Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99769 * 2 1 4 4 H 1.09006 * 109.47088 * 29.99552 * 3 2 1 5 5 C 1.50700 * 109.47225 * 270.00010 * 3 2 1 6 6 N 1.29954 * 126.28654 * 314.97703 * 5 3 2 7 7 O 1.21293 * 110.25286 * 180.02562 * 6 5 3 8 8 C 1.33642 * 109.81058 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55339 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47431 * 269.97717 * 9 8 7 11 11 C 1.50698 * 109.47431 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99957 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99962 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99802 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00006 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46852 * 59.99696 * 15 13 11 17 17 H 1.48492 * 109.47007 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47131 * 300.00165 * 15 13 11 19 19 N 1.31130 * 106.90015 * 0.02562 * 8 7 6 20 20 C 1.52998 * 109.47283 * 149.99625 * 3 2 1 21 21 C 1.52998 * 109.47245 * 300.00100 * 20 3 2 22 22 C 1.53001 * 109.47055 * 60.00016 * 20 3 2 23 23 H 1.08995 * 109.47597 * 300.00064 * 1 2 3 24 24 H 1.09003 * 109.46857 * 60.00536 * 1 2 3 25 25 H 1.09004 * 109.46614 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46935 * 29.97313 * 9 8 7 27 27 H 1.08997 * 109.47416 * 149.97136 * 9 8 7 28 28 H 1.09000 * 109.46731 * 299.99720 * 10 9 8 29 29 H 1.08997 * 109.47295 * 59.99345 * 10 9 8 30 30 H 0.96995 * 119.99350 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.47306 * 179.97438 * 20 3 2 32 32 H 1.09004 * 109.47190 * 60.00170 * 21 20 3 33 33 H 1.09002 * 109.47333 * 179.97438 * 21 20 3 34 34 H 1.08994 * 109.47272 * 300.00151 * 21 20 3 35 35 H 1.09004 * 109.47035 * 300.00523 * 22 20 3 36 36 H 1.09006 * 109.46717 * 59.99611 * 22 20 3 37 37 H 1.08998 * 109.47230 * 179.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 7 2.7118 1.0596 -2.3927 7 8 2.7446 1.7151 -3.4127 8 6 2.2560 2.9373 -3.1816 9 6 2.1216 4.0545 -4.1840 10 6 3.3985 4.8974 -4.1826 11 6 3.2644 6.0143 -5.1854 12 1 2.3591 6.1128 -5.7660 13 6 4.2974 6.9103 -5.3617 14 7 5.3997 6.7905 -4.6542 15 14 4.1314 8.2943 -6.6052 16 1 2.9727 9.1493 -6.2425 17 1 5.3702 9.1130 -6.6029 18 1 3.9190 7.7209 -7.9586 19 7 1.9159 2.9788 -1.9158 20 6 3.3588 1.2634 0.7213 21 6 3.1514 0.7975 2.1638 22 6 4.2927 0.2894 0.0001 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9648 3.6344 -5.1774 27 1 1.2716 4.6823 -3.9166 28 1 3.5554 5.3176 -3.1891 29 1 4.2486 4.2697 -4.4499 30 1 6.1262 7.4211 -4.7780 31 1 3.8023 2.2591 0.7209 32 1 2.7081 -0.1983 2.1638 33 1 4.1122 0.7671 2.6776 34 1 2.4860 1.4913 2.6776 35 1 3.8493 -0.7064 0.0001 36 1 4.4404 0.6214 -1.0276 37 1 5.2536 0.2598 0.5137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234742795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = 0.869374 kcal Electronic energy + Delta-G solvation = -18922.761629 eV Core-core repulsion = 15896.207356 eV Total energy + Delta-G solvation = -3026.554273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.14034 -38.91515 -35.54878 -34.98791 -34.14422 -32.41643 -30.20312 -27.95218 -27.14280 -26.23951 -25.79540 -23.32123 -22.14623 -20.86865 -19.92316 -17.72672 -17.19830 -16.67681 -16.34461 -15.69583 -15.48315 -14.56055 -14.16292 -14.06955 -13.84314 -13.39509 -13.18840 -12.45841 -12.39593 -12.13136 -11.92252 -11.90065 -11.59402 -11.34429 -11.03929 -10.98764 -10.89126 -10.77748 -10.71821 -10.55432 -10.15081 -10.05585 -10.01122 -9.35247 -9.16436 -8.45659 -6.10210 -4.15156 1.60601 2.56661 3.29489 3.33166 3.34914 3.38030 3.43193 3.91157 4.38295 4.53189 4.71862 4.79945 5.01685 5.12651 5.21273 5.26338 5.35059 5.47404 5.53241 5.57689 5.68047 5.81208 5.91084 5.96100 6.00240 6.09579 6.21785 6.25924 6.38960 6.44161 6.61166 6.91540 7.47813 7.54994 7.85017 8.20523 8.60416 8.89848 9.49813 11.01009 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.035778 B = 0.004273 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.421372 B = 6551.087116 C = 6892.453071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.190 3.810 4 H 0.090 0.910 5 C 0.134 3.866 6 N -0.370 5.370 7 O 0.069 5.931 8 C 0.211 3.789 9 C -0.028 4.028 10 C 0.028 3.972 11 C -0.527 4.527 12 H 0.061 0.939 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.493 5.493 20 C -0.088 4.088 21 C -0.141 4.141 22 C -0.146 4.146 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 -11.482 10.038 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.281 6.281 3 C 0.130 3.870 4 H 0.108 0.892 5 C -0.139 4.139 6 N -0.080 5.080 7 O 0.011 5.989 8 C -0.008 4.008 9 C -0.067 4.067 10 C -0.010 4.010 11 C -0.565 4.565 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 N -0.228 5.228 20 C -0.108 4.108 21 C -0.198 4.198 22 C -0.203 4.203 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.004 -12.244 10.559 17.619 hybrid contribution -0.184 1.175 -0.866 1.471 sum -7.188 -11.069 9.692 16.375 Atomic orbital electron populations 1.22856 0.80924 1.02867 1.00206 1.87982 1.19735 1.26020 1.94319 1.20265 0.96606 0.85074 0.85054 0.89183 1.26279 1.00084 0.87861 0.99720 1.74586 1.20060 1.19407 0.93939 1.85305 1.60633 1.22328 1.30640 1.29613 0.89914 0.87811 0.93414 1.20750 1.04371 0.88914 0.92703 1.19150 0.89488 0.93833 0.98517 1.21032 1.01931 1.11712 1.21854 0.92089 1.25008 0.95155 0.97885 0.96122 1.69959 1.05544 1.37129 1.40324 0.86566 0.77468 0.81831 0.81617 1.20095 1.21242 1.20064 1.71897 1.24025 1.19956 1.06940 1.21230 0.92979 1.01192 0.95367 1.21752 1.01859 1.01900 0.94307 1.21812 0.98193 0.99688 1.00628 0.93587 0.94178 0.89317 0.89103 0.88278 0.95543 0.95797 0.92682 0.89565 0.91696 0.92189 0.92744 0.91722 0.92087 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.36 -4.85 8.99 -35.23 -0.32 -5.17 16 3 C 0.19 2.66 2.40 -27.88 -0.07 2.60 16 4 H 0.09 1.14 7.79 -51.93 -0.40 0.74 16 5 C 0.13 2.35 6.52 -156.37 -1.02 1.33 16 6 N -0.37 -6.90 10.40 30.90 0.32 -6.58 16 7 O 0.07 1.32 11.31 18.11 0.20 1.52 16 8 C 0.21 4.06 7.77 -13.06 -0.10 3.96 16 9 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 10 C 0.03 0.70 4.95 -27.88 -0.14 0.56 16 11 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 15 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 N -0.49 -9.46 11.55 -9.87 -0.11 -9.58 16 20 C -0.09 -1.13 2.80 -90.62 -0.25 -1.38 16 21 C -0.14 -1.39 9.05 37.16 0.34 -1.06 16 22 C -0.15 -1.98 8.67 37.16 0.32 -1.66 16 23 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 27 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 36 H 0.06 0.98 6.08 -51.93 -0.32 0.67 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 314.49 15.07 4.74 4.74 Total: -1.00 -30.06 314.49 -5.56 -35.62 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.71 Total: -3.29 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.40 Total: -7.74 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.94 Total: -41.47 kcal Atomic # 8 Polarization: -3.54 SS G_CDS: -0.11 Total: -3.65 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.06 -5.56 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234742795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.488 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds