Wall clock time and date at job start Mon Mar 30 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99408 * 2 1 4 4 H 1.09000 * 109.47442 * 30.00263 * 3 2 1 5 5 C 1.52997 * 109.47300 * 269.99893 * 3 2 1 6 6 C 1.53006 * 109.46855 * 150.00530 * 3 2 1 7 7 C 1.50699 * 109.46866 * 294.99874 * 6 3 2 8 8 N 1.29953 * 126.28790 * 269.69060 * 7 6 3 9 9 O 1.21301 * 110.24977 * 179.84421 * 8 7 6 10 10 C 1.33645 * 109.81216 * 0.42476 * 9 8 7 11 11 C 1.50694 * 126.54963 * 179.72121 * 10 9 8 12 12 H 1.09001 * 109.46822 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47528 * 60.02132 * 11 10 9 14 14 C 1.52998 * 109.47178 * 300.01845 * 11 10 9 15 15 C 1.50703 * 109.47545 * 185.00130 * 14 11 10 16 16 H 1.08003 * 119.99333 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00081 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00027 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46764 * 60.00708 * 19 17 15 21 21 H 1.48495 * 109.46978 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47492 * 300.00529 * 19 17 15 23 23 N 1.31137 * 106.89670 * 359.73510 * 10 9 8 24 24 H 1.08994 * 109.46925 * 299.99369 * 1 2 3 25 25 H 1.09001 * 109.47428 * 59.99877 * 1 2 3 26 26 H 1.09002 * 109.46335 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46731 * 60.00411 * 5 3 2 28 28 H 1.09004 * 109.47394 * 179.97438 * 5 3 2 29 29 H 1.08990 * 109.47621 * 300.00690 * 5 3 2 30 30 H 1.08993 * 109.46955 * 55.00093 * 6 3 2 31 31 H 1.09000 * 109.47050 * 174.99922 * 6 3 2 32 32 H 1.08997 * 109.47477 * 180.02562 * 13 11 10 33 33 H 1.08998 * 109.46844 * 300.00297 * 13 11 10 34 34 H 1.09001 * 109.46929 * 59.99814 * 13 11 10 35 35 H 1.08996 * 109.47457 * 305.00818 * 14 11 10 36 36 H 1.09009 * 109.47011 * 65.00186 * 14 11 10 37 37 H 0.96997 * 120.00086 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1417 0.9236 2.1732 8 7 2.9479 1.7697 3.1404 9 8 2.8033 1.1806 4.1908 10 6 2.9031 -0.1368 3.9889 11 6 2.7901 -1.2161 5.0344 12 1 2.9160 -2.1916 4.5647 13 6 1.4126 -1.1427 5.6964 14 6 3.8761 -1.0161 6.0934 15 6 3.8419 -2.1626 7.0709 16 1 3.1182 -2.9549 6.9487 17 6 4.7352 -2.2005 8.1204 18 7 5.6168 -1.2360 8.2688 19 14 4.6923 -3.6213 9.3325 20 1 4.9337 -4.8959 8.6097 21 1 5.7465 -3.4273 10.3601 22 1 3.3623 -3.6701 9.9913 23 7 3.1186 -0.3106 2.7071 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.2567 1.8015 -1.9562 28 1 2.6604 2.7675 -1.4425 29 1 2.8827 1.0777 -1.9563 30 1 3.9931 0.5053 0.2616 31 1 3.8426 2.2371 0.6443 32 1 1.3310 -1.9231 6.4530 33 1 1.2868 -0.1672 6.1661 34 1 0.6389 -1.2852 4.9420 35 1 4.8524 -0.9796 5.6102 36 1 3.6982 -0.0807 6.6241 37 1 6.2450 -1.2625 9.0074 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234784392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:10 Heat of formation + Delta-G solvation = -22.529516 kcal Electronic energy + Delta-G solvation = -18843.866479 eV Core-core repulsion = 15816.297554 eV Total energy + Delta-G solvation = -3027.568925 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.53159 -39.48371 -37.51860 -36.83463 -34.69146 -33.80482 -32.19542 -29.03581 -28.90468 -27.52933 -26.27214 -24.68575 -23.99855 -22.51541 -20.99538 -19.04181 -18.62996 -18.24367 -17.69960 -16.54914 -16.42876 -16.27449 -16.13620 -15.26603 -14.90482 -14.42020 -14.08120 -13.91110 -13.66361 -13.60283 -13.13948 -13.09543 -12.94240 -12.81578 -12.68038 -12.58681 -12.31678 -12.28055 -12.08074 -11.87033 -11.78834 -11.51864 -11.26697 -10.83570 -10.56590 -10.52901 -8.17103 -6.28111 0.13842 1.24742 1.47391 1.49915 1.57270 1.88657 2.44576 2.66335 2.74887 3.08334 3.18167 3.81354 3.84286 4.09466 4.15992 4.17769 4.28858 4.39194 4.45031 4.53780 4.57661 4.69976 4.77453 4.82989 4.85021 4.93769 4.99732 5.04114 5.09970 5.28110 5.35473 5.41182 5.58394 5.80179 6.17020 6.21838 6.85595 7.15771 7.41220 8.95335 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.041523 B = 0.004253 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.155210 B = 6581.792837 C = 6861.679390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.163 4.163 6 C -0.028 4.028 7 C 0.174 3.826 8 N -0.414 5.414 9 O 0.054 5.946 10 C 0.208 3.792 11 C 0.009 3.991 12 H 0.110 0.890 13 C -0.127 4.127 14 C 0.038 3.962 15 C -0.530 4.530 16 H 0.078 0.922 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.966 3.034 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.262 1.262 23 N -0.500 5.500 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.066 0.934 35 H -0.014 1.014 36 H 0.004 0.996 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.857 4.211 -16.288 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C 0.031 3.969 4 H 0.076 0.924 5 C -0.221 4.221 6 C -0.066 4.066 7 C -0.099 4.099 8 N -0.128 5.128 9 O 0.002 5.998 10 C -0.011 4.011 11 C -0.011 4.011 12 H 0.128 0.872 13 C -0.185 4.185 14 C 0.000 4.000 15 C -0.568 4.568 16 H 0.096 0.904 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.216 1.216 22 H -0.186 1.186 23 N -0.234 5.234 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.005 0.995 36 H 0.023 0.977 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.561 4.739 -16.658 19.783 hybrid contribution 0.302 -0.290 1.086 1.164 sum -9.260 4.450 -15.572 18.656 Atomic orbital electron populations 1.22873 0.80135 1.03476 1.00179 1.87987 1.20809 1.27988 1.95212 1.22152 0.92728 0.84879 0.97146 0.92397 1.22199 1.03479 1.02667 0.93721 1.20412 0.99115 1.05268 0.81856 1.26353 0.99052 0.84304 1.00179 1.74550 1.23303 1.22092 0.92848 1.85236 1.65542 1.19847 1.29161 1.29544 0.92344 0.85551 0.93682 1.20116 0.99711 0.91133 0.90175 0.87189 1.21718 0.92435 1.03542 1.00795 1.19022 0.91518 0.97262 0.92238 1.21478 1.17473 1.07664 1.10185 0.90355 1.25960 0.94860 0.98817 1.00018 1.70110 1.20578 1.34714 1.32147 0.85473 0.78139 0.79179 0.78114 1.19142 1.21597 1.18622 1.71986 1.21542 1.24613 1.05211 0.95243 0.91982 0.88977 0.91155 0.89516 0.91167 0.87453 0.85531 0.89662 0.92647 0.91470 0.99535 0.97725 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.82 113.37 1.23 1.80 16 2 O -0.40 -10.25 10.10 -148.98 -1.50 -11.75 16 3 C 0.09 1.90 2.71 30.60 0.08 1.98 16 4 H 0.06 1.25 7.79 -2.39 -0.02 1.23 16 5 C -0.16 -2.26 9.53 71.98 0.69 -1.58 16 6 C -0.03 -0.68 5.55 29.85 0.17 -0.51 16 7 C 0.17 6.05 7.24 138.46 1.00 7.05 16 8 N -0.41 -15.68 12.16 -60.29 -0.73 -16.41 16 9 O 0.05 2.21 11.31 74.81 0.85 3.06 16 10 C 0.21 8.45 7.02 88.38 0.62 9.07 16 11 C 0.01 0.37 2.81 -11.54 -0.03 0.33 16 12 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 13 C -0.13 -4.33 8.99 71.98 0.65 -3.68 16 14 C 0.04 1.92 4.43 29.85 0.13 2.05 16 15 C -0.53 -28.14 8.41 25.60 0.22 -27.92 16 16 H 0.08 3.81 7.06 -2.91 -0.02 3.79 16 17 C 0.00 0.08 5.46 84.65 0.46 0.54 16 18 N -0.94 -55.96 13.29 21.45 0.28 -55.67 16 19 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 N -0.50 -19.66 11.55 -303.17 -3.50 -23.16 16 24 H 0.03 0.60 8.08 -2.39 -0.02 0.58 16 25 H 0.06 0.90 7.87 -2.39 -0.02 0.88 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 2.89 6.95 -2.39 -0.02 2.88 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -66.56 317.56 3.67 -62.89 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.04 Total: 7.35 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.21 Total: -10.86 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -3.95 Total: -95.25 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.66 Total: -8.69 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -66.56 3.67 -62.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234784392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.360 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds