954 -10.53101 -8.17025 -6.28164 0.16984 1.21980 1.47543 1.49978 1.57389 1.90419 2.44397 2.62859 2.75088 3.09820 3.18291 3.81446 3.90043 4.04043 4.15644 4.20227 4.28464 4.37559 4.43938 4.56133 4.58284 4.67490 4.75215 4.82917 4.84565 4.90494 4.99077 5.04229 5.09480 5.28044 5.35723 5.41239 5.58527 5.80238 6.16810 6.18498 6.85807 7.17947 7.41291 8.95395 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.046404 B = 0.004080 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.249416 B = 6861.471220 C = 7010.465122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.089 3.911 4 H 0.062 0.938 5 C -0.163 4.163 6 C -0.027 4.027 7 C 0.170 3.830 8 N -0.403 5.403 9 O 0.055 5.945 10 C 0.208 3.792 11 C 0.009 3.991 12 H 0.113 0.887 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.530 4.530 16 H 0.079 0.921 17 C 0.001 3.999 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.291 1.291 22 H -0.262 1.262 23 N -0.509 5.509 24 H 0.063 0.937 25 H 0.030 0.970 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.067 0.933 35 H -0.013 1.013 36 H 0.003 0.997 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 3.091 16.525 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.220 4.220 6 C -0.065 4.065 7 C -0.103 4.103 8 N -0.115 5.115 9 O 0.002 5.998 10 C -0.011 4.011 11 C -0.011 4.011 12 H 0.131 0.869 13 C -0.186 4.186 14 C -0.001 4.001 15 C -0.568 4.568 16 H 0.097 0.903 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.217 1.217 22 H -0.186 1.186 23 N -0.243 5.243 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.005 0.995 36 H 0.021 0.979 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.394 2.485 17.151 19.712 hybrid contribution 0.273 0.159 -1.198 1.239 sum -9.120 2.645 15.953 18.565 Atomic orbital electron populations 1.22878 0.80004 1.03431 1.00371 1.87947 1.20990 1.28359 1.95266 1.22165 0.92879 0.84748 0.97194 0.92028 1.22196 1.03449 1.02715 0.93661 1.20395 0.98968 1.05525 0.81632 1.26329 0.99525 0.84187 1.00295 1.74620 1.21859 1.24204 0.90835 1.85275 1.64711 1.31159 1.18625 1.29524 0.92604 0.79590 0.99406 1.20132 0.99151 1.01246 0.80584 0.86859 1.21726 0.93231 1.01009 1.02617 1.19028 0.91366 0.95972 0.93759 1.21478 1.10001 1.29807 0.95476 0.90256 1.25969 0.94731 0.95555 1.03446 1.70118 1.13995 1.38515 1.34960 0.85470 0.77937 0.79024 0.78453 1.19058 1.21674 1.18645 1.71916 1.22194 1.32098 0.98088 0.91839 0.95107 0.89062 0.89425 0.91153 0.91270 0.87856 0.85214 0.89613 0.92806 0.91364 0.99470 0.97872 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.82 113.37 1.23 1.79 16 2 O -0.41 -10.34 10.10 -148.98 -1.50 -11.85 16 3 C 0.09 1.88 2.71 30.59 0.08 1.97 16 4 H 0.06 1.34 7.79 -2.39 -0.02 1.33 16 5 C -0.16 -2.27 9.53 71.98 0.69 -1.58 16 6 C -0.03 -0.65 5.55 29.85 0.17 -0.48 16 7 C 0.17 5.91 7.24 138.46 1.00 6.91 16 8 N -0.40 -15.91 12.16 -60.31 -0.73 -16.64 16 9 O 0.05 2.28 11.31 74.89 0.85 3.13 16 10 C 0.21 8.32 7.02 88.38 0.62 8.94 16 11 C 0.01 0.37 2.81 -11.54 -0.03 0.33 16 12 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 13 C -0.13 -4.30 8.99 71.98 0.65 -3.65 16 14 C 0.04 1.86 4.43 29.85 0.13 2.00 16 15 C -0.53 -27.87 8.41 25.60 0.22 -27.66 16 16 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.94 -55.88 13.29 21.45 0.28 -55.60 16 19 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 N -0.51 -19.20 11.55 -303.19 -3.50 -22.71 16 24 H 0.06 0.91 7.87 -2.39 -0.02 0.89 16 25 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.09 2.86 6.95 -2.39 -0.02 2.85 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 36 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -66.48 317.56 3.67 -62.81 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.04 Total: 7.45 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.21 Total: -10.91 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -3.95 Total: -94.94 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.66 Total: -8.72 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -66.48 3.67 -62.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234740927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.572 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds