Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99408 * 2 1 4 4 H 1.09000 * 109.47442 * 30.00263 * 3 2 1 5 5 C 1.52997 * 109.47300 * 269.99893 * 3 2 1 6 6 C 1.53006 * 109.46855 * 150.00530 * 3 2 1 7 7 C 1.50699 * 109.46866 * 294.99874 * 6 3 2 8 8 N 1.29953 * 126.28790 * 269.69060 * 7 6 3 9 9 O 1.21301 * 110.24977 * 179.84421 * 8 7 6 10 10 C 1.33645 * 109.81216 * 0.42476 * 9 8 7 11 11 C 1.50694 * 126.54963 * 179.72121 * 10 9 8 12 12 H 1.09001 * 109.46822 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47528 * 60.02132 * 11 10 9 14 14 C 1.52998 * 109.47178 * 300.01845 * 11 10 9 15 15 C 1.50703 * 109.47545 * 185.00130 * 14 11 10 16 16 H 1.08003 * 119.99333 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00081 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00027 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46764 * 60.00708 * 19 17 15 21 21 H 1.48495 * 109.46978 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47492 * 300.00529 * 19 17 15 23 23 N 1.31137 * 106.89670 * 359.73510 * 10 9 8 24 24 H 1.08994 * 109.46925 * 299.99369 * 1 2 3 25 25 H 1.09001 * 109.47428 * 59.99877 * 1 2 3 26 26 H 1.09002 * 109.46335 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46731 * 60.00411 * 5 3 2 28 28 H 1.09004 * 109.47394 * 179.97438 * 5 3 2 29 29 H 1.08990 * 109.47621 * 300.00690 * 5 3 2 30 30 H 1.08993 * 109.46955 * 55.00093 * 6 3 2 31 31 H 1.09000 * 109.47050 * 174.99922 * 6 3 2 32 32 H 1.08997 * 109.47477 * 180.02562 * 13 11 10 33 33 H 1.08998 * 109.46844 * 300.00297 * 13 11 10 34 34 H 1.09001 * 109.46929 * 59.99814 * 13 11 10 35 35 H 1.08996 * 109.47457 * 305.00818 * 14 11 10 36 36 H 1.09009 * 109.47011 * 65.00186 * 14 11 10 37 37 H 0.96997 * 120.00086 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1417 0.9236 2.1732 8 7 2.9479 1.7697 3.1404 9 8 2.8033 1.1806 4.1908 10 6 2.9031 -0.1368 3.9889 11 6 2.7901 -1.2161 5.0344 12 1 2.9160 -2.1916 4.5647 13 6 1.4126 -1.1427 5.6964 14 6 3.8761 -1.0161 6.0934 15 6 3.8419 -2.1626 7.0709 16 1 3.1182 -2.9549 6.9487 17 6 4.7352 -2.2005 8.1204 18 7 5.6168 -1.2360 8.2688 19 14 4.6923 -3.6213 9.3325 20 1 4.9337 -4.8959 8.6097 21 1 5.7465 -3.4273 10.3601 22 1 3.3623 -3.6701 9.9913 23 7 3.1186 -0.3106 2.7071 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.2567 1.8015 -1.9562 28 1 2.6604 2.7675 -1.4425 29 1 2.8827 1.0777 -1.9563 30 1 3.9931 0.5053 0.2616 31 1 3.8426 2.2371 0.6443 32 1 1.3310 -1.9231 6.4530 33 1 1.2868 -0.1672 6.1661 34 1 0.6389 -1.2852 4.9420 35 1 4.8524 -0.9796 5.6102 36 1 3.6982 -0.0807 6.6241 37 1 6.2450 -1.2625 9.0074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234784392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = -1.939530 kcal Electronic energy + Delta-G solvation = -18842.973630 eV Core-core repulsion = 15816.297554 eV Total energy + Delta-G solvation = -3026.676076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.03209 -38.56363 -35.83855 -35.38720 -33.12361 -32.31702 -30.72926 -27.97336 -27.11112 -26.67783 -24.57063 -23.15677 -22.43750 -21.42419 -19.46929 -17.52494 -17.02170 -16.72357 -16.41377 -15.42782 -15.39309 -14.59324 -14.47795 -14.06214 -13.41597 -13.13158 -12.91667 -12.60639 -12.55777 -12.24898 -11.91572 -11.86782 -11.72598 -11.34501 -11.14084 -10.97245 -10.88966 -10.78145 -10.52169 -10.47057 -10.12918 -9.92415 -9.69710 -9.24454 -9.11878 -8.42495 -6.06576 -4.10563 1.68015 2.70888 3.31474 3.36391 3.37782 3.45631 3.60666 3.94973 4.38815 4.49385 4.67899 4.87006 4.95814 5.14741 5.24410 5.29512 5.32002 5.43602 5.50611 5.55060 5.61367 5.74794 5.85285 5.88458 5.91823 6.08661 6.33190 6.44599 6.60486 6.71618 6.85050 7.06627 7.50791 7.59068 7.88814 8.25340 8.68305 8.93598 9.53726 11.04751 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.041523 B = 0.004253 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.155210 B = 6581.792837 C = 6861.679390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.172 4.172 6 C -0.024 4.024 7 C 0.167 3.833 8 N -0.403 5.403 9 O 0.073 5.927 10 C 0.215 3.785 11 C -0.001 4.001 12 H 0.105 0.895 13 C -0.134 4.134 14 C 0.029 3.971 15 C -0.522 4.522 16 H 0.062 0.938 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 N -0.486 5.486 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.022 0.978 36 H 0.028 0.972 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 4.810 -15.156 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C 0.031 3.969 4 H 0.080 0.920 5 C -0.229 4.229 6 C -0.063 4.063 7 C -0.106 4.106 8 N -0.114 5.114 9 O 0.017 5.983 10 C -0.004 4.004 11 C -0.021 4.021 12 H 0.123 0.877 13 C -0.192 4.192 14 C -0.009 4.009 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 N -0.219 5.219 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.365 5.343 -15.537 18.437 hybrid contribution -0.074 -0.522 0.818 0.974 sum -8.439 4.821 -14.718 17.638 Atomic orbital electron populations 1.22750 0.81378 1.02780 0.99449 1.88035 1.19293 1.26731 1.94949 1.22057 0.93949 0.85522 0.95384 0.92032 1.22258 1.02671 1.01831 0.96180 1.20042 0.97634 1.03821 0.84777 1.25516 1.01233 0.85311 0.98582 1.74555 1.22142 1.21891 0.92848 1.85253 1.64896 1.19829 1.28340 1.29619 0.91950 0.85479 0.93394 1.20321 0.99779 0.90804 0.91213 0.87674 1.21771 0.93531 1.03642 1.00286 1.19234 0.91598 0.98574 0.91470 1.21029 1.17531 1.07180 1.10222 0.92006 1.24999 0.95239 0.96123 0.97838 1.69955 1.19465 1.32380 1.31221 0.86603 0.77761 0.82596 0.80747 1.20129 1.21313 1.20097 1.71967 1.21285 1.23375 1.05295 0.94435 0.94307 0.89541 0.92169 0.91324 0.91291 0.87927 0.88043 0.89709 0.92409 0.94154 0.96012 0.95321 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.82 101.05 1.09 1.44 16 2 O -0.37 -5.03 10.10 -35.23 -0.36 -5.38 16 3 C 0.09 1.04 2.71 -26.73 -0.07 0.97 16 4 H 0.06 0.72 7.79 -51.93 -0.40 0.31 16 5 C -0.17 -1.44 9.53 37.16 0.35 -1.08 16 6 C -0.02 -0.31 5.55 -27.88 -0.15 -0.47 16 7 C 0.17 2.94 7.24 -156.37 -1.13 1.81 16 8 N -0.40 -7.66 12.16 30.90 0.38 -7.29 16 9 O 0.07 1.47 11.31 18.10 0.20 1.67 16 10 C 0.21 4.32 7.02 -13.05 -0.09 4.23 16 11 C 0.00 -0.01 2.81 -91.78 -0.26 -0.27 16 12 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 13 C -0.13 -2.36 8.99 37.16 0.33 -2.02 16 14 C 0.03 0.72 4.43 -27.88 -0.12 0.60 16 15 C -0.52 -13.80 8.41 -34.44 -0.29 -14.09 16 16 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 N -0.49 -9.61 11.55 -9.86 -0.11 -9.73 16 24 H 0.04 0.40 8.08 -51.93 -0.42 -0.01 16 25 H 0.04 0.32 7.87 -51.93 -0.41 -0.08 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.50 6.95 -51.93 -0.36 1.14 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -30.71 317.56 -5.56 -36.27 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.74 Total: -3.50 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.44 Total: -7.33 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 1.00 Total: -42.35 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.15 Total: -3.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.71 -5.56 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234784392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.329 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds