Wall clock time and date at job start Mon Mar 30 2020 06:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99396 * 2 1 4 4 H 1.09000 * 109.47604 * 327.48873 * 3 2 1 5 5 C 1.50699 * 109.47147 * 87.49016 * 3 2 1 6 6 N 1.29943 * 126.28855 * 45.02235 * 5 3 2 7 7 O 1.21300 * 110.25209 * 179.97438 * 6 5 3 8 8 C 1.33639 * 109.81012 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.55228 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47356 * 269.98008 * 9 8 7 11 11 H 1.08002 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00128 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99657 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99996 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47361 * 89.99661 * 14 12 10 16 16 H 1.48497 * 109.47190 * 210.00203 * 14 12 10 17 17 H 1.48503 * 109.47031 * 329.99862 * 14 12 10 18 18 N 1.31126 * 106.89822 * 359.77243 * 8 7 6 19 19 C 1.53001 * 109.46755 * 207.48932 * 3 2 1 20 20 C 1.52997 * 109.47310 * 63.51955 * 19 3 2 21 21 C 1.52996 * 109.47100 * 183.52469 * 19 3 2 22 22 C 1.53005 * 109.46941 * 303.51977 * 19 3 2 23 23 H 1.09002 * 109.46618 * 184.70254 * 1 2 3 24 24 H 1.08999 * 109.47425 * 304.70611 * 1 2 3 25 25 H 1.09007 * 109.47011 * 64.71023 * 1 2 3 26 26 H 1.09010 * 109.46860 * 29.98036 * 9 8 7 27 27 H 1.09005 * 109.47378 * 149.97453 * 9 8 7 28 28 H 0.97000 * 119.99297 * 180.02562 * 13 12 10 29 29 H 1.08997 * 109.46722 * 55.24445 * 20 19 3 30 30 H 1.09002 * 109.47265 * 175.24146 * 20 19 3 31 31 H 1.08999 * 109.47309 * 295.24461 * 20 19 3 32 32 H 1.08998 * 109.47806 * 59.99382 * 21 19 3 33 33 H 1.09003 * 109.47529 * 180.02562 * 21 19 3 34 34 H 1.09004 * 109.47109 * 299.99884 * 21 19 3 35 35 H 1.08996 * 109.47008 * 60.00292 * 22 19 3 36 36 H 1.09003 * 109.46688 * 180.02562 * 22 19 3 37 37 H 1.09003 * 109.47245 * 299.99871 * 22 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3662 1.9900 -0.5523 5 6 2.1575 1.7898 1.4194 6 7 2.6153 1.1026 2.4228 7 8 2.6075 1.7763 3.4315 8 6 2.1299 2.9943 3.1590 9 6 1.9562 4.1293 4.1350 10 6 0.5824 4.0571 4.7502 11 1 -0.0969 3.2679 4.4635 12 6 0.1930 4.9979 5.6800 13 7 1.0208 5.9579 6.0303 14 14 -1.5096 4.9078 6.4430 15 1 -1.4577 4.0768 7.6726 16 1 -1.9697 6.2765 6.7896 17 1 -2.4550 4.2986 5.4733 18 7 1.8455 3.0146 1.8791 19 6 3.3866 1.2510 -0.6659 20 6 3.2281 0.8439 -2.1321 21 6 4.0459 2.6294 -0.5876 22 6 4.2622 0.2252 0.0565 23 1 -0.3632 -1.0243 0.0843 24 1 -0.3634 0.5851 0.8448 25 1 -0.3633 0.4390 -0.9292 26 1 2.7098 4.0530 4.9189 27 1 2.0708 5.0789 3.6123 28 1 0.7469 6.6195 6.6847 29 1 2.5368 1.5267 -2.6260 30 1 4.1978 0.8869 -2.6280 31 1 2.8367 -0.1720 -2.1869 32 1 4.1588 2.9196 0.4569 33 1 5.0263 2.5908 -1.0624 34 1 3.4220 3.3603 -1.1022 35 1 3.7926 -0.7568 0.0008 36 1 5.2430 0.1867 -0.4176 37 1 4.3752 0.5153 1.1012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234753912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:33 Heat of formation + Delta-G solvation = 2.670470 kcal Electronic energy + Delta-G solvation = -19476.827503 eV Core-core repulsion = 16450.351332 eV Total energy + Delta-G solvation = -3026.476171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.77083 -39.09392 -35.94712 -34.91564 -33.69025 -31.84688 -28.57522 -27.77624 -27.35081 -27.16419 -25.72960 -24.01729 -22.65249 -20.86457 -18.94785 -17.53510 -16.90170 -16.35558 -16.33349 -15.57683 -15.32934 -14.78958 -14.08248 -13.70552 -13.68238 -13.25529 -12.70883 -12.50440 -12.29515 -12.21093 -11.92526 -11.60831 -11.55857 -11.36879 -11.18175 -11.03234 -10.84023 -10.78030 -10.67110 -10.50365 -10.27861 -10.10721 -9.87293 -9.84158 -8.91672 -8.63092 -6.26645 -4.32258 1.98080 2.93113 3.22676 3.29065 3.33493 3.58584 3.80910 4.15604 4.31387 4.71691 4.78705 4.95322 5.05021 5.12910 5.25536 5.36105 5.42866 5.54472 5.61033 5.67553 5.71836 5.80137 5.90621 5.94488 6.02345 6.09264 6.16220 6.37820 6.49115 6.59094 6.67587 7.07688 7.11807 7.19003 7.66720 7.90792 8.67851 8.98094 9.32616 10.83789 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.005314 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.993822 B = 5268.194497 C = 5646.413827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.196 3.804 4 H 0.086 0.914 5 C 0.133 3.867 6 N -0.383 5.383 7 O 0.059 5.941 8 C 0.235 3.765 9 C 0.101 3.899 10 C -0.524 4.524 11 H 0.060 0.940 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.906 3.094 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.273 1.273 18 N -0.504 5.504 19 C -0.058 4.058 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.139 4.139 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -7.979 -12.791 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.283 6.283 3 C 0.136 3.864 4 H 0.104 0.896 5 C -0.140 4.140 6 N -0.095 5.095 7 O 0.004 5.996 8 C 0.017 3.983 9 C 0.063 3.937 10 C -0.562 4.562 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.525 5.525 14 Si 0.733 3.267 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.239 5.239 19 C -0.059 4.059 20 C -0.193 4.193 21 C -0.197 4.197 22 C -0.196 4.196 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.349 -8.643 -13.137 16.078 hybrid contribution -1.236 0.393 0.724 1.486 sum 2.113 -8.249 -12.413 15.053 Atomic orbital electron populations 1.22844 0.80877 1.02832 1.00309 1.87950 1.19790 1.26128 1.94409 1.20240 0.95789 0.84748 0.85610 0.89573 1.26160 1.00434 0.88386 0.99068 1.74530 1.21589 1.19280 0.94127 1.85286 1.61321 1.22366 1.30660 1.30124 0.87916 0.88096 0.92207 1.18191 0.99561 0.85962 0.90028 1.20785 0.97877 1.13389 1.24198 0.92154 1.24921 0.98049 0.94714 0.95981 1.69924 1.35773 1.14644 1.32166 0.86359 0.83289 0.77545 0.79537 1.20250 1.20832 1.19728 1.71938 1.24157 1.19502 1.08270 1.20584 0.92565 0.97044 0.95729 1.21802 1.01742 1.01909 0.93828 1.21834 1.00303 0.95043 1.02481 1.21834 0.98172 0.98926 1.00712 0.89422 0.93865 0.93728 0.92449 0.91383 0.92259 0.92725 0.92266 0.91794 0.92540 0.91994 0.92084 0.91742 0.92999 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.79 101.05 1.09 1.45 16 2 O -0.37 -5.60 9.08 -35.23 -0.32 -5.92 16 3 C 0.20 3.07 1.93 -27.88 -0.05 3.02 16 4 H 0.09 1.28 7.86 -51.93 -0.41 0.87 16 5 C 0.13 2.59 5.05 -156.38 -0.79 1.80 16 6 N -0.38 -7.92 10.49 30.90 0.32 -7.60 16 7 O 0.06 1.30 11.31 18.11 0.20 1.51 16 8 C 0.23 5.31 7.70 -13.06 -0.10 5.21 16 9 C 0.10 2.48 5.60 -29.04 -0.16 2.32 16 10 C -0.52 -14.05 9.09 -34.44 -0.31 -14.37 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 14 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 N -0.50 -10.92 11.54 -9.87 -0.11 -11.03 16 19 C -0.06 -0.77 0.63 -154.51 -0.10 -0.87 16 20 C -0.14 -1.43 8.30 37.16 0.31 -1.12 16 21 C -0.14 -1.84 8.18 37.16 0.30 -1.54 16 22 C -0.14 -1.93 8.01 37.16 0.30 -1.63 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.64 8.04 -51.93 -0.42 0.22 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.40 8.14 -51.92 -0.42 0.98 16 27 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 32 H 0.06 0.89 7.10 -51.93 -0.37 0.52 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.91 7.59 -51.93 -0.39 0.52 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.03 6.18 -51.93 -0.32 0.70 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -28.52 311.33 -4.78 -33.30 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.67 Total: -2.75 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 0.38 Total: -4.05 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.95 Total: -42.47 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.12 Total: -4.41 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.52 -4.78 -33.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234753912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.974 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds