Wall clock time and date at job start Mon Mar 30 2020 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99769 * 2 1 4 4 H 1.09006 * 109.47088 * 29.99552 * 3 2 1 5 5 C 1.50700 * 109.47225 * 270.00010 * 3 2 1 6 6 N 1.29954 * 126.28654 * 314.97703 * 5 3 2 7 7 O 1.21293 * 110.25286 * 180.02562 * 6 5 3 8 8 C 1.33642 * 109.81058 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55339 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47431 * 269.97717 * 9 8 7 11 11 C 1.50698 * 109.47431 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99957 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99962 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99802 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00006 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46852 * 59.99696 * 15 13 11 17 17 H 1.48492 * 109.47007 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47131 * 300.00165 * 15 13 11 19 19 N 1.31130 * 106.90015 * 0.02562 * 8 7 6 20 20 C 1.52998 * 109.47283 * 149.99625 * 3 2 1 21 21 C 1.52998 * 109.47245 * 300.00100 * 20 3 2 22 22 C 1.53001 * 109.47055 * 60.00016 * 20 3 2 23 23 H 1.08995 * 109.47597 * 300.00064 * 1 2 3 24 24 H 1.09003 * 109.46857 * 60.00536 * 1 2 3 25 25 H 1.09004 * 109.46614 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46935 * 29.97313 * 9 8 7 27 27 H 1.08997 * 109.47416 * 149.97136 * 9 8 7 28 28 H 1.09000 * 109.46731 * 299.99720 * 10 9 8 29 29 H 1.08997 * 109.47295 * 59.99345 * 10 9 8 30 30 H 0.96995 * 119.99350 * 180.02562 * 14 13 11 31 31 H 1.08994 * 109.47306 * 179.97438 * 20 3 2 32 32 H 1.09004 * 109.47190 * 60.00170 * 21 20 3 33 33 H 1.09002 * 109.47333 * 179.97438 * 21 20 3 34 34 H 1.08994 * 109.47272 * 300.00151 * 21 20 3 35 35 H 1.09004 * 109.47035 * 300.00523 * 22 20 3 36 36 H 1.09006 * 109.46717 * 59.99611 * 22 20 3 37 37 H 1.08998 * 109.47230 * 179.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 7 2.7118 1.0596 -2.3927 7 8 2.7446 1.7151 -3.4127 8 6 2.2560 2.9373 -3.1816 9 6 2.1216 4.0545 -4.1840 10 6 3.3985 4.8974 -4.1826 11 6 3.2644 6.0143 -5.1854 12 1 2.3591 6.1128 -5.7660 13 6 4.2974 6.9103 -5.3617 14 7 5.3997 6.7905 -4.6542 15 14 4.1314 8.2943 -6.6052 16 1 2.9727 9.1493 -6.2425 17 1 5.3702 9.1130 -6.6029 18 1 3.9190 7.7209 -7.9586 19 7 1.9159 2.9788 -1.9158 20 6 3.3588 1.2634 0.7213 21 6 3.1514 0.7975 2.1638 22 6 4.2927 0.2894 0.0001 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9648 3.6344 -5.1774 27 1 1.2716 4.6823 -3.9166 28 1 3.5554 5.3176 -3.1891 29 1 4.2486 4.2697 -4.4499 30 1 6.1262 7.4211 -4.7780 31 1 3.8023 2.2591 0.7209 32 1 2.7081 -0.1983 2.1638 33 1 4.1122 0.7671 2.6776 34 1 2.4860 1.4913 2.6776 35 1 3.8493 -0.7064 0.0001 36 1 4.4404 0.6214 -1.0276 37 1 5.2536 0.2598 0.5137 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234742795.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:09 Heat of formation + Delta-G solvation = -18.880339 kcal Electronic energy + Delta-G solvation = -18923.618040 eV Core-core repulsion = 15896.207356 eV Total energy + Delta-G solvation = -3027.410685 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.60705 -39.95783 -37.00329 -36.28925 -35.65125 -34.21370 -31.91944 -28.99338 -28.15889 -27.68565 -27.15315 -24.85275 -23.81053 -22.33729 -21.07509 -19.23646 -18.68805 -18.33561 -17.66621 -16.80533 -16.55573 -16.47980 -15.70299 -15.19461 -15.05009 -14.63010 -14.34270 -14.27725 -13.67673 -13.44988 -13.22798 -12.99696 -12.88517 -12.78429 -12.69868 -12.50640 -12.18005 -12.03114 -12.00314 -11.91517 -11.76021 -11.66700 -11.36540 -11.05599 -10.76344 -10.55451 -8.19901 -6.32219 0.11253 1.12979 1.46685 1.49397 1.57013 1.85639 2.32695 2.45131 2.70759 3.15525 3.18020 3.67843 3.72724 4.00540 4.15305 4.29634 4.38272 4.43504 4.46233 4.52014 4.58794 4.61443 4.74234 4.77785 4.88253 4.91604 4.96560 4.97392 5.09485 5.32844 5.39901 5.42920 5.52653 5.77525 5.94142 6.13179 6.83196 7.12927 7.38111 8.92360 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.035778 B = 0.004273 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.421372 B = 6551.087116 C = 6892.453071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.373 6.373 3 C 0.189 3.811 4 H 0.106 0.894 5 C 0.139 3.861 6 N -0.382 5.382 7 O 0.059 5.941 8 C 0.205 3.795 9 C -0.014 4.014 10 C 0.035 3.965 11 C -0.540 4.540 12 H 0.078 0.922 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.970 3.030 16 H -0.264 1.264 17 H -0.289 1.289 18 H -0.263 1.263 19 N -0.506 5.506 20 C -0.090 4.090 21 C -0.132 4.132 22 C -0.142 4.142 23 H 0.068 0.932 24 H 0.025 0.975 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.114 0.886 28 H -0.006 1.006 29 H -0.004 1.004 30 H 0.264 0.736 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -11.533 10.410 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.290 6.290 3 C 0.128 3.872 4 H 0.123 0.877 5 C -0.135 4.135 6 N -0.093 5.093 7 O 0.004 5.996 8 C -0.014 4.014 9 C -0.052 4.052 10 C -0.004 4.004 11 C -0.578 4.578 12 H 0.097 0.903 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.215 1.215 18 H -0.188 1.188 19 N -0.241 5.241 20 C -0.109 4.109 21 C -0.189 4.189 22 C -0.199 4.199 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.455 -12.308 10.912 18.495 hybrid contribution 0.252 1.119 -0.923 1.473 sum -8.203 -11.189 9.989 17.096 Atomic orbital electron populations 1.23077 0.79354 1.04398 1.00588 1.87975 1.21468 1.25413 1.94149 1.20509 0.97765 0.85841 0.83043 0.87664 1.27009 0.98515 0.87050 1.00958 1.74589 1.20794 1.19768 0.94163 1.85289 1.60857 1.22359 1.31104 1.29554 0.90229 0.88010 0.93592 1.20521 1.01914 0.88556 0.94249 1.18936 0.91262 0.93870 0.96301 1.21538 1.02432 1.11893 1.21941 0.90342 1.25996 0.94768 1.00769 0.98161 1.70113 1.06578 1.38427 1.42379 0.85425 0.77495 0.78426 0.79256 1.18910 1.21487 1.18781 1.71902 1.24404 1.20821 1.06956 1.21276 0.92030 1.00526 0.97067 1.21698 1.02931 1.02186 0.92123 1.21767 0.99375 0.99713 0.99065 0.91331 0.95599 0.87311 0.86702 0.86746 0.98771 0.98548 0.92760 0.90538 0.91462 0.91023 0.91369 0.91795 0.95199 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.81 113.37 1.23 1.63 16 2 O -0.37 -9.36 8.99 -148.98 -1.34 -10.70 16 3 C 0.19 5.08 2.40 29.85 0.07 5.15 16 4 H 0.11 2.48 7.79 -2.38 -0.02 2.46 16 5 C 0.14 4.84 6.52 138.46 0.90 5.74 16 6 N -0.38 -14.36 10.40 -60.32 -0.63 -14.99 16 7 O 0.06 2.29 11.31 74.85 0.85 3.14 16 8 C 0.21 7.92 7.77 88.38 0.69 8.61 16 9 C -0.01 -0.52 5.78 29.85 0.17 -0.34 16 10 C 0.03 1.74 4.95 29.85 0.15 1.89 16 11 C -0.54 -28.66 9.11 25.60 0.23 -28.43 16 12 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.94 -55.82 13.29 21.45 0.28 -55.53 16 15 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 16 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 N -0.51 -19.36 11.55 -303.19 -3.50 -22.87 16 20 C -0.09 -2.19 2.80 -10.79 -0.03 -2.22 16 21 C -0.13 -2.30 9.05 71.98 0.65 -1.65 16 22 C -0.14 -3.79 8.67 71.98 0.62 -3.17 16 23 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 24 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 27 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.16 7.68 -2.38 -0.02 1.14 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.69 7.68 -2.38 -0.02 1.67 16 36 H 0.03 0.97 6.08 -2.38 -0.01 0.95 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -65.18 314.49 3.88 -61.30 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.04 Total: 7.56 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.15 Total: -12.26 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -3.84 Total: -93.39 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.49 Total: -7.57 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -65.18 3.88 -61.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234742795.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.422 kcal (2) G-P(sol) polarization free energy of solvation -65.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds